Wall clock time and date at job start Tue Mar 31 2020 07:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50702 * 109.48244 * 2 1 4 4 O 1.21276 * 120.00285 * 258.75708 * 3 2 1 5 5 N 1.34780 * 119.99682 * 78.75469 * 3 2 1 6 6 C 1.46920 * 120.63236 * 354.27941 * 5 3 2 7 7 C 1.53196 * 108.89656 * 233.68382 * 6 5 3 8 8 C 1.53035 * 109.30963 * 305.29521 * 7 6 5 9 9 C 1.53039 * 109.53994 * 61.36121 * 8 7 6 10 10 H 1.09004 * 109.49746 * 58.62381 * 9 8 7 11 11 C 1.50706 * 109.49795 * 178.68029 * 9 8 7 12 12 H 1.08004 * 119.99613 * 120.00136 * 11 9 8 13 13 C 1.37875 * 120.00042 * 300.00304 * 11 9 8 14 14 N 1.31514 * 120.00155 * 0.02562 * 13 11 9 15 15 Si 1.86806 * 119.99715 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46729 * 90.00073 * 15 13 11 17 17 H 1.48499 * 109.46728 * 209.99949 * 15 13 11 18 18 H 1.48496 * 109.47153 * 330.00109 * 15 13 11 19 19 C 1.47207 * 120.81188 * 174.42753 * 5 3 2 20 20 C 1.53096 * 109.48145 * 239.97902 * 2 1 3 21 21 C 1.53182 * 109.16430 * 182.39792 * 20 2 1 22 22 C 1.53176 * 109.03847 * 56.97754 * 21 20 2 23 23 C 1.53098 * 109.16445 * 303.02282 * 22 21 20 24 24 O 1.42902 * 109.49041 * 120.02893 * 2 1 3 25 25 H 1.08998 * 109.47342 * 60.00118 * 1 2 3 26 26 H 1.09002 * 109.47461 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47548 * 299.99713 * 1 2 3 28 28 H 1.09002 * 109.58682 * 113.82223 * 6 5 3 29 29 H 1.09004 * 109.58781 * 353.54568 * 6 5 3 30 30 H 1.09004 * 109.49513 * 65.24187 * 7 6 5 31 31 H 1.08994 * 109.49953 * 185.31097 * 7 6 5 32 32 H 1.09001 * 109.46024 * 181.38644 * 8 7 6 33 33 H 1.09002 * 109.46129 * 301.35751 * 8 7 6 34 34 H 0.96998 * 119.99946 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.53358 * 6.53011 * 19 5 3 36 36 H 1.08996 * 109.67533 * 246.22437 * 19 5 3 37 37 H 1.09001 * 109.52379 * 302.30334 * 20 2 1 38 38 H 1.08999 * 109.52498 * 62.42694 * 20 2 1 39 39 H 1.08999 * 109.54159 * 176.84890 * 21 20 2 40 40 H 1.08998 * 109.54016 * 297.02094 * 21 20 2 41 41 H 1.09004 * 109.51827 * 62.92319 * 22 21 20 42 42 H 1.08994 * 109.52532 * 183.05273 * 22 21 20 43 43 H 1.08993 * 109.47936 * 177.58705 * 23 22 21 44 44 H 1.08997 * 109.47618 * 297.62727 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 8 2.4278 1.9242 -1.0301 5 7 2.0427 2.1319 1.1449 6 6 1.4528 1.5820 2.3730 7 6 0.4351 2.5843 2.9265 8 6 1.1131 3.9436 3.1123 9 6 1.6099 4.4571 1.7590 10 1 0.7690 4.5401 1.0704 11 6 2.2486 5.8104 1.9381 12 1 3.2850 5.9578 1.6721 13 6 1.5100 6.8601 2.4415 14 7 0.2482 6.6804 2.7658 15 14 2.3020 8.5373 2.6641 16 1 2.1285 9.3350 1.4237 17 1 1.6566 9.2424 3.8005 18 1 3.7502 8.3674 2.9450 19 6 2.6410 3.4761 1.1923 20 6 2.0405 -0.7221 -1.2497 21 6 3.5711 -0.7705 -1.2124 22 6 4.0179 -1.4597 0.0805 23 6 3.4309 -0.7091 1.2789 24 8 2.0067 -0.6742 1.1663 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.2370 1.4123 3.1108 29 1 0.9528 0.6399 2.1481 30 1 -0.3947 2.6843 2.2267 31 1 0.0605 2.2298 3.8867 32 1 0.3976 4.6524 3.5293 33 1 1.9581 3.8380 3.7928 34 1 -0.2713 7.4189 3.1203 35 1 2.9243 3.7846 0.1860 36 1 3.5231 3.4628 1.8324 37 1 1.6444 -1.7374 -1.2711 38 1 1.7137 -0.1848 -2.1400 39 1 3.9391 -1.3322 -2.0710 40 1 3.9687 0.2439 -1.2427 41 1 3.6616 -2.4898 0.0860 42 1 5.1061 -1.4502 0.1411 43 1 3.7103 -1.2201 2.2001 44 1 3.8192 0.3093 1.2955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855253478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:46 Heat of formation + Delta-G solvation = -93.133636 kcal Electronic energy + Delta-G solvation = -24269.162566 eV Core-core repulsion = 20992.882690 eV Total energy + Delta-G solvation = -3276.279876 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.90424 -38.12391 -36.73371 -33.95154 -33.19310 -32.85908 -31.25554 -30.10021 -27.81793 -25.31360 -25.01392 -24.25207 -22.54604 -21.69715 -21.10206 -19.44481 -18.06710 -17.34278 -16.32245 -16.13588 -15.51109 -14.99632 -14.76653 -14.46688 -14.20910 -14.02573 -13.59317 -13.46667 -12.89569 -12.77417 -12.68860 -12.46769 -12.32077 -12.02790 -11.86790 -11.80631 -11.77532 -11.08098 -10.97942 -10.82559 -10.77515 -10.70823 -10.53612 -10.25079 -9.96397 -9.77650 -9.70092 -9.42944 -8.96962 -8.69081 -8.37778 -7.85686 -6.01343 -4.08674 2.92439 3.29903 3.36356 3.38763 3.46375 3.72698 4.42549 4.58002 4.77129 4.80152 4.86812 4.92344 5.20979 5.28232 5.44144 5.47095 5.58439 5.62047 5.65044 5.75863 5.77120 5.83338 5.86412 5.96742 5.97890 6.06344 6.15026 6.22103 6.32321 6.37812 6.42808 6.53759 6.67345 6.84352 6.95486 7.08744 7.20772 7.36487 7.69726 7.92990 8.03720 8.08955 8.37810 8.61540 8.94829 9.56143 11.03989 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029423 B = 0.004865 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.393200 B = 5753.883329 C = 6005.600260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.102 3.898 3 C 0.492 3.508 4 O -0.546 6.546 5 N -0.592 5.592 6 C 0.102 3.898 7 C -0.137 4.137 8 C -0.112 4.112 9 C 0.042 3.958 10 H 0.029 0.971 11 C -0.514 4.514 12 H 0.056 0.944 13 C 0.064 3.936 14 N -0.889 5.889 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.115 3.885 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.154 4.154 23 C 0.053 3.947 24 O -0.362 6.362 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.034 0.966 34 H 0.260 0.740 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 -16.813 -2.139 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.060 3.940 3 C 0.278 3.722 4 O -0.425 6.425 5 N -0.324 5.324 6 C -0.021 4.021 7 C -0.175 4.175 8 C -0.150 4.150 9 C 0.023 3.977 10 H 0.047 0.953 11 C -0.553 4.553 12 H 0.074 0.926 13 C -0.138 4.138 14 N -0.527 5.527 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.006 4.006 20 C -0.162 4.162 21 C -0.165 4.165 22 C -0.191 4.191 23 C -0.023 4.023 24 O -0.281 6.281 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.253 -16.516 -2.454 16.849 hybrid contribution 0.576 1.112 0.123 1.259 sum 2.829 -15.404 -2.332 15.834 Atomic orbital electron populations 1.21895 0.90685 1.03477 1.03878 1.21735 0.96279 0.88798 0.87229 1.21016 0.79133 0.88294 0.83748 1.90644 1.48608 1.71740 1.31527 1.48398 1.56676 1.17913 1.09399 1.22071 0.96569 0.97504 0.85947 1.22038 0.98006 0.97861 0.99586 1.21620 0.99998 0.93578 0.99790 1.18946 0.93710 0.91984 0.93111 0.95331 1.21076 0.97441 0.94012 1.42739 0.92574 1.24930 0.94801 0.98765 0.95268 1.69875 1.07367 1.31660 1.43827 0.86587 0.79488 0.84170 0.77714 1.20674 1.21240 1.19912 1.22054 0.96773 0.80061 1.01737 1.21921 0.96415 1.00440 0.97470 1.21657 0.95587 1.02091 0.97201 1.22175 1.00948 1.00214 0.95809 1.22660 0.80951 1.00295 0.98399 1.87966 1.21328 1.76927 1.41902 0.90458 0.90798 0.90675 0.92501 0.88587 0.92576 0.92528 0.88728 0.94700 0.92989 0.90536 0.92789 0.90796 0.89905 0.91597 0.90504 0.91223 0.91060 0.88600 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.55 37.15 0.32 -1.46 16 2 C 0.10 1.45 0.67 -91.73 -0.06 1.39 16 3 C 0.49 8.94 4.71 -10.98 -0.05 8.89 16 4 O -0.55 -11.59 14.16 5.56 0.08 -11.51 16 5 N -0.59 -11.16 2.55 -172.54 -0.44 -11.60 16 6 C 0.10 1.68 4.78 -3.71 -0.02 1.66 16 7 C -0.14 -2.51 6.08 -26.61 -0.16 -2.67 16 8 C -0.11 -2.54 4.96 -26.69 -0.13 -2.68 16 9 C 0.04 1.03 2.25 -91.65 -0.21 0.83 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.51 -14.01 8.56 -34.44 -0.29 -14.30 16 12 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 13 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 14 N -0.89 -25.06 11.31 55.43 0.63 -24.43 16 15 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.11 2.51 5.67 -3.56 -0.02 2.49 16 20 C -0.12 -1.57 4.56 -26.59 -0.12 -1.69 16 21 C -0.13 -1.58 5.74 -26.55 -0.15 -1.73 16 22 C -0.15 -1.64 6.14 -26.59 -0.16 -1.80 16 23 C 0.05 0.65 6.21 37.21 0.23 0.88 16 24 O -0.36 -4.83 7.51 -35.23 -0.26 -5.10 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.98 6.32 -51.93 -0.33 0.65 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 1.42 3.63 -51.93 -0.19 1.23 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.08 1.80 7.02 -51.93 -0.36 1.43 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.11 7.82 -51.93 -0.41 0.70 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.16 6.48 -51.93 -0.34 0.83 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.79 6.75 -51.93 -0.35 0.44 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -29.57 326.54 -8.35 -37.92 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.33 Total: 2.18 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.93 Total: -8.55 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.19 Total: -36.03 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.19 Total: -16.61 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.57 -8.35 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855253478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.209 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds