Wall clock time and date at job start Tue Mar 31 2020 07:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32995 * 119.99696 * 2 1 4 4 C 1.50696 * 120.00247 * 0.35403 * 3 2 1 5 5 C 1.53005 * 109.46823 * 61.06089 * 4 3 2 6 6 C 1.52998 * 109.47126 * 181.05917 * 4 3 2 7 7 C 1.52995 * 109.47614 * 301.06033 * 4 3 2 8 8 C 1.47099 * 120.00272 * 180.02562 * 2 1 3 9 9 O 1.21607 * 120.00230 * 183.04809 * 8 2 1 10 10 N 1.34781 * 119.99801 * 3.04426 * 8 2 1 11 11 C 1.47430 * 125.64602 * 174.65827 * 10 8 2 12 12 C 1.54910 * 104.82991 * 203.86635 * 11 10 8 13 13 C 1.55162 * 101.58197 * 322.99451 * 12 11 10 14 14 O 1.42899 * 110.71605 * 277.13712 * 13 12 11 15 15 C 1.50702 * 110.72000 * 154.04442 * 13 12 11 16 16 H 1.07997 * 119.99852 * 234.81818 * 15 13 12 17 17 C 1.37882 * 119.99868 * 54.82210 * 15 13 12 18 18 N 1.31509 * 120.00066 * 4.85045 * 17 15 13 19 19 Si 1.86801 * 119.99594 * 184.84593 * 17 15 13 20 20 H 1.48499 * 109.46852 * 85.00392 * 19 17 15 21 21 H 1.48505 * 109.46839 * 204.99817 * 19 17 15 22 22 H 1.48501 * 109.47446 * 324.99994 * 19 17 15 23 23 C 1.47022 * 125.64769 * 354.35409 * 10 8 2 24 24 H 1.09004 * 109.46979 * 234.39581 * 1 2 3 25 25 H 1.08996 * 109.47152 * 354.39916 * 1 2 3 26 26 H 1.08999 * 109.46668 * 114.39825 * 1 2 3 27 27 H 1.08003 * 119.99530 * 180.35679 * 3 2 1 28 28 H 1.09004 * 109.47016 * 71.01461 * 5 4 3 29 29 H 1.08998 * 109.46795 * 191.01313 * 5 4 3 30 30 H 1.08995 * 109.46749 * 311.01528 * 5 4 3 31 31 H 1.08995 * 109.47419 * 60.00046 * 6 4 3 32 32 H 1.09000 * 109.47136 * 180.02562 * 6 4 3 33 33 H 1.09004 * 109.47572 * 300.00087 * 6 4 3 34 34 H 1.09004 * 109.46611 * 63.08684 * 7 4 3 35 35 H 1.08993 * 109.47304 * 183.08769 * 7 4 3 36 36 H 1.09003 * 109.47324 * 303.09502 * 7 4 3 37 37 H 1.08998 * 110.36692 * 322.70062 * 11 10 8 38 38 H 1.08997 * 110.36462 * 84.92161 * 11 10 8 39 39 H 1.09000 * 111.00472 * 81.06253 * 12 11 10 40 40 H 1.08997 * 111.00353 * 204.91810 * 12 11 10 41 41 H 0.96698 * 114.00519 * 298.54849 * 14 13 12 42 42 H 0.96997 * 119.99911 * 179.97438 * 18 17 15 43 43 H 1.08996 * 109.88189 * 298.62195 * 23 10 8 44 44 H 1.09002 * 109.88208 * 59.78820 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4568 0.0081 5 6 0.5658 2.5455 1.2754 6 6 2.4123 3.6197 -0.0203 7 6 0.5123 2.5303 -1.2225 8 6 2.2426 -1.2739 -0.0006 9 8 3.4574 -1.2746 0.0554 10 7 1.5701 -2.4403 -0.0631 11 6 2.1789 -3.7777 -0.1829 12 6 1.0752 -4.6603 -0.8174 13 6 -0.2020 -4.0967 -0.1402 14 8 -0.3901 -4.6815 1.1500 15 6 -1.4117 -4.3264 -1.0090 16 1 -2.0390 -3.4941 -1.2922 17 6 -1.7177 -5.5991 -1.4423 18 7 -1.0109 -6.6249 -1.0208 19 14 -3.1362 -5.8662 -2.6281 20 1 -2.6629 -5.6595 -4.0204 21 1 -3.6505 -7.2515 -2.4806 22 1 -4.2226 -4.8999 -2.3260 23 6 0.1083 -2.5901 -0.0168 24 1 -0.3633 -0.5983 0.8356 25 1 -0.3633 1.0227 0.1003 26 1 -0.3632 -0.4245 -0.9359 27 1 3.2520 1.1518 -0.0058 28 1 1.2137 2.6901 2.1399 29 1 -0.1222 3.3869 1.1922 30 1 -0.0016 1.6228 1.3968 31 1 3.0198 3.5566 -0.9231 32 1 1.8673 4.5637 -0.0140 33 1 3.0579 3.5675 0.8564 34 1 -0.2309 1.7344 -1.1744 35 1 0.0088 3.4967 -1.2457 36 1 1.1135 2.4120 -2.1240 37 1 3.0538 -3.7394 -0.8319 38 1 2.4532 -4.1590 0.8006 39 1 1.0377 -4.5223 -1.8979 40 1 1.2209 -5.7103 -0.5639 41 1 -0.5116 -5.6407 1.1332 42 1 -1.2264 -7.5203 -1.3253 43 1 -0.2735 -2.2093 0.9305 44 1 -0.3463 -2.0488 -0.8465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844018220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:48 Heat of formation + Delta-G solvation = -72.419018 kcal Electronic energy + Delta-G solvation = -23348.144774 eV Core-core repulsion = 20072.763151 eV Total energy + Delta-G solvation = -3275.381623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.43954 -39.55641 -38.71889 -36.09489 -34.23237 -34.00698 -31.31289 -30.24702 -29.16563 -28.08061 -27.39554 -26.80122 -25.03730 -22.41905 -21.69828 -20.46993 -19.14130 -18.75447 -17.66987 -17.17555 -16.86607 -16.80192 -16.02692 -15.68503 -15.42738 -15.20062 -15.01461 -14.77473 -14.45334 -14.00483 -13.78687 -13.48617 -13.30216 -13.25102 -13.08963 -12.85665 -12.74911 -12.64678 -12.60325 -12.38479 -12.27386 -12.20327 -11.92717 -11.89944 -11.79184 -11.32894 -11.19721 -10.68348 -10.48532 -10.15815 -10.12093 -9.47262 -8.20701 -6.36026 0.38134 1.45311 1.48282 1.55909 2.05204 2.18586 2.42029 3.05272 3.44655 3.78174 3.87507 3.91496 4.07008 4.10708 4.17510 4.18965 4.30140 4.42398 4.50772 4.60566 4.72076 4.74287 4.81319 4.83692 4.89297 4.97469 4.99620 5.07832 5.08525 5.15717 5.19914 5.28316 5.29106 5.43408 5.44229 5.49091 5.50248 5.56627 5.70669 5.78154 6.08811 6.55047 6.70565 7.07989 7.31008 7.41113 8.84795 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.004611 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.247187 B = 6070.351513 C = 6750.591317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.184 4.184 3 C -0.056 4.056 4 C -0.040 4.040 5 C -0.158 4.158 6 C -0.139 4.139 7 C -0.159 4.159 8 C 0.553 3.447 9 O -0.598 6.598 10 N -0.607 5.607 11 C 0.107 3.893 12 C -0.120 4.120 13 C 0.229 3.771 14 O -0.593 6.593 15 C -0.557 4.557 16 H 0.065 0.935 17 C 0.035 3.965 18 N -0.908 5.908 19 Si 0.958 3.042 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.268 1.268 23 C 0.119 3.881 24 H 0.070 0.930 25 H 0.122 0.878 26 H 0.073 0.927 27 H 0.109 0.891 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.377 0.623 42 H 0.269 0.731 43 H 0.073 0.927 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.426 16.058 0.574 16.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C -0.076 4.076 4 C -0.040 4.040 5 C -0.215 4.215 6 C -0.196 4.196 7 C -0.215 4.215 8 C 0.346 3.654 9 O -0.482 6.482 10 N -0.337 5.337 11 C -0.016 4.016 12 C -0.159 4.159 13 C 0.189 3.811 14 O -0.401 6.401 15 C -0.595 4.595 16 H 0.083 0.917 17 C -0.167 4.167 18 N -0.547 5.547 19 Si 0.784 3.216 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.193 1.193 23 C -0.003 4.003 24 H 0.088 0.912 25 H 0.140 0.860 26 H 0.092 0.908 27 H 0.127 0.873 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.225 0.775 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.151 16.538 0.787 16.597 hybrid contribution -0.251 -1.624 -0.767 1.813 sum 0.900 14.915 0.020 14.942 Atomic orbital electron populations 1.22070 0.89906 1.05841 1.02726 1.21277 0.97502 0.91142 1.08765 1.23747 0.99650 0.93421 0.90757 1.19743 0.95693 0.91163 0.97370 1.22286 0.99909 1.03622 0.95679 1.21897 0.98426 0.97334 1.01959 1.22329 0.99544 1.03771 0.95888 1.18825 0.86546 0.84313 0.75728 1.90685 1.15269 1.88063 1.54213 1.48581 1.08689 1.05951 1.70513 1.22278 0.96893 0.82455 0.99951 1.23060 0.94984 0.98907 0.98956 1.19772 0.92147 0.88090 0.81090 1.86131 1.95366 1.26633 1.31925 1.21717 1.11628 0.94375 1.31781 0.91668 1.25645 0.98488 0.95638 0.96924 1.69853 1.40929 0.99466 1.44441 0.85564 0.79582 0.77259 0.79182 1.20234 1.21108 1.19273 1.22643 0.78617 0.97243 1.01801 0.91183 0.86028 0.90839 0.87264 0.92522 0.90064 0.91111 0.92637 0.90503 0.92569 0.90614 0.90231 0.93040 0.91730 0.92570 0.92730 0.90548 0.77459 0.92210 0.90933 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 5.39 71.24 0.38 -3.46 16 2 C -0.18 -5.65 5.76 -18.70 -0.11 -5.76 16 3 C -0.06 -1.46 8.08 24.52 0.20 -1.27 16 4 C -0.04 -0.73 0.75 -52.93 -0.04 -0.77 16 5 C -0.16 -2.59 8.03 71.98 0.58 -2.01 16 6 C -0.14 -2.13 8.39 71.98 0.60 -1.52 16 7 C -0.16 -2.63 8.04 71.98 0.58 -2.05 16 8 C 0.55 22.09 7.78 86.57 0.67 22.76 16 9 O -0.60 -27.24 16.53 -4.05 -0.07 -27.31 16 10 N -0.61 -24.90 3.33 -816.06 -2.71 -27.61 16 11 C 0.11 4.52 6.88 86.85 0.60 5.12 16 12 C -0.12 -5.47 5.27 31.99 0.17 -5.30 16 13 C 0.23 10.70 0.85 -10.35 -0.01 10.69 16 14 O -0.59 -29.09 13.07 -148.98 -1.95 -31.03 16 15 C -0.56 -27.68 8.22 25.60 0.21 -27.47 16 16 H 0.07 3.15 7.66 -2.91 -0.02 3.12 16 17 C 0.03 1.71 5.24 84.66 0.44 2.16 16 18 N -0.91 -46.09 10.69 21.45 0.23 -45.86 16 19 Si 0.96 39.77 29.54 68.60 2.03 41.80 16 20 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 23 C 0.12 4.79 4.51 86.73 0.39 5.18 16 24 H 0.07 1.91 5.59 -2.38 -0.01 1.90 16 25 H 0.12 2.38 2.58 -2.39 -0.01 2.38 16 26 H 0.07 1.94 6.19 -2.39 -0.01 1.92 16 27 H 0.11 3.18 7.43 -2.91 -0.02 3.16 16 28 H 0.06 0.94 8.10 -2.38 -0.02 0.92 16 29 H 0.08 0.99 8.10 -2.39 -0.02 0.97 16 30 H 0.07 1.28 4.81 -2.39 -0.01 1.27 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.08 1.31 4.64 -2.38 -0.01 1.30 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 2.66 8.10 -2.39 -0.02 2.64 16 38 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.05 2.56 8.04 -2.39 -0.02 2.54 16 40 H 0.08 3.65 7.37 -2.39 -0.02 3.63 16 41 H 0.38 18.72 7.84 -74.06 -0.58 18.14 16 42 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 43 H 0.07 2.84 6.15 -2.39 -0.01 2.83 16 44 H 0.09 3.57 5.28 -2.39 -0.01 3.56 16 Total: -1.00 -58.78 332.71 2.63 -56.15 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: 0.43 Total: 37.55 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 4.67 Total: -3.69 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -2.49 Total: -73.47 kcal Atomic # 8 Polarization: -56.33 SS G_CDS: -2.01 Total: -58.34 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -58.78 2.63 -56.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844018220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.269 kcal (2) G-P(sol) polarization free energy of solvation -58.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds