Wall clock time and date at job start Tue Mar 31 2020 07:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32986 * 119.99815 * 2 1 4 4 C 1.50699 * 119.99928 * 188.09802 * 3 2 1 5 5 C 1.53004 * 109.47164 * 66.42741 * 4 3 2 6 6 C 1.53002 * 109.47321 * 186.42203 * 4 3 2 7 7 C 1.52994 * 109.47458 * 306.42892 * 4 3 2 8 8 C 1.47103 * 119.99877 * 179.97438 * 2 1 3 9 9 O 1.21621 * 119.99878 * 95.05073 * 8 2 1 10 10 N 1.34774 * 120.00305 * 275.04754 * 8 2 1 11 11 C 1.47020 * 125.64924 * 355.94516 * 10 8 2 12 12 C 1.54315 * 107.40356 * 178.82977 * 11 10 8 13 13 C 1.55403 * 102.82892 * 337.97803 * 12 11 10 14 14 O 1.42910 * 110.88834 * 277.26501 * 13 12 11 15 15 C 1.50693 * 111.07267 * 153.49118 * 13 12 11 16 16 H 1.07999 * 120.00262 * 247.66300 * 15 13 12 17 17 C 1.37884 * 120.00612 * 67.65940 * 15 13 12 18 18 N 1.31515 * 119.99279 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00467 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47014 * 59.99713 * 19 17 15 21 21 H 1.48502 * 109.47163 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47039 * 300.00234 * 19 17 15 23 23 C 1.47425 * 125.64871 * 175.90909 * 10 8 2 24 24 H 1.08999 * 109.47076 * 265.05919 * 1 2 3 25 25 H 1.08997 * 109.46992 * 25.06533 * 1 2 3 26 26 H 1.09001 * 109.46817 * 145.06572 * 1 2 3 27 27 H 1.08003 * 120.00525 * 8.10116 * 3 2 1 28 28 H 1.09000 * 109.47056 * 64.97515 * 5 4 3 29 29 H 1.09000 * 109.47250 * 184.97191 * 5 4 3 30 30 H 1.08997 * 109.46657 * 304.97767 * 5 4 3 31 31 H 1.09008 * 109.46557 * 60.00521 * 6 4 3 32 32 H 1.08995 * 109.47566 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47728 * 300.00891 * 6 4 3 34 34 H 1.09000 * 109.47500 * 74.38865 * 7 4 3 35 35 H 1.09002 * 109.47125 * 194.39671 * 7 4 3 36 36 H 1.09004 * 109.47016 * 314.38739 * 7 4 3 37 37 H 1.09004 * 109.87927 * 298.32610 * 11 10 8 38 38 H 1.08999 * 109.88385 * 59.33081 * 11 10 8 39 39 H 1.09005 * 110.72381 * 96.25056 * 12 11 10 40 40 H 1.09004 * 110.72189 * 219.52102 * 12 11 10 41 41 H 0.96689 * 114.00192 * 292.23650 * 14 13 12 42 42 H 0.96999 * 119.99949 * 179.97438 * 18 17 15 43 43 H 1.09004 * 110.36659 * 322.99604 * 23 10 8 44 44 H 1.08996 * 110.36992 * 85.21643 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6677 1.1582 -0.1838 5 6 4.0101 0.6781 -1.5957 6 6 4.1997 2.5790 0.0146 7 6 4.3118 0.2243 0.8426 8 6 2.2425 -1.2740 0.0006 9 8 2.6269 -1.7547 -1.0484 10 7 2.4906 -1.9084 1.1635 11 6 2.1597 -1.4019 2.5034 12 6 2.6000 -2.4730 3.5234 13 6 2.6431 -3.7686 2.6663 14 8 1.3404 -4.3439 2.5466 15 6 3.6194 -4.7641 3.2378 16 1 4.5221 -5.0069 2.6968 17 6 3.3606 -5.3649 4.4516 18 7 2.2613 -5.0696 5.1102 19 14 4.5713 -6.5983 5.1603 20 1 5.8882 -5.9413 5.3588 21 1 4.0644 -7.0964 6.4642 22 1 4.7236 -7.7383 4.2209 23 6 3.1379 -3.2257 1.3025 24 1 -0.3633 -0.0885 1.0238 25 1 -0.3633 0.9309 -0.4354 26 1 -0.3633 -0.8425 -0.5885 27 1 1.6401 2.0824 0.1318 28 1 3.6264 1.3915 -2.3251 29 1 5.0922 0.5985 -1.6999 30 1 3.5556 -0.2975 -1.7678 31 1 3.9558 2.9210 1.0205 32 1 5.2816 2.5837 -0.1179 33 1 3.7408 3.2444 -0.7166 34 1 4.1397 -0.8114 0.5498 35 1 5.3839 0.4164 0.8861 36 1 3.8707 0.4028 1.8233 37 1 2.6942 -0.4704 2.6900 38 1 1.0855 -1.2348 2.5818 39 1 3.5876 -2.2423 3.9229 40 1 1.8693 -2.5636 4.3272 41 1 0.9888 -4.6973 3.3752 42 1 2.0789 -5.4925 5.9639 43 1 2.8267 -3.8884 0.4950 44 1 4.2224 -3.1169 1.3066 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844018227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:00 Heat of formation + Delta-G solvation = -69.673837 kcal Electronic energy + Delta-G solvation = -23942.131306 eV Core-core repulsion = 20666.868723 eV Total energy + Delta-G solvation = -3275.262583 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.25938 -37.72014 -36.55900 -34.33252 -33.32079 -32.15649 -29.80245 -28.37865 -27.36524 -26.96405 -26.67388 -25.35268 -23.10985 -21.33379 -19.79897 -19.31711 -17.92141 -17.11842 -16.20140 -15.59927 -15.17090 -14.99588 -14.52473 -14.22685 -13.93254 -13.58503 -13.23520 -13.18104 -12.94662 -12.78159 -12.53818 -12.24778 -12.04894 -11.99426 -11.84863 -11.69593 -11.48733 -11.34698 -11.19801 -10.91612 -10.81817 -10.66255 -10.53628 -10.42894 -10.29486 -10.02697 -9.49964 -9.30623 -8.72858 -8.69320 -8.22402 -7.91424 -6.31945 -4.39663 1.93831 3.04025 3.20011 3.25129 3.28295 3.66774 4.24588 4.68051 4.86765 4.94019 5.02091 5.08647 5.34963 5.45680 5.54420 5.60889 5.65443 5.68893 5.73235 5.80900 5.87644 5.90003 5.93902 5.98849 6.07050 6.14685 6.16379 6.21773 6.33408 6.41932 6.48831 6.56559 6.61585 6.70152 6.79228 6.88857 7.00026 7.28127 7.30893 7.71478 7.97084 8.13385 8.60536 8.65123 9.29358 9.45966 10.75723 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026124 B = 0.004953 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.560120 B = 5652.281279 C = 5970.701425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.153 4.153 3 C -0.111 4.111 4 C -0.043 4.043 5 C -0.163 4.163 6 C -0.137 4.137 7 C -0.164 4.164 8 C 0.575 3.425 9 O -0.550 6.550 10 N -0.600 5.600 11 C 0.099 3.901 12 C -0.139 4.139 13 C 0.251 3.749 14 O -0.585 6.585 15 C -0.536 4.536 16 H 0.065 0.935 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.119 3.881 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.121 0.879 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.385 0.615 42 H 0.270 0.730 43 H 0.070 0.930 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 12.799 -4.541 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.156 4.156 3 C -0.130 4.130 4 C -0.043 4.043 5 C -0.220 4.220 6 C -0.194 4.194 7 C -0.221 4.221 8 C 0.365 3.635 9 O -0.430 6.430 10 N -0.331 5.331 11 C -0.024 4.024 12 C -0.177 4.177 13 C 0.210 3.790 14 O -0.395 6.395 15 C -0.574 4.574 16 H 0.083 0.917 17 C -0.129 4.129 18 N -0.538 5.538 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.002 4.002 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.138 0.862 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.237 0.763 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.391 12.708 -5.596 13.891 hybrid contribution 0.519 -0.636 1.239 1.486 sum 0.128 12.072 -4.357 12.835 Atomic orbital electron populations 1.20672 0.90155 1.02734 1.02577 1.21463 0.96674 0.93339 1.04134 1.23268 0.95292 0.96479 0.97949 1.19657 0.91823 0.96025 0.96785 1.22369 1.01376 1.04228 0.94037 1.21887 1.00827 0.95351 1.01331 1.22453 1.00164 1.00977 0.98479 1.17822 0.78685 0.84265 0.82728 1.90668 1.54096 1.67408 1.30864 1.48618 1.58300 1.20646 1.05552 1.22240 0.99449 0.97953 0.82724 1.23236 1.01501 0.95638 0.97370 1.19608 0.82516 0.89089 0.87805 1.86094 1.33802 1.80027 1.39574 1.21448 1.06566 1.24667 1.04733 0.91712 1.24982 0.95587 0.96192 0.96164 1.69552 1.25066 1.43351 1.15802 0.86461 0.81006 0.81282 0.78159 1.20035 1.21096 1.19973 1.22385 0.96128 0.82003 0.99698 0.91050 0.91374 0.91321 0.86154 0.93383 0.93155 0.88447 0.92712 0.92642 0.92798 0.90296 0.92756 0.92109 0.92448 0.92569 0.91434 0.89957 0.76250 0.92016 0.91159 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 10.04 36.01 0.36 -0.96 16 2 C -0.15 -2.31 4.70 -102.85 -0.48 -2.80 16 3 C -0.11 -1.45 8.12 -36.13 -0.29 -1.75 16 4 C -0.04 -0.57 0.75 -155.66 -0.12 -0.68 16 5 C -0.16 -2.34 8.27 37.16 0.31 -2.03 16 6 C -0.14 -1.45 8.37 37.16 0.31 -1.14 16 7 C -0.16 -2.43 7.07 37.15 0.26 -2.16 16 8 C 0.57 10.82 3.82 -12.67 -0.05 10.78 16 9 O -0.55 -11.86 14.36 5.26 0.08 -11.79 16 10 N -0.60 -11.63 1.97 -171.92 -0.34 -11.97 16 11 C 0.10 1.78 6.12 -3.07 -0.02 1.76 16 12 C -0.14 -2.91 5.66 -24.77 -0.14 -3.05 16 13 C 0.25 5.94 0.89 -89.49 -0.08 5.86 16 14 O -0.58 -14.82 13.18 -35.23 -0.46 -15.29 16 15 C -0.54 -13.71 8.26 -34.44 -0.28 -13.99 16 16 H 0.06 1.65 7.77 -52.49 -0.41 1.24 16 17 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 18 N -0.90 -22.77 10.79 55.43 0.60 -22.17 16 19 Si 0.90 19.92 29.54 -169.99 -5.02 14.89 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C 0.12 2.63 5.92 -2.53 -0.01 2.61 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.12 1.27 7.99 -52.48 -0.42 0.85 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 1.70 4.31 -51.93 -0.22 1.48 16 31 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.39 4.23 -51.93 -0.22 1.17 16 35 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 36 H 0.06 0.88 5.61 -51.93 -0.29 0.59 16 37 H 0.06 0.91 5.62 -51.93 -0.29 0.62 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 40 H 0.08 1.81 7.86 -51.93 -0.41 1.40 16 41 H 0.39 9.87 6.93 45.56 0.32 10.18 16 42 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 43 H 0.07 1.66 8.08 -51.93 -0.42 1.24 16 44 H 0.07 1.51 8.02 -51.93 -0.42 1.09 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -27.27 338.42 -6.93 -34.20 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -6.55 Total: 12.83 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -0.33 Total: -5.81 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.26 Total: -34.14 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.39 Total: -27.07 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.27 -6.93 -34.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844018227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.474 kcal (2) G-P(sol) polarization free energy of solvation -27.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds