Wall clock time and date at job start Tue Mar 31 2020 05:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.53929 * 113.73546 * 278.76330 * 9 7 2 11 11 N 1.48181 * 86.10389 * 221.96025 * 10 9 7 12 12 C 1.46904 * 111.07114 * 137.51831 * 11 10 9 13 13 C 1.53007 * 109.46668 * 90.56996 * 12 11 10 14 14 C 1.52991 * 109.46135 * 295.01881 * 13 12 11 15 15 C 1.53018 * 109.46352 * 179.83989 * 14 13 12 16 16 C 1.52963 * 109.42271 * 59.80028 * 15 14 13 17 17 C 1.52955 * 109.82195 * 300.29458 * 16 15 14 18 18 C 1.52990 * 109.45996 * 174.98018 * 13 12 11 19 19 O 1.43708 * 109.40442 * 60.40097 * 16 15 14 20 20 C 1.44796 * 104.79345 * 95.48962 * 19 16 15 21 21 C 1.54920 * 101.72254 * 36.06853 * 20 19 16 22 22 O 1.43306 * 109.64837 * 179.71600 * 16 15 14 23 23 C 1.47959 * 90.79999 * 24.60296 * 11 10 9 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 112.93881 * 50.33534 * 9 7 2 26 26 H 1.09002 * 113.76143 * 336.24436 * 10 9 7 27 27 H 1.09000 * 113.75970 * 107.60487 * 10 9 7 28 28 H 1.09001 * 109.47248 * 210.56324 * 12 11 10 29 29 H 1.09000 * 109.47229 * 330.57166 * 12 11 10 30 30 H 1.08993 * 109.46332 * 54.99876 * 13 12 11 31 31 H 1.09003 * 109.47100 * 299.84210 * 14 13 12 32 32 H 1.08991 * 109.47349 * 59.84804 * 14 13 12 33 33 H 1.08998 * 109.48447 * 299.81737 * 15 14 13 34 34 H 1.08992 * 109.47671 * 179.78549 * 15 14 13 35 35 H 1.09000 * 109.47725 * 299.70832 * 17 16 15 36 36 H 1.08994 * 109.47723 * 179.68516 * 17 16 15 37 37 H 1.09004 * 109.47080 * 300.14498 * 18 13 12 38 38 H 1.09003 * 109.47456 * 60.14405 * 18 13 12 39 39 H 1.09001 * 110.97727 * 277.96404 * 20 19 16 40 40 H 1.08998 * 111.00858 * 154.19503 * 20 19 16 41 41 H 1.09002 * 110.68936 * 206.07543 * 21 20 19 42 42 H 1.08997 * 110.83986 * 82.94704 * 21 20 19 43 43 H 1.08999 * 113.75755 * 221.09101 * 23 11 10 44 44 H 1.08993 * 113.76352 * 89.71798 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 0.7547 -2.9293 1.3905 11 7 1.1885 -4.2947 1.0119 12 6 1.8761 -4.9587 2.1274 13 6 0.8566 -5.7294 2.9686 14 6 -0.1153 -4.7439 3.6206 15 6 -1.1374 -5.5149 4.4587 16 6 -0.4092 -6.3123 5.5419 17 6 0.5676 -7.2951 4.8942 18 6 1.5867 -6.5214 4.0550 19 8 0.3157 -5.4096 6.3933 20 6 -0.5676 -5.1700 7.5154 21 6 -1.2377 -6.5558 7.6899 22 8 -1.3627 -7.0312 6.3342 23 6 2.1610 -3.7399 0.0445 24 1 -0.4849 0.8400 0.0004 25 1 0.4840 -2.5461 -0.7748 26 1 1.3264 -2.4991 2.2128 27 1 -0.3227 -2.8304 1.5225 28 1 2.6207 -5.6512 1.7347 29 1 2.3679 -4.2100 2.7484 30 1 0.3027 -6.4161 2.3287 31 1 0.4382 -4.0586 4.2625 32 1 -0.6332 -4.1783 2.8461 33 1 -1.6932 -6.1979 3.8164 34 1 -1.8276 -4.8128 4.9263 35 1 0.0180 -7.9847 4.2535 36 1 1.0872 -7.8562 5.6708 37 1 2.2807 -7.2215 3.5898 38 1 2.1389 -5.8345 4.6964 39 1 -1.3072 -4.4067 7.2737 40 1 -0.0024 -4.8949 8.4058 41 1 -2.2186 -6.4536 8.1542 42 1 -0.6038 -7.2222 8.2749 43 1 2.2049 -4.2875 -0.8969 44 1 3.1448 -3.5473 0.4722 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826990686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:00 Heat of formation + Delta-G solvation = -71.382636 kcal Electronic energy + Delta-G solvation = -23177.040562 eV Core-core repulsion = 19901.703880 eV Total energy + Delta-G solvation = -3275.336682 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.94113 -38.92413 -36.85541 -35.06190 -32.76792 -31.53350 -30.82191 -29.22278 -27.37734 -25.24424 -24.77768 -23.52002 -22.59804 -22.31812 -20.54963 -19.56269 -18.40660 -17.23947 -16.89006 -16.50786 -15.59776 -15.45719 -14.81857 -14.45210 -14.39115 -14.19845 -13.92181 -13.56514 -13.13440 -13.00722 -12.81680 -12.64317 -12.17885 -11.96626 -11.87305 -11.77773 -11.44428 -11.19776 -11.04689 -11.01585 -10.71198 -10.61483 -10.41838 -10.33599 -10.29486 -9.92458 -9.57469 -9.36513 -9.04821 -8.92703 -8.41180 -7.78931 -6.02836 -4.06779 3.26467 3.28774 3.37080 3.40821 3.83639 4.37541 4.42054 4.62111 4.67690 4.75663 4.83215 4.96043 5.13086 5.23026 5.28077 5.31747 5.33102 5.42351 5.50727 5.55905 5.61180 5.74053 5.86766 5.88293 5.93691 6.05697 6.13427 6.24576 6.27135 6.31349 6.38590 6.47927 6.58300 6.60341 6.71588 6.77694 6.90770 7.03467 7.21020 7.32455 7.76620 7.95206 8.17061 8.40750 8.95770 9.57882 11.06642 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024860 B = 0.003892 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.029209 B = 7193.312496 C = 7782.549392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.036 3.964 10 C 0.018 3.982 11 N -0.491 5.491 12 C 0.028 3.972 13 C -0.077 4.077 14 C -0.110 4.110 15 C -0.133 4.133 16 C 0.258 3.742 17 C -0.115 4.115 18 C -0.110 4.110 19 O -0.363 6.363 20 C 0.013 3.987 21 C 0.021 3.979 22 O -0.382 6.382 23 C -0.003 4.003 24 H 0.260 0.740 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.340 -13.142 14.341 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.017 3.983 10 C -0.111 4.111 11 N -0.214 5.214 12 C -0.101 4.101 13 C -0.095 4.095 14 C -0.147 4.147 15 C -0.171 4.171 16 C 0.182 3.818 17 C -0.152 4.152 18 C -0.148 4.148 19 O -0.283 6.283 20 C -0.063 4.063 21 C -0.056 4.056 22 O -0.303 6.303 23 C -0.131 4.131 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.893 -13.589 14.011 19.611 hybrid contribution 0.956 1.534 0.700 1.938 sum -0.937 -12.055 14.712 19.043 Atomic orbital electron populations 1.69976 1.05941 1.26511 1.50004 1.25000 0.94803 0.99054 0.94767 0.86593 0.80211 0.83931 0.77611 1.19766 1.20934 1.21043 1.21151 0.92797 0.90472 1.51104 0.92503 1.20337 0.93751 0.91024 0.93171 1.24120 0.99694 0.86505 1.00773 1.68447 1.26100 1.17160 1.09656 1.22596 0.95627 0.97943 0.93938 1.21077 0.96348 0.96820 0.95295 1.21606 0.96567 0.97758 0.98815 1.22100 0.98660 0.99361 0.96950 1.23437 0.84761 0.85534 0.88112 1.21785 0.96906 0.97127 0.99421 1.21516 0.97302 0.98875 0.97072 1.89296 1.39968 1.65196 1.33878 1.24352 0.94117 0.97072 0.90790 1.24146 1.01993 0.94544 0.84906 1.88884 1.59452 1.63370 1.18598 1.24030 0.95333 0.98029 0.95730 0.93005 0.92451 0.92905 0.91523 0.92281 0.94415 0.90813 0.91708 0.89865 0.90455 0.91669 0.90178 0.91372 0.91711 0.91287 0.90672 0.87601 0.88569 0.90883 0.91820 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.20 8.77 -34.44 -0.30 -14.50 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.04 0.91 3.60 -90.84 -0.33 0.59 16 10 C 0.02 0.40 5.74 -2.64 -0.02 0.39 16 11 N -0.49 -9.95 6.03 -238.15 -1.44 -11.39 16 12 C 0.03 0.48 4.40 -3.82 -0.02 0.46 16 13 C -0.08 -1.14 2.39 -90.63 -0.22 -1.36 16 14 C -0.11 -1.71 4.39 -26.73 -0.12 -1.83 16 15 C -0.13 -1.81 5.29 -26.74 -0.14 -1.96 16 16 C 0.26 3.32 1.03 -26.77 -0.03 3.30 16 17 C -0.11 -1.39 5.34 -26.75 -0.14 -1.53 16 18 C -0.11 -1.40 5.06 -26.73 -0.14 -1.54 16 19 O -0.36 -4.76 9.66 -59.04 -0.57 -5.33 16 20 C 0.01 0.13 7.91 38.17 0.30 0.43 16 21 C 0.02 0.18 8.07 38.17 0.31 0.49 16 22 O -0.38 -4.76 10.87 -59.04 -0.64 -5.40 16 23 C 0.00 -0.05 7.50 -2.76 -0.02 -0.07 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.06 1.59 8.14 -51.93 -0.42 1.16 16 26 H 0.05 1.25 7.44 -51.93 -0.39 0.86 16 27 H 0.07 1.58 7.10 -51.93 -0.37 1.21 16 28 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 29 H 0.04 0.68 7.39 -51.93 -0.38 0.30 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.07 7.69 -51.93 -0.40 0.67 16 32 H 0.08 1.46 5.63 -51.93 -0.29 1.17 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.94 7.69 -51.93 -0.40 0.55 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 LS Contribution 338.38 15.07 5.10 5.10 Total: -1.00 -29.48 338.38 -10.46 -39.94 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.68 Total: 1.18 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -0.95 Total: -15.38 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.70 Total: -36.27 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -1.21 Total: -10.73 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.48 -10.46 -39.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826990686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.438 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds