Wall clock time and date at job start Tue Mar 31 2020 07:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42892 * 113.99951 * 2 1 4 4 C 1.53008 * 109.47188 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47096 * 64.99638 * 4 3 2 6 6 C 1.36816 * 119.99875 * 84.55878 * 5 4 3 7 7 H 1.07993 * 120.00229 * 217.02874 * 6 5 4 8 8 C 1.39081 * 119.99720 * 36.76141 * 6 5 4 9 9 N 1.31343 * 120.00274 * 20.87868 * 8 6 5 10 10 Si 1.86806 * 119.99618 * 200.88240 * 8 6 5 11 11 H 1.48491 * 109.47395 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.46942 * 119.99880 * 10 8 6 13 13 H 1.48501 * 109.46858 * 239.99455 * 10 8 6 14 14 C 1.34775 * 120.00206 * 264.55771 * 5 4 3 15 15 O 1.21663 * 119.99882 * 0.02562 * 14 5 4 16 16 C 1.46954 * 120.00135 * 180.02562 * 14 5 4 17 17 C 1.33114 * 120.00138 * 187.44580 * 16 14 5 18 18 C 1.51270 * 120.85188 * 15.20419 * 17 16 14 19 19 C 1.53658 * 108.31635 * 128.61558 * 18 17 16 20 20 C 1.52960 * 109.32107 * 54.86163 * 19 18 17 21 21 C 1.53003 * 109.35313 * 176.20649 * 20 19 18 22 22 C 1.52965 * 109.81735 * 296.27336 * 20 19 18 23 23 C 1.51268 * 120.85227 * 195.48417 * 17 16 14 24 24 H 1.09001 * 109.47704 * 60.00144 * 1 2 3 25 25 H 1.09003 * 109.47402 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47372 * 299.99663 * 1 2 3 27 27 H 1.08996 * 109.47567 * 60.00042 * 3 2 1 28 28 H 1.09003 * 109.47270 * 300.00166 * 3 2 1 29 29 H 1.09002 * 109.46309 * 304.99948 * 4 3 2 30 30 H 1.08997 * 109.47150 * 185.00317 * 4 3 2 31 31 H 0.97000 * 119.99884 * 180.02562 * 9 8 6 32 32 H 1.08003 * 119.99787 * 7.45104 * 16 14 5 33 33 H 1.09007 * 109.62727 * 248.39185 * 18 17 16 34 34 H 1.09003 * 109.62470 * 8.95661 * 18 17 16 35 35 H 1.09008 * 109.62547 * 294.84637 * 19 18 17 36 36 H 1.08992 * 109.42104 * 174.74988 * 19 18 17 37 37 H 1.08991 * 109.41565 * 56.37950 * 20 19 18 38 38 H 1.09004 * 109.46782 * 180.31808 * 21 20 19 39 39 H 1.08998 * 109.46969 * 300.31546 * 21 20 19 40 40 H 1.08997 * 109.47325 * 60.32037 * 21 20 19 41 41 H 1.09000 * 109.48193 * 303.61871 * 22 20 19 42 42 H 1.09000 * 109.48078 * 183.57965 * 22 20 19 43 43 H 1.09004 * 109.62363 * 351.03466 * 23 17 16 44 44 H 1.09000 * 109.62972 * 111.41750 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.1585 1.3330 -2.3696 7 1 3.8951 0.9439 -3.3420 8 6 4.6785 2.6176 -2.2521 9 7 5.3646 2.9532 -1.1836 10 14 4.4011 3.8656 -3.6142 11 1 3.6036 3.2430 -4.7011 12 1 3.6680 5.0370 -3.0703 13 1 5.7116 4.3089 -4.1538 14 6 4.2005 -0.7635 -1.3043 15 8 4.0375 -1.4472 -0.3112 16 6 4.6426 -1.3857 -2.5601 17 6 4.7221 -2.7111 -2.6544 18 6 4.0534 -3.6030 -1.6319 19 6 3.1946 -4.6350 -2.3792 20 6 4.0660 -5.3807 -3.3914 21 6 3.2350 -6.4722 -4.0688 22 6 4.5825 -4.4044 -4.4497 23 6 5.4887 -3.3639 -3.7833 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.6886 1.8463 0.8899 28 1 1.6885 1.8463 -0.8900 29 1 3.8513 0.5681 0.8410 30 1 3.9785 2.1764 0.0890 31 1 5.7269 3.8493 -1.1016 32 1 4.9032 -0.7675 -3.4065 33 1 4.8125 -4.1142 -1.0397 34 1 3.4201 -3.0015 -0.9797 35 1 2.3840 -4.1270 -2.9019 36 1 2.7782 -5.3453 -1.6651 37 1 4.9111 -5.8363 -2.8756 38 1 3.8558 -7.0086 -4.7865 39 1 2.8664 -7.1684 -3.3155 40 1 2.3909 -6.0173 -4.5871 41 1 3.7391 -3.9020 -4.9233 42 1 5.1496 -4.9514 -5.2028 43 1 5.7779 -2.6087 -4.5142 44 1 6.3800 -3.8505 -3.3873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837234434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:54 Heat of formation + Delta-G solvation = -76.360566 kcal Electronic energy + Delta-G solvation = -23213.146135 eV Core-core repulsion = 19937.593593 eV Total energy + Delta-G solvation = -3275.552541 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -38.99008 -37.89830 -36.82088 -34.78388 -32.99155 -31.57808 -30.52145 -29.59107 -28.07527 -25.77528 -24.92820 -24.06978 -22.53673 -21.84540 -20.18245 -19.26540 -18.17580 -16.42887 -16.08744 -15.57548 -15.23268 -14.65075 -14.52716 -14.27523 -14.04842 -14.00074 -13.67754 -13.58641 -13.17913 -12.70431 -12.36909 -12.12219 -11.97698 -11.75036 -11.51794 -11.38110 -11.31068 -11.11822 -11.07902 -10.91947 -10.66709 -10.53895 -10.42837 -10.29425 -10.13281 -9.97110 -9.78145 -9.07184 -8.96221 -8.16761 -7.89982 -7.40483 -6.36308 -4.02733 2.37409 3.10641 3.20248 3.24165 4.09115 4.50339 4.57665 4.82489 4.95850 5.04827 5.10701 5.15417 5.48880 5.54938 5.68001 5.70898 5.75663 5.78796 5.81739 5.83954 5.98785 5.99549 6.02099 6.06491 6.09717 6.18949 6.24044 6.29720 6.37205 6.42985 6.49563 6.51349 6.60026 6.76727 6.92109 7.06529 7.24187 7.38766 7.45036 7.61210 7.90987 8.02348 8.43363 9.12100 9.63559 10.10105 10.63854 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.005611 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.288798 B = 4989.175322 C = 6046.136862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.052 3.948 4 C 0.110 3.890 5 N -0.432 5.432 6 C -0.328 4.328 7 H 0.089 0.911 8 C 0.039 3.961 9 N -0.861 5.861 10 Si 0.911 3.089 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.505 3.495 15 O -0.588 6.588 16 C -0.169 4.169 17 C -0.084 4.084 18 C -0.102 4.102 19 C -0.109 4.109 20 C -0.094 4.094 21 C -0.146 4.146 22 C -0.109 4.109 23 C -0.083 4.083 24 H 0.032 0.968 25 H 0.075 0.925 26 H 0.030 0.970 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.269 0.731 32 H 0.121 0.879 33 H 0.059 0.941 34 H 0.120 0.880 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.481 -8.344 -4.011 10.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.026 4.026 4 C -0.014 4.014 5 N -0.149 5.149 6 C -0.456 4.456 7 H 0.106 0.894 8 C -0.166 4.166 9 N -0.498 5.498 10 Si 0.737 3.263 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.207 1.207 14 C 0.297 3.703 15 O -0.475 6.475 16 C -0.190 4.190 17 C -0.087 4.087 18 C -0.139 4.139 19 C -0.146 4.146 20 C -0.113 4.113 21 C -0.203 4.203 22 C -0.146 4.146 23 C -0.121 4.121 24 H 0.050 0.950 25 H 0.094 0.906 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.078 0.922 34 H 0.137 0.863 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.354 -8.620 -3.441 10.252 hybrid contribution -0.282 1.203 -0.849 1.499 sum -4.636 -7.417 -4.291 9.742 Atomic orbital electron populations 1.22617 0.83428 1.01589 0.98842 1.88119 1.17472 1.28242 1.95079 1.23073 0.96522 0.84203 0.98765 1.21542 0.89502 1.02230 0.88122 1.43181 1.56635 1.05260 1.09821 1.19439 1.41811 0.96846 0.87552 0.89371 1.25391 0.94297 0.99253 0.97661 1.69846 1.30359 1.20492 1.29095 0.86124 0.78352 0.80572 0.81204 1.19192 1.20559 1.20689 1.18453 0.80291 0.83219 0.88300 1.90486 1.57447 1.62104 1.37507 1.22598 1.03866 0.94275 0.98271 1.22331 0.95954 0.94049 0.96332 1.21379 0.99462 0.96350 0.96700 1.21722 0.98029 0.97537 0.97360 1.21157 0.98307 0.95423 0.96404 1.21844 0.99930 0.98356 1.00218 1.21603 0.99253 0.96519 0.97263 1.20800 0.97268 0.97876 0.96115 0.94953 0.90620 0.95181 0.94447 0.93409 0.91572 0.86323 0.92063 0.86071 0.92206 0.86253 0.92393 0.92455 0.91501 0.93158 0.92979 0.92889 0.91996 0.92422 0.91424 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.37 -8.04 10.22 -35.23 -0.36 -8.40 16 3 C 0.05 1.10 6.25 37.16 0.23 1.33 16 4 C 0.11 2.67 5.50 -4.04 -0.02 2.65 16 5 N -0.43 -11.09 2.49 -116.20 -0.29 -11.38 16 6 C -0.33 -8.36 8.38 -15.02 -0.13 -8.48 16 7 H 0.09 2.19 6.86 -52.49 -0.36 1.83 16 8 C 0.04 0.98 5.03 -17.45 -0.09 0.89 16 9 N -0.86 -22.43 11.30 55.50 0.63 -21.80 16 10 Si 0.91 19.20 29.60 -169.99 -5.03 14.17 16 11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 14 C 0.51 12.83 7.15 -12.73 -0.09 12.74 16 15 O -0.59 -15.71 12.68 5.22 0.07 -15.64 16 16 C -0.17 -3.72 8.84 -37.84 -0.33 -4.06 16 17 C -0.08 -1.58 5.36 -100.57 -0.54 -2.12 16 18 C -0.10 -1.90 5.24 -27.26 -0.14 -2.04 16 19 C -0.11 -1.62 5.23 -26.41 -0.14 -1.76 16 20 C -0.09 -1.20 2.62 -90.66 -0.24 -1.44 16 21 C -0.15 -1.55 9.18 37.16 0.34 -1.21 16 22 C -0.11 -1.40 5.22 -26.63 -0.14 -1.54 16 23 C -0.08 -1.25 6.04 -27.49 -0.17 -1.41 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.03 0.43 8.14 -51.92 -0.42 0.00 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.68 7.26 -51.93 -0.38 1.30 16 30 H 0.12 2.99 5.41 -51.93 -0.28 2.70 16 31 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.12 2.60 6.56 -52.48 -0.34 2.26 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.12 2.65 5.04 -51.96 -0.26 2.39 16 35 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -28.86 348.15 -7.59 -36.45 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.51 Total: 6.16 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.34 Total: -4.81 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.34 Total: -33.17 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.29 Total: -24.04 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.86 -7.59 -36.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837234434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.908 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds