Wall clock time and date at job start Tue Mar 31 2020 07:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46682 * 2 1 4 4 C 1.33454 * 118.46016 * 95.70795 * 3 2 1 5 5 C 1.41796 * 118.78805 * 0.38896 * 4 3 2 6 6 O 1.21743 * 120.00123 * 260.79760 * 5 4 3 7 7 N 1.34781 * 120.00127 * 80.79872 * 5 4 3 8 8 C 1.46495 * 119.99916 * 180.02562 * 7 5 4 9 9 C 1.53007 * 109.46829 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46982 * 299.99824 * 9 8 7 11 11 C 1.52998 * 109.47078 * 59.99754 * 9 8 7 12 12 C 1.50698 * 109.47134 * 180.02562 * 9 8 7 13 13 H 1.08006 * 119.99669 * 357.82035 * 12 9 8 14 14 C 1.37875 * 120.00214 * 177.81664 * 12 9 8 15 15 N 1.31513 * 119.99856 * 2.87213 * 14 12 9 16 16 Si 1.86800 * 120.00222 * 182.86817 * 14 12 9 17 17 H 1.48501 * 109.47060 * 94.98303 * 16 14 12 18 18 H 1.48497 * 109.47064 * 214.98601 * 16 14 12 19 19 H 1.48499 * 109.46805 * 334.98738 * 16 14 12 20 20 C 1.50419 * 122.42730 * 180.11153 * 4 3 2 21 21 C 1.53215 * 109.56188 * 342.61051 * 20 4 3 22 22 C 1.53476 * 108.26147 * 47.35055 * 21 20 4 23 23 O 1.34353 * 118.45807 * 275.96972 * 3 2 1 24 24 H 1.09001 * 109.46999 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47224 * 299.99623 * 1 2 3 26 26 H 1.09003 * 109.47269 * 60.00000 * 1 2 3 27 27 H 1.09001 * 109.47224 * 240.00377 * 2 1 3 28 28 H 1.08998 * 109.47395 * 119.99268 * 2 1 3 29 29 H 0.97001 * 119.99774 * 359.72063 * 7 5 4 30 30 H 1.08998 * 109.47218 * 299.99173 * 8 7 5 31 31 H 1.09004 * 109.47309 * 59.99973 * 8 7 5 32 32 H 1.08997 * 109.47247 * 53.91931 * 10 9 8 33 33 H 1.08994 * 109.47170 * 173.92181 * 10 9 8 34 34 H 1.09006 * 109.47209 * 293.92252 * 10 9 8 35 35 H 1.08991 * 109.47086 * 60.00387 * 11 9 8 36 36 H 1.08999 * 109.46759 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.47089 * 299.99821 * 11 9 8 38 38 H 0.97002 * 120.00205 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.45206 * 102.63160 * 20 4 3 40 40 H 1.08995 * 109.45697 * 222.59860 * 20 4 3 41 41 H 1.08994 * 109.70322 * 167.04617 * 21 20 4 42 42 H 1.08998 * 109.70132 * 287.61671 * 21 20 4 43 43 H 1.09001 * 109.70673 * 56.99290 * 22 21 20 44 44 H 1.09001 * 109.70828 * 177.56138 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3542 1.9816 1.1674 5 6 2.2183 1.2161 2.3532 6 8 1.2371 1.3574 3.0599 7 7 3.1753 0.3319 2.6980 8 6 3.0346 -0.4594 3.9227 9 6 4.2482 -1.3782 4.0785 10 6 4.3360 -2.3159 2.8727 11 6 5.5207 -0.5328 4.1608 12 6 4.1032 -2.1927 5.3381 13 1 3.2500 -2.0425 5.9831 14 6 5.0596 -3.1297 5.6671 15 7 6.1266 -3.2733 4.9119 16 14 4.8399 -4.1952 7.1856 17 1 4.2168 -5.4864 6.7984 18 1 6.1643 -4.4512 7.8065 19 1 3.9638 -3.4951 8.1589 20 6 2.8617 3.3938 1.2712 21 6 3.3413 3.8690 -0.1041 22 6 2.2650 3.5122 -1.1385 23 8 2.1297 2.0655 -1.1748 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.9552 0.2164 2.1328 30 1 2.9717 0.2086 4.7817 31 1 2.1282 -1.0621 3.8639 32 1 4.3318 -1.7285 1.9546 33 1 5.2575 -2.8952 2.9293 34 1 3.4810 -2.9921 2.8752 35 1 5.4581 0.1352 5.0198 36 1 6.3852 -1.1874 4.2713 37 1 5.6253 0.0560 3.2495 38 1 6.7994 -3.9328 5.1431 39 1 2.0589 4.0433 1.6200 40 1 3.6912 3.4305 1.9773 41 1 3.4923 4.9483 -0.0880 42 1 4.2767 3.3709 -0.3594 43 1 1.3152 3.9630 -0.8509 44 1 2.5632 3.8789 -2.1207 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837890113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:39 Heat of formation + Delta-G solvation = -96.508043 kcal Electronic energy + Delta-G solvation = -23292.802957 eV Core-core repulsion = 20016.376755 eV Total energy + Delta-G solvation = -3276.426201 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.83824 -40.18556 -38.10825 -35.41812 -35.08332 -34.78677 -32.67438 -31.17321 -27.61322 -27.57323 -27.13953 -26.53077 -25.40919 -23.00485 -22.20132 -20.61151 -19.92678 -18.76153 -17.77087 -17.42534 -16.96282 -16.67735 -16.25979 -16.01227 -15.46143 -15.17992 -14.83880 -14.76919 -14.58845 -14.43761 -14.16895 -14.00425 -13.89125 -13.22791 -13.10345 -13.02727 -12.83597 -12.69081 -12.58941 -12.27049 -12.23291 -12.13081 -12.12204 -11.72980 -11.48698 -11.42213 -11.28805 -10.84758 -10.67052 -10.40054 -9.91688 -9.31400 -8.02214 -6.17222 0.77530 1.42295 1.45504 1.53978 1.62020 2.17539 2.43508 2.65778 3.21810 3.59633 3.78597 3.92811 4.09718 4.18921 4.24074 4.26776 4.36332 4.47522 4.51557 4.53723 4.61060 4.72105 4.75080 4.88582 4.92268 4.96833 5.00273 5.05595 5.10653 5.15202 5.18087 5.19670 5.24887 5.30693 5.36781 5.59630 5.66813 5.68214 6.13456 6.20820 6.34548 6.43054 6.67442 6.86630 7.31791 7.50299 8.97336 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027730 B = 0.004182 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.483933 B = 6693.225515 C = 6919.310375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 C 0.153 3.847 4 C -0.314 4.314 5 C 0.575 3.425 6 O -0.595 6.595 7 N -0.706 5.706 8 C 0.147 3.853 9 C 0.052 3.948 10 C -0.117 4.117 11 C -0.119 4.119 12 C -0.529 4.529 13 H 0.044 0.956 14 C 0.030 3.970 15 N -0.899 5.899 16 Si 0.945 3.055 17 H -0.279 1.279 18 H -0.283 1.283 19 H -0.276 1.276 20 C -0.060 4.060 21 C -0.147 4.147 22 C 0.051 3.949 23 O -0.315 6.315 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.406 0.594 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.035 0.965 33 H 0.061 0.939 34 H 0.019 0.981 35 H 0.017 0.983 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.260 0.740 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 12.007 -15.000 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C 0.104 3.896 4 C -0.319 4.319 5 C 0.364 3.636 6 O -0.477 6.477 7 N -0.357 5.357 8 C 0.023 3.977 9 C 0.051 3.949 10 C -0.174 4.174 11 C -0.177 4.177 12 C -0.567 4.567 13 H 0.062 0.938 14 C -0.170 4.170 15 N -0.537 5.537 16 Si 0.771 3.229 17 H -0.205 1.205 18 H -0.208 1.208 19 H -0.201 1.201 20 C -0.098 4.098 21 C -0.185 4.185 22 C -0.023 4.023 23 O -0.228 6.228 24 H 0.094 0.906 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.123 0.877 28 H 0.093 0.907 29 H 0.243 0.757 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.132 0.868 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.865 11.917 -14.702 19.540 hybrid contribution 0.299 -0.695 1.351 1.549 sum -4.565 11.222 -13.350 18.028 Atomic orbital electron populations 1.21662 0.92977 1.03126 1.02005 1.20882 0.97838 0.90202 1.04639 1.20878 0.91046 0.93574 0.84107 1.19840 1.18604 1.00868 0.92544 1.17130 0.81907 0.78916 0.85618 1.90764 1.32235 1.68951 1.55754 1.46369 1.23640 1.39894 1.25818 1.21270 0.99025 0.92399 0.84982 1.18354 0.90307 0.91684 0.94555 1.21637 1.01193 0.98986 0.95625 1.21660 1.00844 0.97895 0.97255 1.21262 1.07471 1.20477 1.07528 0.93819 1.25437 0.94834 0.97852 0.98882 1.69927 1.09785 1.34950 1.39081 0.85755 0.77312 0.79331 0.80466 1.20458 1.20846 1.20133 1.20162 1.00456 0.89993 0.99196 1.22186 0.99008 1.04110 0.93169 1.23829 0.99735 0.75945 1.02744 1.86143 1.86239 1.23500 1.26887 0.90578 0.94310 0.90813 0.87736 0.90652 0.75696 0.94619 0.94231 0.94634 0.92004 0.96167 0.96365 0.91941 0.94762 0.93047 0.91086 0.90966 0.86817 0.90264 0.90663 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.89 71.98 0.71 -2.66 16 2 C -0.10 -2.51 5.81 29.85 0.17 -2.33 16 3 C 0.15 3.94 5.95 24.60 0.15 4.09 16 4 C -0.31 -9.08 5.37 -20.16 -0.11 -9.19 16 5 C 0.58 21.15 5.12 85.12 0.44 21.59 16 6 O -0.59 -26.72 17.09 -4.49 -0.08 -26.80 16 7 N -0.71 -25.90 4.14 -471.97 -1.96 -27.85 16 8 C 0.15 6.45 4.50 86.38 0.39 6.84 16 9 C 0.05 2.42 0.50 -52.93 -0.03 2.40 16 10 C -0.12 -5.22 8.04 71.98 0.58 -4.64 16 11 C -0.12 -5.38 8.10 71.98 0.58 -4.80 16 12 C -0.53 -28.26 8.01 25.60 0.21 -28.06 16 13 H 0.04 2.39 7.75 -2.91 -0.02 2.37 16 14 C 0.03 1.58 5.14 84.65 0.44 2.02 16 15 N -0.90 -48.14 9.43 21.45 0.20 -47.93 16 16 Si 0.94 42.86 29.54 68.60 2.03 44.89 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 C -0.06 -1.38 5.89 29.83 0.18 -1.21 16 21 C -0.15 -2.17 6.23 30.83 0.19 -1.98 16 22 C 0.05 0.71 7.15 72.14 0.52 1.23 16 23 O -0.32 -6.76 10.40 -76.22 -0.79 -7.55 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.08 2.26 5.97 -2.39 -0.01 2.25 16 29 H 0.41 13.49 6.11 -92.71 -0.57 12.92 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.03 1.34 6.71 -2.39 -0.02 1.32 16 33 H 0.06 3.05 6.20 -2.39 -0.01 3.03 16 34 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 3.13 6.14 -2.39 -0.01 3.11 16 37 H 0.03 1.32 6.87 -2.39 -0.02 1.30 16 38 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -63.62 345.68 4.22 -59.40 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.41 Total: 22.56 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 4.41 Total: -16.70 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -1.75 Total: -75.79 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.87 Total: -34.35 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -63.62 4.22 -59.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837890113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.113 kcal (2) G-P(sol) polarization free energy of solvation -63.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds