Wall clock time and date at job start Tue Mar 31 2020 07:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46682 * 2 1 4 4 C 1.33454 * 118.46016 * 95.70795 * 3 2 1 5 5 C 1.41796 * 118.78805 * 0.38896 * 4 3 2 6 6 O 1.21743 * 120.00123 * 260.79760 * 5 4 3 7 7 N 1.34781 * 120.00127 * 80.79872 * 5 4 3 8 8 C 1.46495 * 119.99916 * 180.02562 * 7 5 4 9 9 C 1.53007 * 109.46829 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46982 * 299.99824 * 9 8 7 11 11 C 1.52998 * 109.47078 * 59.99754 * 9 8 7 12 12 C 1.50698 * 109.47134 * 180.02562 * 9 8 7 13 13 H 1.08006 * 119.99669 * 357.82035 * 12 9 8 14 14 C 1.37875 * 120.00214 * 177.81664 * 12 9 8 15 15 N 1.31513 * 119.99856 * 2.87213 * 14 12 9 16 16 Si 1.86800 * 120.00222 * 182.86817 * 14 12 9 17 17 H 1.48501 * 109.47060 * 94.98303 * 16 14 12 18 18 H 1.48497 * 109.47064 * 214.98601 * 16 14 12 19 19 H 1.48499 * 109.46805 * 334.98738 * 16 14 12 20 20 C 1.50419 * 122.42730 * 180.11153 * 4 3 2 21 21 C 1.53215 * 109.56188 * 342.61051 * 20 4 3 22 22 C 1.53476 * 108.26147 * 47.35055 * 21 20 4 23 23 O 1.34353 * 118.45807 * 275.96972 * 3 2 1 24 24 H 1.09001 * 109.46999 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47224 * 299.99623 * 1 2 3 26 26 H 1.09003 * 109.47269 * 60.00000 * 1 2 3 27 27 H 1.09001 * 109.47224 * 240.00377 * 2 1 3 28 28 H 1.08998 * 109.47395 * 119.99268 * 2 1 3 29 29 H 0.97001 * 119.99774 * 359.72063 * 7 5 4 30 30 H 1.08998 * 109.47218 * 299.99173 * 8 7 5 31 31 H 1.09004 * 109.47309 * 59.99973 * 8 7 5 32 32 H 1.08997 * 109.47247 * 53.91931 * 10 9 8 33 33 H 1.08994 * 109.47170 * 173.92181 * 10 9 8 34 34 H 1.09006 * 109.47209 * 293.92252 * 10 9 8 35 35 H 1.08991 * 109.47086 * 60.00387 * 11 9 8 36 36 H 1.08999 * 109.46759 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.47089 * 299.99821 * 11 9 8 38 38 H 0.97002 * 120.00205 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.45206 * 102.63160 * 20 4 3 40 40 H 1.08995 * 109.45697 * 222.59860 * 20 4 3 41 41 H 1.08994 * 109.70322 * 167.04617 * 21 20 4 42 42 H 1.08998 * 109.70132 * 287.61671 * 21 20 4 43 43 H 1.09001 * 109.70673 * 56.99290 * 22 21 20 44 44 H 1.09001 * 109.70828 * 177.56138 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3542 1.9816 1.1674 5 6 2.2183 1.2161 2.3532 6 8 1.2371 1.3574 3.0599 7 7 3.1753 0.3319 2.6980 8 6 3.0346 -0.4594 3.9227 9 6 4.2482 -1.3782 4.0785 10 6 4.3360 -2.3159 2.8727 11 6 5.5207 -0.5328 4.1608 12 6 4.1032 -2.1927 5.3381 13 1 3.2500 -2.0425 5.9831 14 6 5.0596 -3.1297 5.6671 15 7 6.1266 -3.2733 4.9119 16 14 4.8399 -4.1952 7.1856 17 1 4.2168 -5.4864 6.7984 18 1 6.1643 -4.4512 7.8065 19 1 3.9638 -3.4951 8.1589 20 6 2.8617 3.3938 1.2712 21 6 3.3413 3.8690 -0.1041 22 6 2.2650 3.5122 -1.1385 23 8 2.1297 2.0655 -1.1748 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.9552 0.2164 2.1328 30 1 2.9717 0.2086 4.7817 31 1 2.1282 -1.0621 3.8639 32 1 4.3318 -1.7285 1.9546 33 1 5.2575 -2.8952 2.9293 34 1 3.4810 -2.9921 2.8752 35 1 5.4581 0.1352 5.0198 36 1 6.3852 -1.1874 4.2713 37 1 5.6253 0.0560 3.2495 38 1 6.7994 -3.9328 5.1431 39 1 2.0589 4.0433 1.6200 40 1 3.6912 3.4305 1.9773 41 1 3.4923 4.9483 -0.0880 42 1 4.2767 3.3709 -0.3594 43 1 1.3152 3.9630 -0.8509 44 1 2.5632 3.8789 -2.1207 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837890113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:39 Heat of formation + Delta-G solvation = -79.849600 kcal Electronic energy + Delta-G solvation = -23292.080592 eV Core-core repulsion = 20016.376755 eV Total energy + Delta-G solvation = -3275.703837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -40.68794 -38.86036 -36.31862 -34.34872 -34.06288 -33.08521 -30.91430 -30.08874 -26.21342 -25.71161 -25.55112 -25.14190 -24.15241 -21.95686 -20.95092 -18.92851 -18.60495 -17.52166 -16.39606 -15.95652 -15.63551 -15.03544 -14.84051 -14.71035 -14.16308 -13.97034 -13.74383 -13.60318 -13.16074 -13.01726 -12.87103 -12.54263 -12.15584 -12.07736 -11.92306 -11.40038 -11.30803 -11.16604 -11.09084 -10.98248 -10.85399 -10.66713 -10.50571 -10.34716 -10.19999 -9.60080 -9.54281 -9.20066 -8.75443 -8.42065 -8.26546 -8.21696 -6.00650 -4.09835 1.86904 2.99842 3.15623 3.29066 3.36542 3.40627 4.05473 4.42209 4.55102 4.58078 4.71692 4.95254 5.12812 5.15482 5.26560 5.26950 5.31987 5.45735 5.47860 5.61743 5.74196 5.88369 5.94796 6.01223 6.13514 6.18960 6.26949 6.36482 6.37172 6.55124 6.82325 6.84925 6.96653 7.03993 7.09548 7.32850 7.38193 7.58061 7.71778 8.01759 8.10949 8.20274 8.40476 8.78954 8.91254 9.55750 11.01258 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027730 B = 0.004182 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.483933 B = 6693.225515 C = 6919.310375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C 0.134 3.866 4 C -0.288 4.288 5 C 0.568 3.432 6 O -0.554 6.554 7 N -0.714 5.714 8 C 0.130 3.870 9 C 0.056 3.944 10 C -0.129 4.129 11 C -0.129 4.129 12 C -0.506 4.506 13 H 0.057 0.943 14 C 0.067 3.933 15 N -0.886 5.886 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.059 4.059 21 C -0.156 4.156 22 C 0.058 3.942 23 O -0.312 6.312 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.398 0.602 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.006 0.994 33 H 0.082 0.918 34 H 0.029 0.971 35 H 0.026 0.974 36 H 0.084 0.916 37 H 0.006 0.994 38 H 0.259 0.741 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 11.022 -12.972 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C 0.086 3.914 4 C -0.293 4.293 5 C 0.355 3.645 6 O -0.433 6.433 7 N -0.365 5.365 8 C 0.008 3.992 9 C 0.055 3.945 10 C -0.186 4.186 11 C -0.187 4.187 12 C -0.544 4.544 13 H 0.075 0.925 14 C -0.134 4.134 15 N -0.524 5.524 16 Si 0.720 3.280 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.096 4.096 21 C -0.194 4.194 22 C -0.016 4.016 23 O -0.225 6.225 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.233 0.767 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.101 0.899 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.102 0.898 37 H 0.025 0.975 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.101 10.920 -12.646 17.469 hybrid contribution 0.395 -0.413 0.775 0.963 sum -4.706 10.506 -11.871 16.537 Atomic orbital electron populations 1.21710 0.93580 1.02484 1.02528 1.20830 0.97294 0.90039 1.04753 1.20910 0.92951 0.93572 0.83933 1.19908 1.15888 0.99701 0.93789 1.16657 0.83098 0.79640 0.85131 1.90789 1.30670 1.67838 1.54032 1.46532 1.23070 1.40113 1.26780 1.21697 1.00409 0.92966 0.84164 1.18354 0.89495 0.91419 0.95225 1.21812 1.02862 0.99274 0.94685 1.21823 1.02245 0.98393 0.96262 1.20997 1.07685 1.19441 1.06314 0.92461 1.24872 0.94971 0.96949 0.96652 1.69828 1.09584 1.34760 1.38254 0.86575 0.77429 0.80793 0.83187 1.20783 1.21304 1.19885 1.20097 1.00831 0.91662 0.97034 1.22193 0.99293 1.02389 0.95508 1.23443 0.99254 0.78034 1.00852 1.86141 1.86902 1.21395 1.28038 0.91693 0.91717 0.92515 0.89777 0.88460 0.76669 0.92827 0.92775 0.97527 0.89904 0.95224 0.95499 0.89757 0.97503 0.93081 0.90761 0.90287 0.89727 0.90271 0.91276 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.89 37.16 0.37 -1.46 16 2 C -0.09 -1.23 5.81 -27.88 -0.16 -1.40 16 3 C 0.13 1.85 5.95 -35.98 -0.21 1.64 16 4 C -0.29 -4.31 5.37 -105.07 -0.56 -4.87 16 5 C 0.57 10.38 5.12 -14.90 -0.08 10.30 16 6 O -0.55 -12.12 17.09 5.15 0.09 -12.03 16 7 N -0.71 -13.10 4.14 -63.17 -0.26 -13.37 16 8 C 0.13 2.80 4.50 -4.04 -0.02 2.78 16 9 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 10 C -0.13 -2.89 8.04 37.16 0.30 -2.59 16 11 C -0.13 -2.94 8.10 37.16 0.30 -2.64 16 12 C -0.51 -13.28 8.01 -34.44 -0.28 -13.55 16 13 H 0.06 1.52 7.75 -52.48 -0.41 1.12 16 14 C 0.07 1.76 5.14 -17.82 -0.09 1.67 16 15 N -0.89 -23.64 9.43 55.43 0.52 -23.11 16 16 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.06 -0.72 5.89 -27.91 -0.16 -0.88 16 21 C -0.16 -1.40 6.23 -26.37 -0.16 -1.57 16 22 C 0.06 0.52 7.15 37.40 0.27 0.79 16 23 O -0.31 -3.82 10.40 -14.90 -0.15 -3.98 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.10 1.49 5.97 -51.93 -0.31 1.18 16 29 H 0.40 6.81 6.11 -40.82 -0.25 6.56 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 33 H 0.08 2.05 6.20 -51.93 -0.32 1.73 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 2.11 6.14 -51.93 -0.32 1.79 16 37 H 0.01 0.12 6.87 -51.93 -0.36 -0.23 16 38 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 345.68 15.07 5.21 5.21 Total: -1.00 -29.20 345.68 -7.56 -36.76 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.37 Total: 5.33 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.58 Total: -10.57 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.26 Total: -36.48 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.07 Total: -16.01 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.20 -7.56 -36.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837890113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.087 kcal (2) G-P(sol) polarization free energy of solvation -29.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds