Wall clock time and date at job start Tue Mar 31 2020 07:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47972 * 2 1 4 4 O 1.21278 * 120.00132 * 260.12797 * 3 2 1 5 5 N 1.34778 * 119.99746 * 80.13159 * 3 2 1 6 6 C 1.46929 * 120.62769 * 175.15991 * 5 3 2 7 7 C 1.53189 * 108.77595 * 126.43073 * 6 5 3 8 8 C 1.53038 * 109.31277 * 54.63784 * 7 6 5 9 9 C 1.53047 * 109.53692 * 298.63045 * 8 7 6 10 10 H 1.09007 * 109.49620 * 301.38424 * 9 8 7 11 11 C 1.50692 * 109.49837 * 181.31986 * 9 8 7 12 12 H 1.08002 * 119.99984 * 272.73054 * 11 9 8 13 13 C 1.37876 * 120.00288 * 92.73616 * 11 9 8 14 14 N 1.31513 * 119.99545 * 351.95069 * 13 11 9 15 15 Si 1.86801 * 120.00195 * 171.94328 * 13 11 9 16 16 H 1.48504 * 109.46626 * 60.00255 * 15 13 11 17 17 H 1.48496 * 109.47406 * 300.00579 * 15 13 11 18 18 H 1.48499 * 109.47329 * 180.02562 * 15 13 11 19 19 C 1.46924 * 120.60860 * 355.17548 * 5 3 2 20 20 C 1.53090 * 109.48038 * 239.97703 * 2 1 3 21 21 C 1.53208 * 109.14824 * 182.41022 * 20 2 1 22 22 C 1.53169 * 109.04184 * 56.97068 * 21 20 2 23 23 C 1.53085 * 109.16905 * 303.01969 * 22 21 20 24 24 O 1.42903 * 109.47945 * 120.02427 * 2 1 3 25 25 H 1.08998 * 109.47245 * 60.00174 * 1 2 3 26 26 H 1.09007 * 109.47470 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47390 * 300.00298 * 1 2 3 28 28 H 1.09002 * 109.58910 * 6.64298 * 6 5 3 29 29 H 1.09003 * 109.58247 * 246.21935 * 6 5 3 30 30 H 1.09000 * 109.49793 * 294.68133 * 7 6 5 31 31 H 1.09005 * 109.49537 * 174.58048 * 7 6 5 32 32 H 1.09002 * 109.45936 * 178.61416 * 8 7 6 33 33 H 1.09000 * 109.46371 * 58.65190 * 8 7 6 34 34 H 0.96992 * 120.00626 * 4.33133 * 14 13 11 35 35 H 1.09007 * 109.56415 * 113.76476 * 19 5 3 36 36 H 1.09006 * 109.61686 * 353.33993 * 19 5 3 37 37 H 1.09000 * 109.52464 * 302.30149 * 20 2 1 38 38 H 1.08996 * 109.52136 * 62.49465 * 20 2 1 39 39 H 1.08998 * 109.53664 * 297.10115 * 21 20 2 40 40 H 1.09002 * 109.53484 * 176.84335 * 21 20 2 41 41 H 1.09004 * 109.52227 * 183.10980 * 22 21 20 42 42 H 1.09007 * 109.57443 * 62.95949 * 22 21 20 43 43 H 1.09000 * 109.48210 * 297.62982 * 23 22 21 44 44 H 1.08996 * 109.48755 * 177.59224 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 8 2.4045 1.9324 -1.0347 5 7 2.0686 2.1227 1.1500 6 6 2.6534 3.4701 1.1864 7 6 1.6299 4.4356 1.7922 8 6 1.1823 3.9076 3.1571 9 6 0.5140 2.5418 2.9835 10 1 -0.3390 2.6369 2.3115 11 6 0.0446 2.0375 4.3237 12 1 0.7164 1.4737 4.9540 13 6 -1.2425 2.2956 4.7453 14 7 -2.0090 3.1118 4.0556 15 14 -1.8975 1.4859 6.2961 16 1 -1.0550 1.8798 7.4538 17 1 -1.8613 0.0099 6.1370 18 1 -3.2970 1.9239 6.5299 19 6 1.5242 1.5545 2.3907 20 6 2.0405 -0.7221 -1.2496 21 6 3.5714 -0.7706 -1.2118 22 6 4.0178 -1.4596 0.0812 23 6 3.4307 -0.7090 1.2793 24 8 2.0065 -0.6741 1.1665 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.9012 3.7885 0.1738 29 1 3.5546 3.4609 1.7996 30 1 0.7668 4.5128 1.1310 31 1 2.0848 5.4187 1.9139 32 1 0.4724 4.6054 3.6014 33 1 2.0494 3.8073 3.8099 34 1 -1.6919 3.4829 3.2174 35 1 2.3334 1.3885 3.1020 36 1 1.0268 0.6093 2.1729 37 1 1.6445 -1.7374 -1.2710 38 1 1.7147 -0.1842 -2.1398 39 1 3.9690 0.2439 -1.2405 40 1 3.9395 -1.3324 -2.0703 41 1 5.1060 -1.4492 0.1426 42 1 3.6625 -2.4902 0.0874 43 1 3.8190 0.3094 1.2961 44 1 3.7099 -1.2198 2.2008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855253481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:20 Heat of formation + Delta-G solvation = -97.828687 kcal Electronic energy + Delta-G solvation = -24562.246929 eV Core-core repulsion = 21285.763460 eV Total energy + Delta-G solvation = -3276.483469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.46 seconds Orbital eigenvalues (eV) -40.91410 -38.20413 -36.89605 -33.86764 -33.34414 -32.86069 -31.57050 -29.89682 -27.71397 -25.38075 -24.53535 -24.19531 -22.80072 -21.86767 -20.95438 -19.75658 -18.14419 -17.39596 -16.62422 -16.14124 -15.66965 -14.98580 -14.59438 -14.27317 -14.11007 -13.95394 -13.80606 -13.70655 -13.04389 -12.80935 -12.68375 -12.49388 -12.21163 -12.01894 -11.86772 -11.75396 -11.66495 -11.39773 -11.00263 -10.82921 -10.77596 -10.49798 -10.39556 -10.31143 -10.12269 -9.94439 -9.70663 -9.62260 -8.79815 -8.63322 -8.26732 -7.98278 -6.40618 -4.10314 2.85691 3.38516 3.43502 3.44125 3.62304 3.80796 4.49550 4.64679 4.82082 4.83434 4.91062 4.97279 5.28874 5.29873 5.47890 5.51646 5.56909 5.58303 5.71352 5.74409 5.78279 5.85644 5.88406 5.95049 5.99078 6.02141 6.10012 6.13473 6.24435 6.31378 6.34904 6.36900 6.52618 6.69984 6.80279 6.89797 7.05619 7.22352 7.39456 7.51984 7.89435 8.18132 8.39956 8.51367 8.83503 9.61784 10.99181 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.006214 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.874160 B = 4505.203653 C = 5118.575568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.105 3.895 3 C 0.496 3.504 4 O -0.557 6.557 5 N -0.595 5.595 6 C 0.112 3.888 7 C -0.135 4.135 8 C -0.109 4.109 9 C 0.020 3.980 10 H 0.036 0.964 11 C -0.593 4.593 12 H 0.050 0.950 13 C 0.023 3.977 14 N -0.909 5.909 15 Si 1.065 2.935 16 H -0.289 1.289 17 H -0.287 1.287 18 H -0.283 1.283 19 C 0.108 3.892 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.155 4.155 23 C 0.054 3.946 24 O -0.354 6.354 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.270 0.730 35 H 0.051 0.949 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.439 -6.804 -7.387 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.063 3.937 3 C 0.283 3.717 4 O -0.437 6.437 5 N -0.326 5.326 6 C -0.011 4.011 7 C -0.174 4.174 8 C -0.147 4.147 9 C 0.000 4.000 10 H 0.054 0.946 11 C -0.632 4.632 12 H 0.069 0.931 13 C -0.182 4.182 14 N -0.544 5.544 15 Si 0.894 3.106 16 H -0.215 1.215 17 H -0.213 1.213 18 H -0.209 1.209 19 C -0.013 4.013 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.192 4.192 23 C -0.023 4.023 24 O -0.273 6.273 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.188 -6.676 -6.761 12.543 hybrid contribution 1.624 0.312 -1.015 1.940 sum 9.812 -6.364 -7.775 14.044 Atomic orbital electron populations 1.21903 0.90333 1.03854 1.04088 1.21675 0.96574 0.88231 0.87244 1.21146 0.78348 0.88728 0.83487 1.90606 1.49847 1.71558 1.31716 1.48469 1.57953 1.16108 1.10092 1.21549 0.95680 0.82471 1.01390 1.21994 0.98569 0.97388 0.99406 1.21773 0.99658 0.99951 0.93354 1.19229 0.93305 0.90505 0.96933 0.94586 1.21788 0.99775 1.38699 1.02918 0.93150 1.25794 0.93760 0.94933 1.03664 1.70808 1.41008 1.27464 1.15163 0.83591 0.76278 0.75928 0.74831 1.21509 1.21297 1.20875 1.22547 0.97000 0.99225 0.82542 1.21946 0.96264 1.00675 0.97413 1.21647 0.95674 1.01746 0.97283 1.22193 1.00812 1.00436 0.95788 1.22651 0.81271 0.99958 0.98435 1.88080 1.20971 1.76745 1.41485 0.90805 0.90646 0.89926 0.90169 0.92303 0.92359 0.92333 0.92625 0.93641 0.91830 0.93088 0.87728 0.90600 0.90008 0.90874 0.91614 0.91169 0.91068 0.93004 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.57 37.16 0.32 -1.92 16 2 C 0.11 1.67 0.67 -91.73 -0.06 1.61 16 3 C 0.50 9.04 4.71 -10.98 -0.05 8.99 16 4 O -0.56 -11.12 14.23 5.56 0.08 -11.04 16 5 N -0.59 -11.10 2.49 -172.76 -0.43 -11.53 16 6 C 0.11 1.96 6.44 -3.71 -0.02 1.93 16 7 C -0.14 -2.48 6.08 -26.61 -0.16 -2.64 16 8 C -0.11 -2.35 5.15 -26.69 -0.14 -2.49 16 9 C 0.02 0.46 2.00 -91.65 -0.18 0.28 16 10 H 0.04 0.93 6.65 -51.93 -0.35 0.59 16 11 C -0.59 -15.64 8.31 -34.44 -0.29 -15.92 16 12 H 0.05 1.33 7.83 -52.49 -0.41 0.92 16 13 C 0.02 0.64 5.44 -17.82 -0.10 0.54 16 14 N -0.91 -26.38 13.62 55.43 0.75 -25.63 16 15 Si 1.07 24.30 29.91 -169.99 -5.08 19.22 16 16 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.11 2.18 3.91 -3.71 -0.01 2.16 16 20 C -0.12 -1.69 4.57 -26.58 -0.12 -1.81 16 21 C -0.13 -1.59 5.74 -26.54 -0.15 -1.75 16 22 C -0.15 -1.78 6.13 -26.60 -0.16 -1.94 16 23 C 0.05 0.73 6.10 37.20 0.23 0.96 16 24 O -0.35 -5.66 7.40 -35.23 -0.26 -5.92 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.08 1.49 6.54 -51.93 -0.34 1.15 16 28 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.27 7.83 6.68 -40.82 -0.27 7.56 16 35 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 36 H 0.10 2.14 3.68 -51.93 -0.19 1.95 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 1.13 7.81 -51.93 -0.41 0.73 16 39 H 0.07 1.08 6.53 -51.93 -0.34 0.74 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.05 0.78 6.61 -51.93 -0.34 0.43 16 44 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 327.96 15.07 4.94 4.94 Total: -1.00 -29.40 327.96 -8.21 -37.61 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.30 Total: 4.33 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -0.91 Total: -11.99 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.32 Total: -37.16 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.18 Total: -16.96 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.08 Total: 19.22 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.40 -8.21 -37.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855253481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.214 kcal (2) G-P(sol) polarization free energy of solvation -29.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.46 seconds