Wall clock time and date at job start Tue Mar 31 2020 06:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 112.85331 * 2 1 4 4 C 1.42899 * 113.99607 * 50.33149 * 3 2 1 5 5 C 1.50702 * 109.46876 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99928 * 179.72354 * 5 4 3 8 8 C 1.46931 * 120.63086 * 0.02562 * 7 5 4 9 9 C 1.52760 * 109.00543 * 233.58109 * 8 7 5 10 10 C 1.53039 * 109.38459 * 305.58756 * 9 8 7 11 11 C 1.53042 * 109.54031 * 61.24177 * 10 9 8 12 12 H 1.08998 * 109.49757 * 58.58603 * 11 10 9 13 13 C 1.50695 * 109.52442 * 178.67006 * 11 10 9 14 14 H 1.07999 * 120.00219 * 359.85116 * 13 11 10 15 15 C 1.37880 * 120.00132 * 179.85561 * 13 11 10 16 16 N 1.31514 * 119.99405 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00248 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46842 * 59.99649 * 17 15 13 19 19 H 1.48498 * 109.47128 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47190 * 299.99988 * 17 15 13 21 21 C 1.46925 * 120.62933 * 180.27723 * 7 5 4 22 22 C 1.53776 * 113.61384 * 131.19909 * 2 1 3 23 23 C 1.53953 * 87.02233 * 89.22753 * 22 2 1 24 24 C 1.53779 * 113.61407 * 228.80474 * 2 1 3 25 25 H 1.09003 * 109.46687 * 69.66073 * 1 2 3 26 26 H 1.08995 * 109.47345 * 189.66747 * 1 2 3 27 27 H 1.08996 * 109.46734 * 309.66972 * 1 2 3 28 28 H 1.09004 * 109.47206 * 60.00168 * 4 3 2 29 29 H 1.08994 * 109.47548 * 299.99825 * 4 3 2 30 30 H 1.08997 * 109.58191 * 353.41302 * 8 7 5 31 31 H 1.09000 * 109.58404 * 113.84014 * 8 7 5 32 32 H 1.09004 * 109.56227 * 185.55021 * 9 8 7 33 33 H 1.08994 * 109.36282 * 65.49817 * 9 8 7 34 34 H 1.09005 * 109.46040 * 301.21818 * 10 9 8 35 35 H 1.09001 * 109.45171 * 181.25894 * 10 9 8 36 36 H 0.97006 * 119.99602 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.58470 * 246.15337 * 21 7 5 38 38 H 1.08995 * 109.58817 * 6.44095 * 21 7 5 39 39 H 1.08998 * 113.61553 * 203.74712 * 22 2 1 40 40 H 1.09007 * 113.61374 * 334.65222 * 22 2 1 41 41 H 1.09004 * 113.54057 * 270.81696 * 23 22 2 42 42 H 1.09006 * 113.74721 * 139.94456 * 23 22 2 43 43 H 1.09009 * 113.61579 * 25.35106 * 24 2 1 44 44 H 1.08996 * 113.61959 * 156.25176 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0850 1.3168 0.0000 4 6 1.5428 2.1760 1.0049 5 6 2.1966 3.5307 0.9137 6 8 3.0433 3.7400 0.0709 7 7 1.8362 4.5116 1.7649 8 6 0.8079 4.2751 2.7873 9 6 -0.2727 5.3477 2.6634 10 6 0.3756 6.7323 2.7320 11 6 1.3569 6.8962 1.5690 12 1 0.8271 6.7677 0.6252 13 6 1.9708 8.2715 1.6181 14 1 1.6879 8.9617 2.3991 15 6 2.8937 8.6489 0.6657 16 7 3.2384 7.8084 -0.2852 17 14 3.6542 10.3541 0.7261 18 1 4.3742 10.5296 2.0129 19 1 4.6091 10.5103 -0.4004 20 1 2.5841 11.3776 0.6141 21 6 2.4603 5.8393 1.6845 22 6 2.1460 -0.9281 1.0602 23 6 2.0950 -2.0420 -0.0013 24 6 2.1460 -0.9280 -1.0602 25 1 -0.3633 0.3572 -0.9636 26 1 -0.3634 -1.0130 0.1726 27 1 -0.3632 0.6560 0.7910 28 1 1.7310 1.7476 1.9894 29 1 0.4684 2.2798 0.8532 30 1 0.3632 3.2913 2.6375 31 1 1.2590 4.3275 3.7782 32 1 -0.9887 5.2404 3.4784 33 1 -0.7872 5.2338 1.7093 34 1 0.9107 6.8364 3.6760 35 1 -0.3968 7.4985 2.6661 36 1 3.8880 8.0737 -0.9550 37 1 3.0486 6.0216 2.5839 38 1 3.1075 5.8863 0.8087 39 1 3.1585 -0.6478 1.3506 40 1 1.4938 -1.1080 1.9149 41 1 1.1594 -2.6013 -0.0008 42 1 2.9737 -2.6870 -0.0033 43 1 1.4939 -1.1079 -1.9151 44 1 3.1585 -0.6478 -1.3507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:03 Heat of formation + Delta-G solvation = -66.486622 kcal Electronic energy + Delta-G solvation = -22993.715889 eV Core-core repulsion = 19718.591514 eV Total energy + Delta-G solvation = -3275.124375 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09980 -39.16149 -36.78062 -35.55579 -33.38112 -31.77188 -29.96510 -29.25967 -28.03895 -25.86597 -25.02400 -24.23904 -23.10715 -21.80378 -19.83537 -18.92509 -18.24001 -17.31413 -16.53393 -15.88906 -15.71770 -15.41565 -15.12178 -14.56568 -14.11232 -14.01906 -13.70729 -13.49681 -13.11622 -12.80219 -12.60584 -12.42308 -12.36046 -12.11576 -11.88301 -11.77497 -11.43633 -11.21884 -10.98057 -10.90813 -10.87579 -10.51583 -10.41889 -10.31190 -10.22322 -9.88368 -9.44310 -9.20088 -9.09711 -8.79951 -8.40989 -7.72197 -5.97061 -4.06579 3.22346 3.29437 3.34418 3.39766 3.40926 4.11081 4.39238 4.41120 4.45260 4.61382 4.62958 5.06166 5.07103 5.20757 5.27382 5.30756 5.32941 5.37067 5.49339 5.52267 5.55296 5.64794 5.65591 5.68563 5.80541 5.87142 5.96079 6.06022 6.15083 6.21784 6.30338 6.59227 6.67538 6.84672 6.97782 7.11570 7.25563 7.36054 7.66264 7.89101 8.01826 8.27388 8.40797 8.91995 8.98691 9.59075 11.08072 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027836 B = 0.003956 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.633993 B = 7075.792497 C = 7762.759742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 O -0.342 6.342 4 C 0.044 3.956 5 C 0.505 3.495 6 O -0.517 6.517 7 N -0.607 5.607 8 C 0.109 3.891 9 C -0.135 4.135 10 C -0.110 4.110 11 C 0.040 3.960 12 H 0.029 0.971 13 C -0.523 4.523 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.879 5.879 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.114 3.886 22 C -0.162 4.162 23 C -0.139 4.139 24 C -0.120 4.120 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.264 0.736 37 H 0.042 0.958 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.958 -17.580 4.755 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 O -0.260 6.260 4 C -0.036 4.036 5 C 0.291 3.709 6 O -0.392 6.392 7 N -0.342 5.342 8 C -0.015 4.015 9 C -0.173 4.173 10 C -0.148 4.148 11 C 0.021 3.979 12 H 0.047 0.953 13 C -0.562 4.562 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.517 5.517 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.006 4.006 22 C -0.200 4.200 23 C -0.177 4.177 24 C -0.157 4.157 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.140 0.860 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.215 -17.424 3.987 18.924 hybrid contribution 0.104 0.874 0.336 0.942 sum -6.111 -16.550 4.323 18.164 Atomic orbital electron populations 1.22109 0.93943 1.02780 1.03220 1.23070 0.92959 0.82301 0.97557 1.88133 1.62693 1.21309 1.53882 1.22284 0.98116 0.90581 0.92613 1.20077 0.83635 0.85228 0.82007 1.90733 1.32171 1.81612 1.34687 1.48467 1.39570 1.13562 1.32609 1.21555 0.89701 0.98253 0.92000 1.21881 0.97104 0.97005 1.01305 1.21622 0.98970 0.93680 1.00528 1.18971 0.91804 0.93804 0.93311 0.95326 1.21032 1.24618 0.98214 1.12327 0.92415 1.25063 0.96548 0.97204 0.95207 1.69884 1.32403 1.34852 1.14514 0.86647 0.79085 0.84628 0.77578 1.20255 1.21242 1.20300 1.22301 0.97825 0.77157 1.03294 1.23630 1.02284 0.96749 0.97336 1.22713 1.02275 0.96067 0.96604 1.23054 1.02415 0.93749 0.96490 0.91221 0.91119 0.91655 0.91177 0.90711 0.91540 0.91906 0.92143 0.92150 0.93148 0.92986 0.92541 0.93977 0.85951 0.89185 0.91333 0.90058 0.90839 0.90785 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 8.80 37.16 0.33 -1.24 16 2 C 0.08 0.96 1.39 -89.81 -0.12 0.84 16 3 O -0.34 -5.72 9.83 -55.14 -0.54 -6.26 16 4 C 0.04 0.68 4.14 36.01 0.15 0.83 16 5 C 0.50 10.64 7.78 -10.98 -0.09 10.55 16 6 O -0.52 -13.59 15.91 -14.35 -0.23 -13.82 16 7 N -0.61 -12.35 2.98 -173.00 -0.52 -12.87 16 8 C 0.11 1.66 6.32 -3.93 -0.02 1.63 16 9 C -0.13 -2.12 6.06 -26.83 -0.16 -2.28 16 10 C -0.11 -2.17 5.11 -26.69 -0.14 -2.31 16 11 C 0.04 1.00 2.25 -91.63 -0.21 0.79 16 12 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 13 C -0.52 -14.27 8.57 -34.44 -0.29 -14.57 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 16 N -0.88 -26.07 11.39 55.43 0.63 -25.44 16 17 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.11 2.81 5.40 -3.69 -0.02 2.79 16 22 C -0.16 -1.62 7.33 -25.83 -0.19 -1.81 16 23 C -0.14 -1.16 7.74 -25.83 -0.20 -1.36 16 24 C -0.12 -1.26 7.50 -25.92 -0.19 -1.46 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.53 7.34 -51.93 -0.38 0.15 16 27 H 0.06 0.60 6.27 -51.93 -0.33 0.27 16 28 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 29 H 0.08 1.00 5.93 -51.93 -0.31 0.69 16 30 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.12 3.55 5.12 -51.93 -0.27 3.29 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.59 8.10 -51.93 -0.42 0.16 16 41 H 0.08 0.56 7.64 -51.93 -0.40 0.16 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.69 8.10 -51.92 -0.42 0.27 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 342.57 15.07 5.16 5.16 Total: -1.00 -32.88 342.57 -9.20 -42.08 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.43 Total: 0.65 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.26 Total: -5.92 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.12 Total: -38.30 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.77 Total: -20.08 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.88 -9.20 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.410 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds