Wall clock time and date at job start Tue Mar 31 2020 07:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.48304 * 2 1 4 4 O 1.21280 * 120.00312 * 107.14035 * 3 2 1 5 5 N 1.34781 * 119.99726 * 287.14180 * 3 2 1 6 6 C 1.46925 * 120.63172 * 356.43529 * 5 3 2 7 7 C 1.53189 * 108.77649 * 126.11526 * 6 5 3 8 8 C 1.53035 * 109.31366 * 54.63540 * 7 6 5 9 9 C 1.53036 * 109.53971 * 298.63340 * 8 7 6 10 10 H 1.09010 * 109.49925 * 301.41718 * 9 8 7 11 11 C 1.50699 * 109.50003 * 181.31916 * 9 8 7 12 12 H 1.08001 * 119.99819 * 240.00408 * 11 9 8 13 13 C 1.37872 * 120.00106 * 59.99889 * 11 9 8 14 14 N 1.31516 * 120.00140 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00120 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47171 * 89.99477 * 15 13 11 17 17 H 1.48498 * 109.47105 * 210.00257 * 15 13 11 18 18 H 1.48503 * 109.46983 * 330.00106 * 15 13 11 19 19 C 1.46924 * 120.62865 * 176.15054 * 5 3 2 20 20 C 1.53092 * 109.48196 * 120.01843 * 2 1 3 21 21 C 1.53206 * 109.15233 * 177.59220 * 20 2 1 22 22 C 1.53173 * 109.04171 * 303.02672 * 21 20 2 23 23 C 1.53093 * 109.16287 * 56.98074 * 22 21 20 24 24 O 1.42900 * 109.41486 * 302.38950 * 23 22 21 25 25 H 1.09004 * 109.46706 * 60.00111 * 1 2 3 26 26 H 1.08990 * 109.47295 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47301 * 300.00637 * 1 2 3 28 28 H 1.09005 * 109.58759 * 245.90364 * 6 5 3 29 29 H 1.09006 * 109.58618 * 6.18139 * 6 5 3 30 30 H 1.09004 * 109.49802 * 174.59153 * 7 6 5 31 31 H 1.09000 * 109.49802 * 294.68257 * 7 6 5 32 32 H 1.09004 * 109.46097 * 58.65803 * 8 7 6 33 33 H 1.09003 * 109.45817 * 178.63056 * 8 7 6 34 34 H 0.96998 * 119.99945 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.58895 * 353.67256 * 19 5 3 36 36 H 1.09001 * 109.58395 * 114.09871 * 19 5 3 37 37 H 1.08999 * 109.52245 * 297.51109 * 20 2 1 38 38 H 1.09004 * 109.51952 * 57.69907 * 20 2 1 39 39 H 1.09005 * 109.53455 * 183.15971 * 21 20 2 40 40 H 1.08998 * 109.60949 * 62.94296 * 21 20 2 41 41 H 1.09001 * 109.52562 * 297.07771 * 22 21 20 42 42 H 1.09000 * 109.52078 * 176.88779 * 22 21 20 43 43 H 1.08999 * 109.48050 * 182.40319 * 23 22 21 44 44 H 1.09000 * 109.48583 * 62.37994 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 8 2.5266 1.8892 1.0036 5 7 1.9330 2.1707 -1.1154 6 6 1.4087 1.5941 -2.3609 7 6 0.2554 2.4689 -2.8621 8 6 0.7373 3.9154 -2.9934 9 6 1.1770 4.4348 -1.6226 10 1 0.3422 4.3709 -0.9244 11 6 1.6209 5.8695 -1.7470 12 1 2.6306 6.1472 -1.4827 13 6 0.7381 6.8276 -2.1982 14 7 -0.4916 6.4896 -2.5196 15 14 1.2886 8.6060 -2.3530 16 1 1.8451 8.8355 -3.7105 17 1 0.1264 9.5046 -2.1359 18 1 2.3319 8.8916 -1.3356 19 6 2.3408 3.5822 -1.1072 20 6 2.0405 -0.7220 1.2497 21 6 3.5713 -0.7705 1.2120 22 6 4.0178 -1.4597 -0.0810 23 6 3.4307 -0.7090 -1.2792 24 8 2.0066 -0.6742 -1.1664 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.1988 1.5658 -3.1114 29 1 1.0479 0.5830 -2.1720 30 1 -0.0796 2.1073 -3.8344 31 1 -0.5707 2.4236 -2.1524 32 1 1.5793 3.9564 -3.6844 33 1 -0.0747 4.5357 -3.3730 34 1 -1.1125 7.1636 -2.8374 35 1 2.5926 3.8840 -0.0906 36 1 3.2068 3.7161 -1.7555 37 1 1.7146 -0.1841 2.1399 38 1 1.6444 -1.7373 1.2711 39 1 3.9395 -1.3323 2.0705 40 1 3.9703 0.2434 1.2414 41 1 3.6617 -2.4898 -0.0865 42 1 5.1061 -1.4492 -0.1423 43 1 3.7100 -1.2199 -2.2006 44 1 3.8191 0.3093 -1.2961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855253480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:04 Heat of formation + Delta-G solvation = -92.527806 kcal Electronic energy + Delta-G solvation = -24268.625655 eV Core-core repulsion = 20992.372050 eV Total energy + Delta-G solvation = -3276.253605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92163 -38.14607 -36.73779 -33.96158 -33.20334 -32.84170 -31.25603 -30.10363 -27.80087 -25.31358 -25.01508 -24.24236 -22.55257 -21.69765 -21.10294 -19.43001 -18.08489 -17.35030 -16.35606 -16.14258 -15.49219 -15.02881 -14.75191 -14.46655 -14.19504 -14.06303 -13.57341 -13.48010 -12.85181 -12.78732 -12.68599 -12.49664 -12.29976 -12.00864 -11.85688 -11.81065 -11.75149 -11.04702 -10.97618 -10.82779 -10.76845 -10.70877 -10.55920 -10.23588 -9.96804 -9.80772 -9.68384 -9.43421 -8.95282 -8.68165 -8.37455 -7.86304 -6.01755 -4.09060 2.90276 3.29323 3.36157 3.39493 3.48498 3.72131 4.42374 4.58900 4.78047 4.80244 4.87661 4.92259 5.21311 5.27833 5.43955 5.48560 5.59741 5.63713 5.66380 5.75308 5.78556 5.83638 5.87493 5.98099 5.99988 6.06915 6.16977 6.22825 6.35244 6.38580 6.43081 6.54516 6.68039 6.85089 6.95526 7.07925 7.20538 7.36129 7.69382 7.92234 8.03520 8.08499 8.37487 8.61644 8.94472 9.55818 11.03565 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030392 B = 0.004828 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.070652 B = 5798.223681 C = 6048.165118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.103 3.897 3 C 0.491 3.509 4 O -0.547 6.547 5 N -0.590 5.590 6 C 0.094 3.906 7 C -0.136 4.136 8 C -0.112 4.112 9 C 0.042 3.958 10 H 0.028 0.972 11 C -0.514 4.514 12 H 0.056 0.944 13 C 0.064 3.936 14 N -0.889 5.889 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.114 3.886 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.153 4.153 23 C 0.054 3.946 24 O -0.362 6.362 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.260 0.740 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 -16.451 1.667 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.060 3.940 3 C 0.277 3.723 4 O -0.426 6.426 5 N -0.322 5.322 6 C -0.028 4.028 7 C -0.174 4.174 8 C -0.150 4.150 9 C 0.022 3.978 10 H 0.046 0.954 11 C -0.553 4.553 12 H 0.074 0.926 13 C -0.138 4.138 14 N -0.527 5.527 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.007 4.007 20 C -0.162 4.162 21 C -0.167 4.167 22 C -0.191 4.191 23 C -0.023 4.023 24 O -0.281 6.281 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.710 -16.188 1.981 16.725 hybrid contribution 0.428 1.171 -0.108 1.251 sum 4.138 -15.017 1.873 15.689 Atomic orbital electron populations 1.21904 0.90646 1.03455 1.04023 1.21760 0.96293 0.88745 0.87182 1.21009 0.79497 0.88289 0.83469 1.90634 1.45294 1.73738 1.32936 1.48338 1.61374 1.12300 1.10143 1.22202 0.96707 0.98418 0.85476 1.22035 0.97177 0.98489 0.99736 1.21625 1.01561 0.92196 0.99645 1.18957 0.92600 0.92951 0.93245 0.95361 1.21075 0.98040 0.92057 1.44091 0.92560 1.24928 0.94826 0.98815 0.95190 1.69875 1.04569 1.33585 1.44712 0.86587 0.78226 0.84742 0.78415 1.20689 1.21231 1.19885 1.22020 0.98921 0.77891 1.01844 1.21915 0.96471 1.00378 0.97421 1.21691 0.95574 1.02325 0.97061 1.22171 1.00914 1.00195 0.95833 1.22650 0.80931 1.00208 0.98480 1.87943 1.21350 1.76987 1.41802 0.90535 0.90828 0.90499 0.92522 0.87922 0.92566 0.92534 0.94711 0.88729 0.92988 0.90508 0.92837 0.89998 0.90848 0.91694 0.90123 0.91239 0.91079 0.88577 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.56 37.15 0.32 -1.51 16 2 C 0.10 1.46 0.67 -91.73 -0.06 1.40 16 3 C 0.49 8.92 4.74 -10.98 -0.05 8.87 16 4 O -0.55 -11.51 13.81 5.56 0.08 -11.43 16 5 N -0.59 -11.13 2.85 -172.76 -0.49 -11.62 16 6 C 0.09 1.56 4.86 -3.71 -0.02 1.54 16 7 C -0.14 -2.49 6.00 -26.62 -0.16 -2.65 16 8 C -0.11 -2.55 4.96 -26.69 -0.13 -2.68 16 9 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 10 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 11 C -0.51 -13.99 8.56 -34.44 -0.29 -14.28 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 14 N -0.89 -24.99 11.31 55.43 0.63 -24.36 16 15 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 19 C 0.11 2.51 5.65 -3.71 -0.02 2.49 16 20 C -0.12 -1.58 4.55 -26.58 -0.12 -1.70 16 21 C -0.13 -1.60 5.73 -26.54 -0.15 -1.75 16 22 C -0.15 -1.64 6.14 -26.59 -0.16 -1.80 16 23 C 0.05 0.65 6.30 37.21 0.23 0.88 16 24 O -0.36 -4.83 7.40 -35.23 -0.26 -5.09 16 25 H 0.08 1.03 5.93 -51.93 -0.31 0.73 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 1.52 3.63 -51.93 -0.19 1.33 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.07 7.78 -51.93 -0.40 0.66 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.09 2.43 6.04 -51.93 -0.31 2.11 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.08 1.81 7.02 -51.93 -0.36 1.44 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.10 7.88 -51.93 -0.41 0.69 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.23 6.26 -51.93 -0.33 0.90 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.76 6.99 -51.93 -0.36 0.40 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -29.40 325.79 -8.38 -37.78 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.29 Total: 2.39 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -0.92 Total: -8.72 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.13 Total: -35.98 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.18 Total: -16.52 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.40 -8.38 -37.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855253480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.748 kcal (2) G-P(sol) polarization free energy of solvation -29.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds