Wall clock time and date at job start Tue Mar 31 2020 06:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 112.84549 * 2 1 4 4 C 1.42898 * 114.00186 * 50.33139 * 3 2 1 5 5 C 1.50703 * 109.47171 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 3 8 8 C 1.46926 * 120.62694 * 359.97438 * 7 5 4 9 9 C 1.53197 * 108.77484 * 126.37299 * 8 7 5 10 10 C 1.53038 * 109.30963 * 54.63204 * 9 8 7 11 11 C 1.53037 * 109.53983 * 298.63302 * 10 9 8 12 12 H 1.08998 * 109.50110 * 301.38515 * 11 10 9 13 13 C 1.50702 * 109.49537 * 181.31732 * 11 10 9 14 14 H 1.08001 * 120.00485 * 359.97438 * 13 11 10 15 15 C 1.37875 * 119.99686 * 180.02562 * 13 11 10 16 16 N 1.31515 * 120.00274 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99823 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47194 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47157 * 119.99792 * 17 15 13 20 20 H 1.48506 * 109.47178 * 239.99683 * 17 15 13 21 21 C 1.46922 * 120.63244 * 179.72194 * 7 5 4 22 22 C 1.53781 * 113.61823 * 131.19412 * 2 1 3 23 23 C 1.53953 * 87.01765 * 89.23270 * 22 2 1 24 24 C 1.53776 * 87.11225 * 25.36226 * 23 22 2 25 25 H 1.09000 * 109.47330 * 69.67314 * 1 2 3 26 26 H 1.09011 * 109.46831 * 189.66745 * 1 2 3 27 27 H 1.09003 * 109.47463 * 309.66449 * 1 2 3 28 28 H 1.09002 * 109.47259 * 300.00293 * 4 3 2 29 29 H 1.09001 * 109.47074 * 60.00315 * 4 3 2 30 30 H 1.09001 * 109.59151 * 246.15628 * 8 7 5 31 31 H 1.09005 * 109.59202 * 6.44282 * 8 7 5 32 32 H 1.09000 * 109.49544 * 174.58699 * 9 8 7 33 33 H 1.09001 * 109.49335 * 294.68070 * 9 8 7 34 34 H 1.09001 * 109.45987 * 58.66049 * 10 9 8 35 35 H 1.09004 * 109.45848 * 178.62706 * 10 9 8 36 36 H 0.97004 * 120.00023 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.58475 * 353.41435 * 21 7 5 38 38 H 1.08996 * 109.58975 * 113.84341 * 21 7 5 39 39 H 1.08997 * 113.61205 * 203.74980 * 22 2 1 40 40 H 1.09002 * 113.60915 * 334.65200 * 22 2 1 41 41 H 1.09001 * 113.53485 * 270.81128 * 23 22 2 42 42 H 1.08998 * 113.66696 * 139.93521 * 23 22 2 43 43 H 1.09000 * 113.61467 * 220.09138 * 24 23 22 44 44 H 1.09005 * 113.68939 * 89.20118 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0848 1.3169 0.0000 4 6 1.5425 2.1761 1.0048 5 6 2.1954 3.5313 0.9128 6 8 3.0420 3.7405 0.0700 7 7 1.8391 4.5104 1.7677 8 6 0.8155 4.2719 2.7944 9 6 1.3912 4.6516 4.1623 10 6 1.9076 6.0913 4.1121 11 6 3.0245 6.1985 3.0713 12 1 3.8304 5.5118 3.3304 13 6 3.5543 7.6090 3.0456 14 1 3.1362 8.3551 3.7051 15 6 4.5721 7.9474 2.1792 16 7 5.0810 7.0390 1.3757 17 14 5.2294 9.6957 2.1478 18 1 4.4941 10.5189 3.1412 19 1 6.6756 9.6870 2.4848 20 1 5.0406 10.2712 0.7919 21 6 2.4709 5.8348 1.6944 22 6 2.1461 -0.9280 1.0602 23 6 2.0951 -2.0419 -0.0013 24 6 2.1460 -0.9280 -1.0602 25 1 -0.3634 0.3570 -0.9636 26 1 -0.3633 -1.0132 0.1726 27 1 -0.3634 0.6560 0.7911 28 1 0.4681 2.2797 0.8532 29 1 1.7308 1.7478 1.9894 30 1 -0.0620 4.8837 2.5847 31 1 0.5351 3.2185 2.7932 32 1 0.6120 4.5707 4.9201 33 1 2.2122 3.9790 4.4108 34 1 1.0916 6.7605 3.8393 35 1 2.2957 6.3723 5.0912 36 1 5.7973 7.2770 0.7665 37 1 3.2844 5.8119 0.9692 38 1 1.7311 6.5765 1.3933 39 1 3.1586 -0.6476 1.3506 40 1 1.4940 -1.1078 1.9150 41 1 1.1596 -2.6013 -0.0006 42 1 2.9745 -2.6859 -0.0023 43 1 1.4939 -1.1079 -1.9149 44 1 3.1580 -0.6468 -1.3517 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:59 Heat of formation + Delta-G solvation = -66.570054 kcal Electronic energy + Delta-G solvation = -23001.038926 eV Core-core repulsion = 19725.910933 eV Total energy + Delta-G solvation = -3275.127993 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09649 -39.16091 -36.78086 -35.55304 -33.38976 -31.76610 -29.96471 -29.27072 -28.03789 -25.85523 -25.02755 -24.24161 -23.10706 -21.80841 -19.83340 -18.92179 -18.23980 -17.31724 -16.52216 -15.89383 -15.73334 -15.41833 -15.12946 -14.54045 -14.07133 -14.00802 -13.69994 -13.59131 -13.13298 -12.72871 -12.62072 -12.43419 -12.34734 -12.07981 -11.95524 -11.77702 -11.43391 -11.20630 -10.99446 -10.91523 -10.87229 -10.48098 -10.40037 -10.32258 -10.22527 -9.88745 -9.44171 -9.19535 -9.09828 -8.79146 -8.41750 -7.72428 -5.97701 -4.07075 3.21896 3.29631 3.32605 3.39967 3.42791 4.10562 4.40337 4.41739 4.45127 4.62091 4.62869 5.06295 5.07369 5.20639 5.26221 5.28789 5.32472 5.39335 5.49568 5.50919 5.55560 5.64941 5.66301 5.69883 5.79396 5.87171 5.96008 6.06793 6.15073 6.22578 6.30343 6.59509 6.67586 6.84762 6.98012 7.11271 7.25929 7.35961 7.66691 7.89255 8.01811 8.27312 8.40551 8.91940 8.98788 9.58831 11.07514 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.003982 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.021714 B = 7029.720309 C = 7674.032817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 O -0.342 6.342 4 C 0.044 3.956 5 C 0.505 3.495 6 O -0.517 6.517 7 N -0.607 5.607 8 C 0.108 3.892 9 C -0.134 4.134 10 C -0.110 4.110 11 C 0.039 3.961 12 H 0.028 0.972 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.879 5.879 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.114 3.886 22 C -0.163 4.163 23 C -0.139 4.139 24 C -0.119 4.119 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.263 0.737 37 H 0.123 0.877 38 H 0.042 0.958 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 -15.740 0.811 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 O -0.260 6.260 4 C -0.036 4.036 5 C 0.291 3.709 6 O -0.392 6.392 7 N -0.342 5.342 8 C -0.016 4.016 9 C -0.172 4.172 10 C -0.148 4.148 11 C 0.020 3.980 12 H 0.047 0.953 13 C -0.560 4.560 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.517 5.517 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.006 4.006 22 C -0.200 4.200 23 C -0.177 4.177 24 C -0.157 4.157 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.141 0.859 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.629 -15.583 0.060 18.863 hybrid contribution 0.087 0.873 0.290 0.924 sum -10.542 -14.709 0.350 18.100 Atomic orbital electron populations 1.22108 0.93998 1.02813 1.03083 1.23075 0.92893 0.82326 0.97638 1.88132 1.62766 1.21307 1.53818 1.22284 0.97872 0.90659 0.92775 1.20076 0.83423 0.85172 0.82273 1.90731 1.31557 1.81543 1.35372 1.48463 1.39922 1.14066 1.31754 1.21647 0.91085 0.99935 0.88889 1.21952 1.00183 0.99702 0.95409 1.21620 0.99479 0.93168 1.00525 1.18914 0.92366 0.97089 0.89662 0.95339 1.21106 1.18442 0.94961 1.21493 0.92297 1.25066 0.96335 0.97238 0.95425 1.69899 1.26134 1.32914 1.22738 0.86537 0.78779 0.84850 0.77848 1.19799 1.21004 1.20962 1.22210 0.97312 0.77725 1.03340 1.23634 1.02405 0.96683 0.97306 1.22711 1.02269 0.96085 0.96591 1.23049 1.02425 0.93783 0.96429 0.91313 0.91107 0.91673 0.90882 0.91010 0.91893 0.91522 0.92179 0.92124 0.93149 0.92983 0.92654 0.85920 0.93962 0.89080 0.91320 0.90072 0.90807 0.90846 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.80 37.16 0.33 -1.19 16 2 C 0.08 0.96 1.39 -89.81 -0.12 0.83 16 3 O -0.34 -5.72 9.83 -55.14 -0.54 -6.26 16 4 C 0.04 0.68 4.14 36.01 0.15 0.83 16 5 C 0.51 10.64 7.78 -10.98 -0.09 10.55 16 6 O -0.52 -13.60 15.91 -14.35 -0.23 -13.82 16 7 N -0.61 -12.35 2.98 -173.00 -0.52 -12.86 16 8 C 0.11 1.65 6.34 -3.71 -0.02 1.62 16 9 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 10 C -0.11 -2.17 5.11 -26.69 -0.14 -2.31 16 11 C 0.04 0.96 2.24 -91.85 -0.21 0.76 16 12 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 13 C -0.52 -14.21 8.56 -34.44 -0.29 -14.51 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.88 -26.08 11.39 55.43 0.63 -25.44 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.11 2.81 5.38 -3.91 -0.02 2.78 16 22 C -0.16 -1.68 7.33 -25.83 -0.19 -1.87 16 23 C -0.14 -1.19 7.74 -25.83 -0.20 -1.39 16 24 C -0.12 -1.26 7.50 -25.92 -0.19 -1.46 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.52 7.34 -51.92 -0.38 0.14 16 27 H 0.06 0.57 6.27 -51.93 -0.33 0.25 16 28 H 0.07 0.93 6.19 -51.93 -0.32 0.61 16 29 H 0.07 0.97 7.61 -51.93 -0.40 0.58 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.79 5.93 -51.93 -0.31 0.49 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.12 3.56 5.12 -51.93 -0.27 3.30 16 38 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 41 H 0.08 0.57 7.64 -51.93 -0.40 0.17 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 342.57 15.07 5.16 5.16 Total: -1.00 -32.94 342.57 -9.20 -42.13 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.43 Total: 0.65 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -1.26 Total: -5.96 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.12 Total: -38.31 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.77 Total: -20.09 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.94 -9.20 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.439 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds