Wall clock time and date at job start Tue Mar 31 2020 07:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32995 * 119.99696 * 2 1 4 4 C 1.50696 * 120.00247 * 0.35403 * 3 2 1 5 5 C 1.53005 * 109.46823 * 61.06089 * 4 3 2 6 6 C 1.52998 * 109.47126 * 181.05917 * 4 3 2 7 7 C 1.52995 * 109.47614 * 301.06033 * 4 3 2 8 8 C 1.47099 * 120.00272 * 180.02562 * 2 1 3 9 9 O 1.21607 * 120.00230 * 183.04809 * 8 2 1 10 10 N 1.34781 * 119.99801 * 3.04426 * 8 2 1 11 11 C 1.47430 * 125.64602 * 174.65827 * 10 8 2 12 12 C 1.54910 * 104.82991 * 203.86635 * 11 10 8 13 13 C 1.55162 * 101.58197 * 322.99451 * 12 11 10 14 14 O 1.42899 * 110.71605 * 277.13712 * 13 12 11 15 15 C 1.50702 * 110.72000 * 154.04442 * 13 12 11 16 16 H 1.07997 * 119.99852 * 234.81818 * 15 13 12 17 17 C 1.37882 * 119.99868 * 54.82210 * 15 13 12 18 18 N 1.31509 * 120.00066 * 4.85045 * 17 15 13 19 19 Si 1.86801 * 119.99594 * 184.84593 * 17 15 13 20 20 H 1.48499 * 109.46852 * 85.00392 * 19 17 15 21 21 H 1.48505 * 109.46839 * 204.99817 * 19 17 15 22 22 H 1.48501 * 109.47446 * 324.99994 * 19 17 15 23 23 C 1.47022 * 125.64769 * 354.35409 * 10 8 2 24 24 H 1.09004 * 109.46979 * 234.39581 * 1 2 3 25 25 H 1.08996 * 109.47152 * 354.39916 * 1 2 3 26 26 H 1.08999 * 109.46668 * 114.39825 * 1 2 3 27 27 H 1.08003 * 119.99530 * 180.35679 * 3 2 1 28 28 H 1.09004 * 109.47016 * 71.01461 * 5 4 3 29 29 H 1.08998 * 109.46795 * 191.01313 * 5 4 3 30 30 H 1.08995 * 109.46749 * 311.01528 * 5 4 3 31 31 H 1.08995 * 109.47419 * 60.00046 * 6 4 3 32 32 H 1.09000 * 109.47136 * 180.02562 * 6 4 3 33 33 H 1.09004 * 109.47572 * 300.00087 * 6 4 3 34 34 H 1.09004 * 109.46611 * 63.08684 * 7 4 3 35 35 H 1.08993 * 109.47304 * 183.08769 * 7 4 3 36 36 H 1.09003 * 109.47324 * 303.09502 * 7 4 3 37 37 H 1.08998 * 110.36692 * 322.70062 * 11 10 8 38 38 H 1.08997 * 110.36462 * 84.92161 * 11 10 8 39 39 H 1.09000 * 111.00472 * 81.06253 * 12 11 10 40 40 H 1.08997 * 111.00353 * 204.91810 * 12 11 10 41 41 H 0.96698 * 114.00519 * 298.54849 * 14 13 12 42 42 H 0.96997 * 119.99911 * 179.97438 * 18 17 15 43 43 H 1.08996 * 109.88189 * 298.62195 * 23 10 8 44 44 H 1.09002 * 109.88208 * 59.78820 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4568 0.0081 5 6 0.5658 2.5455 1.2754 6 6 2.4123 3.6197 -0.0203 7 6 0.5123 2.5303 -1.2225 8 6 2.2426 -1.2739 -0.0006 9 8 3.4574 -1.2746 0.0554 10 7 1.5701 -2.4403 -0.0631 11 6 2.1789 -3.7777 -0.1829 12 6 1.0752 -4.6603 -0.8174 13 6 -0.2020 -4.0967 -0.1402 14 8 -0.3901 -4.6815 1.1500 15 6 -1.4117 -4.3264 -1.0090 16 1 -2.0390 -3.4941 -1.2922 17 6 -1.7177 -5.5991 -1.4423 18 7 -1.0109 -6.6249 -1.0208 19 14 -3.1362 -5.8662 -2.6281 20 1 -2.6629 -5.6595 -4.0204 21 1 -3.6505 -7.2515 -2.4806 22 1 -4.2226 -4.8999 -2.3260 23 6 0.1083 -2.5901 -0.0168 24 1 -0.3633 -0.5983 0.8356 25 1 -0.3633 1.0227 0.1003 26 1 -0.3632 -0.4245 -0.9359 27 1 3.2520 1.1518 -0.0058 28 1 1.2137 2.6901 2.1399 29 1 -0.1222 3.3869 1.1922 30 1 -0.0016 1.6228 1.3968 31 1 3.0198 3.5566 -0.9231 32 1 1.8673 4.5637 -0.0140 33 1 3.0579 3.5675 0.8564 34 1 -0.2309 1.7344 -1.1744 35 1 0.0088 3.4967 -1.2457 36 1 1.1135 2.4120 -2.1240 37 1 3.0538 -3.7394 -0.8319 38 1 2.4532 -4.1590 0.8006 39 1 1.0377 -4.5223 -1.8979 40 1 1.2209 -5.7103 -0.5639 41 1 -0.5116 -5.6407 1.1332 42 1 -1.2264 -7.5203 -1.3253 43 1 -0.2735 -2.2093 0.9305 44 1 -0.3463 -2.0488 -0.8465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844018220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:49 Heat of formation + Delta-G solvation = -55.354816 kcal Electronic energy + Delta-G solvation = -23347.404815 eV Core-core repulsion = 20072.763151 eV Total energy + Delta-G solvation = -3274.641664 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.96180 -38.31289 -37.13285 -34.31991 -32.83036 -32.30883 -29.62681 -28.68873 -28.07367 -27.32891 -26.29551 -25.13985 -23.48201 -21.02670 -19.89519 -19.15890 -17.75234 -17.12339 -16.08809 -15.72286 -15.30068 -14.98405 -14.63228 -14.44996 -14.24100 -14.11659 -13.75715 -13.18835 -12.95709 -12.51421 -12.37494 -12.22641 -12.14289 -11.90537 -11.78403 -11.55797 -11.38874 -11.34613 -11.25584 -11.09995 -10.87157 -10.77662 -10.58574 -10.53581 -10.25313 -10.00007 -9.52670 -9.12937 -8.88073 -8.68164 -8.24409 -7.89954 -6.31338 -4.40333 1.65287 3.17309 3.24934 3.26940 3.60351 3.65937 4.22687 4.61585 4.74180 4.88790 4.96078 5.04031 5.20916 5.29661 5.49219 5.52936 5.56318 5.62480 5.66706 5.72748 5.75989 5.81962 5.91007 5.93640 6.00605 6.04061 6.07448 6.15146 6.24658 6.28392 6.31059 6.38663 6.53927 6.66311 6.78058 6.93753 7.02215 7.30511 7.37739 7.69077 7.96678 8.15840 8.62186 8.66101 9.24056 9.34680 10.75548 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.004611 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.247187 B = 6070.351513 C = 6750.591317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.160 4.160 3 C -0.081 4.081 4 C -0.040 4.040 5 C -0.158 4.158 6 C -0.140 4.140 7 C -0.159 4.159 8 C 0.560 3.440 9 O -0.565 6.565 10 N -0.602 5.602 11 C 0.102 3.898 12 C -0.132 4.132 13 C 0.243 3.757 14 O -0.586 6.586 15 C -0.538 4.538 16 H 0.064 0.936 17 C 0.074 3.926 18 N -0.891 5.891 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.107 3.893 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.123 0.877 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.380 0.620 42 H 0.268 0.732 43 H 0.067 0.933 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 13.829 0.934 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.162 4.162 3 C -0.101 4.101 4 C -0.040 4.040 5 C -0.215 4.215 6 C -0.197 4.197 7 C -0.216 4.216 8 C 0.350 3.650 9 O -0.446 6.446 10 N -0.333 5.333 11 C -0.020 4.020 12 C -0.171 4.171 13 C 0.203 3.797 14 O -0.395 6.395 15 C -0.576 4.576 16 H 0.082 0.918 17 C -0.129 4.129 18 N -0.530 5.530 19 Si 0.728 3.272 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.014 4.014 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.097 0.903 27 H 0.141 0.859 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.230 0.770 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.320 14.297 1.143 14.529 hybrid contribution -0.693 -0.974 -0.900 1.497 sum 1.627 13.323 0.243 13.424 Atomic orbital electron populations 1.22111 0.91661 1.04214 1.03482 1.21367 0.96466 0.92794 1.05618 1.23424 0.99984 0.92226 0.94480 1.19629 0.95326 0.92761 0.96323 1.22282 0.99774 1.03033 0.96395 1.21892 0.98608 0.97162 1.02021 1.22328 0.99867 1.02584 0.96779 1.18085 0.86649 0.83349 0.76888 1.90715 1.13773 1.87543 1.52592 1.48525 1.08667 1.05925 1.70148 1.22407 0.97259 0.82067 1.00241 1.23278 0.94567 0.99463 0.99778 1.19556 0.92232 0.86351 0.81573 1.86135 1.95308 1.26877 1.31163 1.21446 1.10924 0.94051 1.31216 0.91814 1.24989 0.96459 0.95794 0.95702 1.69765 1.40008 0.99296 1.43897 0.86464 0.82078 0.77527 0.81109 1.20387 1.21085 1.19725 1.22717 0.78643 0.99174 1.00899 0.90234 0.88833 0.90303 0.85916 0.92494 0.92351 0.90391 0.92473 0.92505 0.92472 0.90287 0.92513 0.92464 0.92071 0.92242 0.91614 0.89186 0.77018 0.92209 0.91530 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 5.39 36.01 0.19 -1.97 16 2 C -0.16 -2.52 5.76 -102.85 -0.59 -3.11 16 3 C -0.08 -1.12 8.08 -36.13 -0.29 -1.41 16 4 C -0.04 -0.42 0.75 -155.66 -0.12 -0.54 16 5 C -0.16 -1.55 8.03 37.16 0.30 -1.25 16 6 C -0.14 -1.27 8.39 37.16 0.31 -0.96 16 7 C -0.16 -1.57 8.04 37.16 0.30 -1.27 16 8 C 0.56 11.15 7.78 -12.66 -0.10 11.05 16 9 O -0.56 -12.68 16.53 5.27 0.09 -12.60 16 10 N -0.60 -12.29 3.33 -171.91 -0.57 -12.86 16 11 C 0.10 2.13 6.88 -2.53 -0.02 2.11 16 12 C -0.13 -2.95 5.27 -24.58 -0.13 -3.08 16 13 C 0.24 5.65 0.85 -89.94 -0.08 5.58 16 14 O -0.59 -14.25 13.07 -35.23 -0.46 -14.71 16 15 C -0.54 -13.44 8.22 -34.44 -0.28 -13.72 16 16 H 0.06 1.56 7.66 -52.49 -0.40 1.16 16 17 C 0.07 1.84 5.24 -17.82 -0.09 1.75 16 18 N -0.89 -22.51 10.69 55.43 0.59 -21.91 16 19 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 23 C 0.11 2.18 4.51 -3.07 -0.01 2.17 16 24 H 0.08 1.14 5.59 -51.93 -0.29 0.85 16 25 H 0.09 1.04 2.58 -51.93 -0.13 0.90 16 26 H 0.08 1.10 6.19 -51.93 -0.32 0.78 16 27 H 0.12 1.82 7.43 -52.48 -0.39 1.43 16 28 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.08 0.81 4.81 -51.93 -0.25 0.56 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.80 4.64 -51.93 -0.24 0.56 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.51 8.04 -51.93 -0.42 1.10 16 40 H 0.09 2.09 7.37 -51.93 -0.38 1.71 16 41 H 0.38 9.27 7.84 45.56 0.36 9.62 16 42 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 43 H 0.07 1.32 6.15 -51.93 -0.32 1.00 16 44 H 0.08 1.57 5.28 -51.93 -0.27 1.29 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -27.73 332.71 -6.97 -34.70 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -6.00 Total: 12.42 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.61 Total: -4.65 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.02 Total: -34.78 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.37 Total: -27.30 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.73 -6.97 -34.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844018220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.659 kcal (2) G-P(sol) polarization free energy of solvation -27.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds