Wall clock time and date at job start Tue Mar 31 2020 07:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.32993 * 119.99692 * 2 1 4 4 C 1.50700 * 120.00253 * 352.42731 * 3 2 1 5 5 C 1.53005 * 109.46941 * 64.08784 * 4 3 2 6 6 C 1.52997 * 109.46983 * 184.08633 * 4 3 2 7 7 C 1.53003 * 109.47265 * 304.09220 * 4 3 2 8 8 C 1.47094 * 119.99899 * 180.02562 * 2 1 3 9 9 O 1.21612 * 120.00261 * 76.95869 * 8 2 1 10 10 N 1.34776 * 119.99900 * 256.95769 * 8 2 1 11 11 C 1.47430 * 125.64810 * 355.21386 * 10 8 2 12 12 C 1.54914 * 104.82991 * 155.83848 * 11 10 8 13 13 C 1.55152 * 101.58429 * 37.00731 * 12 11 10 14 14 O 1.42901 * 110.71920 * 82.86376 * 13 12 11 15 15 C 1.50699 * 110.72226 * 205.95733 * 13 12 11 16 16 H 1.07994 * 120.00348 * 116.15820 * 15 13 12 17 17 C 1.37880 * 119.99651 * 296.16301 * 15 13 12 18 18 N 1.31514 * 120.00387 * 359.97438 * 17 15 13 19 19 Si 1.86811 * 119.99725 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46792 * 59.99598 * 19 17 15 21 21 H 1.48491 * 109.46743 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46770 * 299.99829 * 19 17 15 23 23 C 1.47025 * 125.64952 * 175.17402 * 10 8 2 24 24 H 1.08997 * 109.46689 * 243.71806 * 1 2 3 25 25 H 1.09000 * 109.47347 * 3.71937 * 1 2 3 26 26 H 1.09003 * 109.46934 * 123.72198 * 1 2 3 27 27 H 1.08001 * 119.99505 * 172.42637 * 3 2 1 28 28 H 1.09003 * 109.46641 * 81.23844 * 5 4 3 29 29 H 1.08993 * 109.47102 * 201.23706 * 5 4 3 30 30 H 1.08993 * 109.47188 * 321.24226 * 5 4 3 31 31 H 1.09008 * 109.47040 * 60.00582 * 6 4 3 32 32 H 1.09003 * 109.46666 * 179.97438 * 6 4 3 33 33 H 1.08993 * 109.47574 * 299.99958 * 6 4 3 34 34 H 1.08998 * 109.46925 * 53.44311 * 7 4 3 35 35 H 1.08993 * 109.47161 * 173.44378 * 7 4 3 36 36 H 1.09003 * 109.46686 * 293.44704 * 7 4 3 37 37 H 1.08998 * 110.36381 * 36.99964 * 11 10 8 38 38 H 1.09001 * 110.36469 * 274.67417 * 11 10 8 39 39 H 1.09004 * 110.99950 * 278.93409 * 12 11 10 40 40 H 1.08999 * 111.03672 * 155.10235 * 12 11 10 41 41 H 0.96699 * 113.99952 * 61.44904 * 14 13 12 42 42 H 0.96995 * 120.00100 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.88542 * 61.67701 * 23 10 8 44 44 H 1.09005 * 109.88081 * 300.50905 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4283 2.4512 -0.1720 5 6 0.4851 2.6598 1.0145 6 6 2.4290 3.6067 -0.2373 7 6 0.6158 2.4062 -1.4677 8 6 2.2425 -1.2739 -0.0006 9 8 2.3408 -1.9189 -1.0269 10 7 2.8076 -1.7263 1.1363 11 6 2.8519 -1.0035 2.4205 12 6 3.0068 -2.1103 3.4933 13 6 3.9426 -3.1153 2.7712 14 8 5.3086 -2.7152 2.8985 15 6 3.7450 -4.5090 3.3092 16 1 3.3667 -5.2882 2.6643 17 6 4.0472 -4.7893 4.6250 18 7 4.5083 -3.8405 5.4104 19 14 3.8016 -6.5169 5.2921 20 1 4.6401 -7.4692 4.5206 21 1 4.1976 -6.5559 6.7227 22 1 2.3724 -6.8987 5.1630 23 6 3.4812 -3.0227 1.3015 24 1 -0.3632 -0.4550 0.9214 25 1 -0.3634 1.0255 -0.0667 26 1 -0.3633 -0.5705 -0.8548 27 1 3.2449 1.1558 0.1233 28 1 1.0460 3.0618 1.8582 29 1 -0.3016 3.3603 0.7344 30 1 0.0390 1.7061 1.2961 31 1 3.1010 3.4580 -1.0826 32 1 1.8911 4.5465 -0.3621 33 1 3.0078 3.6388 0.6857 34 1 -0.0139 1.5166 -1.4709 35 1 -0.0111 3.2953 -1.5344 36 1 1.2937 2.3746 -2.3207 37 1 1.9255 -0.4507 2.5768 38 1 3.7069 -0.3279 2.4463 39 1 2.0448 -2.5684 3.7237 40 1 3.4763 -1.7179 4.3954 41 1 5.6251 -2.6816 3.8116 42 1 4.7212 -4.0378 6.3359 43 1 4.3440 -3.0794 0.6378 44 1 2.7861 -3.8325 1.0795 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844018225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:56 Heat of formation + Delta-G solvation = -68.471378 kcal Electronic energy + Delta-G solvation = -23211.138199 eV Core-core repulsion = 19935.927758 eV Total energy + Delta-G solvation = -3275.210440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.85234 -38.37925 -37.10926 -34.30277 -32.75552 -32.20003 -29.67869 -28.54287 -28.10498 -27.36767 -26.52796 -25.32160 -23.12929 -21.50276 -19.68250 -19.04024 -17.92036 -17.20398 -16.36450 -15.60439 -15.24718 -14.96110 -14.65940 -14.28341 -14.27217 -14.15776 -13.62637 -13.50975 -12.99669 -12.59408 -12.27789 -12.09050 -12.02760 -12.00945 -11.77662 -11.62080 -11.53810 -11.37530 -11.35036 -11.16568 -10.95862 -10.88013 -10.62163 -10.51929 -10.45213 -10.12464 -9.46446 -9.27115 -8.87263 -8.67333 -8.23005 -8.01257 -6.30237 -4.37358 1.91480 3.03078 3.21293 3.25936 3.29459 3.60694 4.25985 4.57040 4.69199 4.86687 4.95748 5.02976 5.09025 5.29343 5.46006 5.47422 5.55613 5.57870 5.60594 5.69337 5.73130 5.78846 5.79081 5.84523 5.92701 5.97513 6.01715 6.08200 6.17162 6.21397 6.25110 6.44236 6.49563 6.68971 6.69618 6.90011 6.96702 7.27576 7.32461 7.72016 8.00826 8.10487 8.59971 8.65429 9.29920 9.40326 10.77703 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029860 B = 0.004112 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.469993 B = 6808.050306 C = 7031.229099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.144 4.144 3 C -0.113 4.113 4 C -0.037 4.037 5 C -0.156 4.156 6 C -0.140 4.140 7 C -0.156 4.156 8 C 0.562 3.438 9 O -0.552 6.552 10 N -0.603 5.603 11 C 0.099 3.901 12 C -0.136 4.136 13 C 0.248 3.752 14 O -0.585 6.585 15 C -0.535 4.535 16 H 0.064 0.936 17 C 0.074 3.926 18 N -0.897 5.897 19 Si 0.903 3.097 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.121 3.879 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.383 0.617 42 H 0.269 0.731 43 H 0.061 0.939 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 13.609 -5.136 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.147 4.147 3 C -0.132 4.132 4 C -0.037 4.037 5 C -0.213 4.213 6 C -0.197 4.197 7 C -0.213 4.213 8 C 0.350 3.650 9 O -0.431 6.431 10 N -0.334 5.334 11 C -0.024 4.024 12 C -0.175 4.175 13 C 0.208 3.792 14 O -0.395 6.395 15 C -0.574 4.574 16 H 0.082 0.918 17 C -0.129 4.129 18 N -0.537 5.537 19 Si 0.730 3.270 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.001 4.001 24 H 0.088 0.912 25 H 0.115 0.885 26 H 0.087 0.913 27 H 0.132 0.868 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.234 0.766 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.425 13.348 -6.201 16.485 hybrid contribution 0.087 -0.964 1.151 1.504 sum -7.338 12.384 -5.050 15.255 Atomic orbital electron populations 1.21368 0.90595 1.04160 1.02541 1.21324 0.96731 0.92825 1.03806 1.23215 0.99456 0.92364 0.98196 1.19566 0.95290 0.92782 0.96030 1.22294 0.98937 1.02759 0.97338 1.21906 0.98514 0.97211 1.02072 1.22316 1.00075 1.02613 0.96311 1.18159 0.78948 0.85403 0.82478 1.90769 1.61851 1.58858 1.31660 1.48710 1.54814 1.19751 1.10168 1.22467 1.00087 0.96109 0.83700 1.23318 1.01577 0.95508 0.97091 1.19443 0.79910 0.92168 0.87684 1.86124 1.28361 1.91180 1.33821 1.21490 1.44637 0.95187 0.96052 0.91813 1.24972 0.93707 0.97744 0.96474 1.69632 1.44278 1.32592 1.07171 0.86468 0.78806 0.83944 0.77734 1.19975 1.21091 1.20059 1.22096 0.95859 0.83394 0.98761 0.91197 0.88457 0.91292 0.86835 0.92307 0.92415 0.90823 0.92542 0.92526 0.92342 0.90686 0.92535 0.92496 0.92071 0.92079 0.91471 0.89500 0.76587 0.92117 0.92066 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 7.08 36.01 0.25 -1.32 16 2 C -0.14 -2.15 4.34 -102.85 -0.45 -2.60 16 3 C -0.11 -1.48 8.07 -36.13 -0.29 -1.77 16 4 C -0.04 -0.37 0.75 -155.66 -0.12 -0.48 16 5 C -0.16 -1.40 8.03 37.16 0.30 -1.10 16 6 C -0.14 -1.25 8.31 37.16 0.31 -0.94 16 7 C -0.16 -1.46 7.97 37.16 0.30 -1.17 16 8 C 0.56 11.07 7.23 -12.67 -0.09 10.98 16 9 O -0.55 -12.77 17.44 5.27 0.09 -12.68 16 10 N -0.60 -12.24 3.33 -171.90 -0.57 -12.81 16 11 C 0.10 1.82 6.60 -2.52 -0.02 1.80 16 12 C -0.14 -2.92 5.56 -24.58 -0.14 -3.06 16 13 C 0.25 6.00 0.85 -89.94 -0.08 5.93 16 14 O -0.59 -14.76 13.06 -35.23 -0.46 -15.22 16 15 C -0.54 -14.02 8.22 -34.44 -0.28 -14.30 16 16 H 0.06 1.67 7.56 -52.49 -0.40 1.28 16 17 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 18 N -0.90 -22.88 10.69 55.43 0.59 -22.29 16 19 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 C 0.12 2.78 6.23 -3.06 -0.02 2.76 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.10 0.94 2.93 -51.93 -0.15 0.79 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.11 1.57 7.99 -52.49 -0.42 1.16 16 28 H 0.06 0.52 7.95 -51.93 -0.41 0.11 16 29 H 0.06 0.43 7.86 -51.93 -0.41 0.02 16 30 H 0.07 0.69 5.01 -51.93 -0.26 0.43 16 31 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 34 H 0.07 0.73 4.73 -51.93 -0.25 0.48 16 35 H 0.06 0.43 7.99 -51.93 -0.41 0.02 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.97 7.61 -51.93 -0.40 0.57 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16 40 H 0.09 1.92 7.64 -51.93 -0.40 1.53 16 41 H 0.38 9.63 7.28 45.56 0.33 9.96 16 42 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 43 H 0.06 1.47 8.07 -51.93 -0.42 1.05 16 44 H 0.07 1.67 7.66 -51.93 -0.40 1.28 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -28.62 343.49 -7.10 -35.72 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.50 Total: 10.43 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -0.41 Total: -3.49 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.02 Total: -35.10 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.37 Total: -27.90 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.62 -7.10 -35.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844018225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.751 kcal (2) G-P(sol) polarization free energy of solvation -28.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds