Wall clock time and date at job start Tue Mar 31 2020 07:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42892 * 113.99951 * 2 1 4 4 C 1.53008 * 109.47188 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47096 * 64.99638 * 4 3 2 6 6 C 1.36816 * 119.99875 * 84.55878 * 5 4 3 7 7 H 1.07993 * 120.00229 * 217.02874 * 6 5 4 8 8 C 1.39081 * 119.99720 * 36.76141 * 6 5 4 9 9 N 1.31343 * 120.00274 * 20.87868 * 8 6 5 10 10 Si 1.86806 * 119.99618 * 200.88240 * 8 6 5 11 11 H 1.48491 * 109.47395 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.46942 * 119.99880 * 10 8 6 13 13 H 1.48501 * 109.46858 * 239.99455 * 10 8 6 14 14 C 1.34775 * 120.00206 * 264.55771 * 5 4 3 15 15 O 1.21663 * 119.99882 * 0.02562 * 14 5 4 16 16 C 1.46954 * 120.00135 * 180.02562 * 14 5 4 17 17 C 1.33114 * 120.00138 * 187.44580 * 16 14 5 18 18 C 1.51270 * 120.85188 * 15.20419 * 17 16 14 19 19 C 1.53658 * 108.31635 * 128.61558 * 18 17 16 20 20 C 1.52960 * 109.32107 * 54.86163 * 19 18 17 21 21 C 1.53003 * 109.35313 * 176.20649 * 20 19 18 22 22 C 1.52965 * 109.81735 * 296.27336 * 20 19 18 23 23 C 1.51268 * 120.85227 * 195.48417 * 17 16 14 24 24 H 1.09001 * 109.47704 * 60.00144 * 1 2 3 25 25 H 1.09003 * 109.47402 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47372 * 299.99663 * 1 2 3 27 27 H 1.08996 * 109.47567 * 60.00042 * 3 2 1 28 28 H 1.09003 * 109.47270 * 300.00166 * 3 2 1 29 29 H 1.09002 * 109.46309 * 304.99948 * 4 3 2 30 30 H 1.08997 * 109.47150 * 185.00317 * 4 3 2 31 31 H 0.97000 * 119.99884 * 180.02562 * 9 8 6 32 32 H 1.08003 * 119.99787 * 7.45104 * 16 14 5 33 33 H 1.09007 * 109.62727 * 248.39185 * 18 17 16 34 34 H 1.09003 * 109.62470 * 8.95661 * 18 17 16 35 35 H 1.09008 * 109.62547 * 294.84637 * 19 18 17 36 36 H 1.08992 * 109.42104 * 174.74988 * 19 18 17 37 37 H 1.08991 * 109.41565 * 56.37950 * 20 19 18 38 38 H 1.09004 * 109.46782 * 180.31808 * 21 20 19 39 39 H 1.08998 * 109.46969 * 300.31546 * 21 20 19 40 40 H 1.08997 * 109.47325 * 60.32037 * 21 20 19 41 41 H 1.09000 * 109.48193 * 303.61871 * 22 20 19 42 42 H 1.09000 * 109.48078 * 183.57965 * 22 20 19 43 43 H 1.09004 * 109.62363 * 351.03466 * 23 17 16 44 44 H 1.09000 * 109.62972 * 111.41750 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.1585 1.3330 -2.3696 7 1 3.8951 0.9439 -3.3420 8 6 4.6785 2.6176 -2.2521 9 7 5.3646 2.9532 -1.1836 10 14 4.4011 3.8656 -3.6142 11 1 3.6036 3.2430 -4.7011 12 1 3.6680 5.0370 -3.0703 13 1 5.7116 4.3089 -4.1538 14 6 4.2005 -0.7635 -1.3043 15 8 4.0375 -1.4472 -0.3112 16 6 4.6426 -1.3857 -2.5601 17 6 4.7221 -2.7111 -2.6544 18 6 4.0534 -3.6030 -1.6319 19 6 3.1946 -4.6350 -2.3792 20 6 4.0660 -5.3807 -3.3914 21 6 3.2350 -6.4722 -4.0688 22 6 4.5825 -4.4044 -4.4497 23 6 5.4887 -3.3639 -3.7833 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.6886 1.8463 0.8899 28 1 1.6885 1.8463 -0.8900 29 1 3.8513 0.5681 0.8410 30 1 3.9785 2.1764 0.0890 31 1 5.7269 3.8493 -1.1016 32 1 4.9032 -0.7675 -3.4065 33 1 4.8125 -4.1142 -1.0397 34 1 3.4201 -3.0015 -0.9797 35 1 2.3840 -4.1270 -2.9019 36 1 2.7782 -5.3453 -1.6651 37 1 4.9111 -5.8363 -2.8756 38 1 3.8558 -7.0086 -4.7865 39 1 2.8664 -7.1684 -3.3155 40 1 2.3909 -6.0173 -4.5871 41 1 3.7391 -3.9020 -4.9233 42 1 5.1496 -4.9514 -5.2028 43 1 5.7779 -2.6087 -4.5142 44 1 6.3800 -3.8505 -3.3873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837234434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:49 Heat of formation + Delta-G solvation = -91.947361 kcal Electronic energy + Delta-G solvation = -23213.822029 eV Core-core repulsion = 19937.593593 eV Total energy + Delta-G solvation = -3276.228435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.71105 -39.33945 -38.42816 -36.64741 -34.38449 -33.50822 -31.79867 -31.26382 -29.43100 -27.23613 -26.78764 -25.42755 -23.81900 -23.48361 -21.52302 -20.93940 -19.77833 -18.12983 -17.91619 -17.23626 -16.94543 -16.24475 -16.18830 -15.85343 -15.36683 -15.25455 -15.11749 -14.95369 -14.61411 -14.27367 -13.77527 -13.53210 -13.39894 -13.26919 -13.11227 -12.96352 -12.71143 -12.64180 -12.46152 -12.34049 -12.23335 -12.05034 -11.89570 -11.83598 -11.55420 -11.34627 -11.01676 -10.92199 -10.53896 -9.94744 -9.61811 -9.32728 -8.26937 -6.01005 0.71328 1.44189 1.47719 1.60293 2.31786 2.64973 2.99533 3.07379 3.27980 3.87950 3.91972 4.01203 4.19994 4.25663 4.28800 4.38036 4.48284 4.52711 4.55731 4.58085 4.62711 4.65347 4.74642 4.77647 4.82676 4.87010 4.99474 5.04498 5.05533 5.11029 5.21942 5.26047 5.28578 5.33256 5.43930 5.46844 5.50129 5.60077 5.81406 5.97044 6.14405 6.37240 6.51100 7.17921 7.70574 8.17901 8.74349 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.005611 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.288798 B = 4989.175322 C = 6046.136862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.063 3.937 4 C 0.109 3.891 5 N -0.444 5.444 6 C -0.345 4.345 7 H 0.089 0.911 8 C 0.002 3.998 9 N -0.893 5.893 10 Si 0.981 3.019 11 H -0.261 1.261 12 H -0.275 1.275 13 H -0.279 1.279 14 C 0.491 3.509 15 O -0.615 6.615 16 C -0.214 4.214 17 C -0.053 4.053 18 C -0.105 4.105 19 C -0.102 4.102 20 C -0.092 4.092 21 C -0.142 4.142 22 C -0.104 4.104 23 C -0.084 4.084 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.108 0.892 31 H 0.273 0.727 32 H 0.121 0.879 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.010 -9.563 -6.034 12.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.014 4.014 4 C -0.015 4.015 5 N -0.161 5.161 6 C -0.473 4.473 7 H 0.106 0.894 8 C -0.200 4.200 9 N -0.531 5.531 10 Si 0.805 3.195 11 H -0.185 1.185 12 H -0.200 1.200 13 H -0.205 1.205 14 C 0.284 3.716 15 O -0.505 6.505 16 C -0.235 4.235 17 C -0.055 4.055 18 C -0.142 4.142 19 C -0.139 4.139 20 C -0.110 4.110 21 C -0.199 4.199 22 C -0.142 4.142 23 C -0.121 4.121 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.125 0.875 31 H 0.083 0.917 32 H 0.139 0.861 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.897 -9.841 -5.468 12.277 hybrid contribution -0.118 1.458 -0.138 1.470 sum -5.015 -8.382 -5.606 11.263 Atomic orbital electron populations 1.22858 0.80602 1.03091 1.00399 1.88064 1.20640 1.28412 1.95370 1.22862 0.94301 0.84468 0.99793 1.21476 0.91978 1.00799 0.87201 1.43400 1.56977 1.05602 1.10167 1.19642 1.42554 0.97474 0.87607 0.89361 1.26202 0.93440 1.00478 0.99924 1.69943 1.31074 1.21095 1.30971 0.85062 0.78182 0.77892 0.78377 1.18476 1.19989 1.20478 1.19075 0.79878 0.83281 0.89342 1.90464 1.58714 1.62603 1.38691 1.22441 1.08024 0.95516 0.97483 1.22858 0.92785 0.93179 0.96695 1.21296 0.99379 0.96827 0.96690 1.21670 0.97543 0.96786 0.97942 1.21148 0.98338 0.95753 0.95805 1.21793 0.99819 0.97670 1.00594 1.21609 0.98936 0.95955 0.97682 1.20933 0.97650 0.98652 0.94896 0.94022 0.89248 0.92852 0.91693 0.93802 0.93951 0.87465 0.91706 0.86141 0.91978 0.90237 0.93192 0.91255 0.90876 0.91384 0.92327 0.92915 0.92464 0.89391 0.90735 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.41 -17.93 10.22 -148.98 -1.52 -19.45 16 3 C 0.06 2.72 6.25 71.98 0.45 3.17 16 4 C 0.11 5.58 5.50 86.38 0.48 6.05 16 5 N -0.44 -23.87 2.49 -639.79 -1.59 -25.46 16 6 C -0.34 -18.07 8.38 84.12 0.70 -17.36 16 7 H 0.09 4.50 6.86 -2.91 -0.02 4.48 16 8 C 0.00 0.11 5.03 84.97 0.43 0.54 16 9 N -0.89 -47.61 11.30 21.69 0.25 -47.36 16 10 Si 0.98 39.40 29.60 68.60 2.03 41.43 16 11 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 12 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 13 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 14 C 0.49 26.21 7.15 86.53 0.62 26.83 16 15 O -0.62 -34.78 12.68 -4.23 -0.05 -34.84 16 16 C -0.21 -9.74 8.84 23.40 0.21 -9.53 16 17 C -0.05 -1.99 5.36 -17.24 -0.09 -2.08 16 18 C -0.11 -3.93 5.24 30.25 0.16 -3.77 16 19 C -0.10 -2.91 5.23 30.80 0.16 -2.75 16 20 C -0.09 -2.05 2.62 -10.82 -0.03 -2.08 16 21 C -0.14 -2.47 9.18 71.98 0.66 -1.81 16 22 C -0.10 -2.34 5.22 30.66 0.16 -2.18 16 23 C -0.08 -2.34 6.04 30.11 0.18 -2.16 16 24 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 2.29 7.26 -2.39 -0.02 2.27 16 30 H 0.11 5.66 5.41 -2.39 -0.01 5.64 16 31 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 32 H 0.12 5.37 6.56 -2.91 -0.02 5.35 16 33 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.08 3.70 5.04 -2.91 -0.01 3.69 16 35 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 2.00 7.94 -2.38 -0.02 1.98 16 44 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -65.33 348.15 5.40 -59.93 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.96 Total: 30.77 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 5.33 Total: -5.02 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.35 Total: -72.82 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -1.58 Total: -54.29 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -65.33 5.40 -59.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837234434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.015 kcal (2) G-P(sol) polarization free energy of solvation -65.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds