Wall clock time and date at job start Tue Mar 31 2020 06:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 112.85331 * 2 1 4 4 C 1.42899 * 113.99607 * 50.33149 * 3 2 1 5 5 C 1.50702 * 109.46876 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99928 * 179.72354 * 5 4 3 8 8 C 1.46931 * 120.63086 * 0.02562 * 7 5 4 9 9 C 1.52760 * 109.00543 * 233.58109 * 8 7 5 10 10 C 1.53039 * 109.38459 * 305.58756 * 9 8 7 11 11 C 1.53042 * 109.54031 * 61.24177 * 10 9 8 12 12 H 1.08998 * 109.49757 * 58.58603 * 11 10 9 13 13 C 1.50695 * 109.52442 * 178.67006 * 11 10 9 14 14 H 1.07999 * 120.00219 * 359.85116 * 13 11 10 15 15 C 1.37880 * 120.00132 * 179.85561 * 13 11 10 16 16 N 1.31514 * 119.99405 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00248 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46842 * 59.99649 * 17 15 13 19 19 H 1.48498 * 109.47128 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47190 * 299.99988 * 17 15 13 21 21 C 1.46925 * 120.62933 * 180.27723 * 7 5 4 22 22 C 1.53776 * 113.61384 * 131.19909 * 2 1 3 23 23 C 1.53953 * 87.02233 * 89.22753 * 22 2 1 24 24 C 1.53779 * 113.61407 * 228.80474 * 2 1 3 25 25 H 1.09003 * 109.46687 * 69.66073 * 1 2 3 26 26 H 1.08995 * 109.47345 * 189.66747 * 1 2 3 27 27 H 1.08996 * 109.46734 * 309.66972 * 1 2 3 28 28 H 1.09004 * 109.47206 * 60.00168 * 4 3 2 29 29 H 1.08994 * 109.47548 * 299.99825 * 4 3 2 30 30 H 1.08997 * 109.58191 * 353.41302 * 8 7 5 31 31 H 1.09000 * 109.58404 * 113.84014 * 8 7 5 32 32 H 1.09004 * 109.56227 * 185.55021 * 9 8 7 33 33 H 1.08994 * 109.36282 * 65.49817 * 9 8 7 34 34 H 1.09005 * 109.46040 * 301.21818 * 10 9 8 35 35 H 1.09001 * 109.45171 * 181.25894 * 10 9 8 36 36 H 0.97006 * 119.99602 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.58470 * 246.15337 * 21 7 5 38 38 H 1.08995 * 109.58817 * 6.44095 * 21 7 5 39 39 H 1.08998 * 113.61553 * 203.74712 * 22 2 1 40 40 H 1.09007 * 113.61374 * 334.65222 * 22 2 1 41 41 H 1.09004 * 113.54057 * 270.81696 * 23 22 2 42 42 H 1.09006 * 113.74721 * 139.94456 * 23 22 2 43 43 H 1.09009 * 113.61579 * 25.35106 * 24 2 1 44 44 H 1.08996 * 113.61959 * 156.25176 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0850 1.3168 0.0000 4 6 1.5428 2.1760 1.0049 5 6 2.1966 3.5307 0.9137 6 8 3.0433 3.7400 0.0709 7 7 1.8362 4.5116 1.7649 8 6 0.8079 4.2751 2.7873 9 6 -0.2727 5.3477 2.6634 10 6 0.3756 6.7323 2.7320 11 6 1.3569 6.8962 1.5690 12 1 0.8271 6.7677 0.6252 13 6 1.9708 8.2715 1.6181 14 1 1.6879 8.9617 2.3991 15 6 2.8937 8.6489 0.6657 16 7 3.2384 7.8084 -0.2852 17 14 3.6542 10.3541 0.7261 18 1 4.3742 10.5296 2.0129 19 1 4.6091 10.5103 -0.4004 20 1 2.5841 11.3776 0.6141 21 6 2.4603 5.8393 1.6845 22 6 2.1460 -0.9281 1.0602 23 6 2.0950 -2.0420 -0.0013 24 6 2.1460 -0.9280 -1.0602 25 1 -0.3633 0.3572 -0.9636 26 1 -0.3634 -1.0130 0.1726 27 1 -0.3632 0.6560 0.7910 28 1 1.7310 1.7476 1.9894 29 1 0.4684 2.2798 0.8532 30 1 0.3632 3.2913 2.6375 31 1 1.2590 4.3275 3.7782 32 1 -0.9887 5.2404 3.4784 33 1 -0.7872 5.2338 1.7093 34 1 0.9107 6.8364 3.6760 35 1 -0.3968 7.4985 2.6661 36 1 3.8880 8.0737 -0.9550 37 1 3.0486 6.0216 2.5839 38 1 3.1075 5.8863 0.8087 39 1 3.1585 -0.6478 1.3506 40 1 1.4938 -1.1080 1.9149 41 1 1.1594 -2.6013 -0.0008 42 1 2.9737 -2.6870 -0.0033 43 1 1.4939 -1.1079 -1.9151 44 1 3.1585 -0.6478 -1.3507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855255191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:03 Heat of formation + Delta-G solvation = -86.903622 kcal Electronic energy + Delta-G solvation = -22994.601236 eV Core-core repulsion = 19718.591514 eV Total energy + Delta-G solvation = -3276.009722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.27589 -40.48350 -38.38663 -36.72597 -35.32450 -33.49623 -31.70055 -29.99568 -29.44615 -26.95547 -26.65332 -25.73975 -24.01335 -23.40592 -21.51293 -19.85143 -19.78181 -18.62738 -18.21255 -17.40199 -17.02599 -16.87657 -16.48016 -16.00561 -15.40775 -15.30974 -15.15270 -14.70884 -14.51345 -14.37346 -14.14532 -13.77880 -13.49188 -13.31205 -13.04770 -12.86956 -12.84034 -12.71196 -12.28720 -12.26593 -12.18408 -12.09357 -11.81469 -11.68620 -11.63572 -11.16287 -11.07992 -10.95013 -10.58687 -10.48286 -10.40838 -9.42901 -8.11529 -6.29576 1.39735 1.41578 1.50155 1.66920 1.91294 2.41083 2.93924 3.16981 3.51504 3.64152 3.71393 3.87798 3.92063 3.99071 4.14645 4.17275 4.27208 4.35082 4.42283 4.60195 4.61953 4.74374 4.76043 4.80506 4.86032 4.87130 4.88118 5.02772 5.06887 5.10692 5.14803 5.25723 5.27721 5.30017 5.35995 5.48779 5.53904 5.63172 5.88835 5.99146 6.25241 6.33576 6.66282 6.84216 7.32438 7.41389 8.91480 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027836 B = 0.003956 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.633993 B = 7075.792497 C = 7762.759742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.064 3.936 3 O -0.385 6.385 4 C 0.059 3.941 5 C 0.491 3.509 6 O -0.587 6.587 7 N -0.608 5.608 8 C 0.100 3.900 9 C -0.128 4.128 10 C -0.106 4.106 11 C 0.038 3.962 12 H -0.015 1.015 13 C -0.538 4.538 14 H 0.064 0.936 15 C 0.008 3.992 16 N -0.917 5.917 17 Si 0.959 3.041 18 H -0.266 1.266 19 H -0.290 1.290 20 H -0.267 1.267 21 C 0.125 3.875 22 C -0.160 4.160 23 C -0.123 4.123 24 C -0.132 4.132 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.259 0.741 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.355 -19.381 7.377 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 O -0.304 6.304 4 C -0.020 4.020 5 C 0.279 3.721 6 O -0.467 6.467 7 N -0.342 5.342 8 C -0.021 4.021 9 C -0.165 4.165 10 C -0.143 4.143 11 C 0.019 3.981 12 H 0.003 0.997 13 C -0.576 4.576 14 H 0.082 0.918 15 C -0.192 4.192 16 N -0.556 5.556 17 Si 0.784 3.216 18 H -0.191 1.191 19 H -0.216 1.216 20 H -0.191 1.191 21 C 0.003 3.997 22 C -0.197 4.197 23 C -0.160 4.160 24 C -0.169 4.169 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.666 -19.240 6.664 22.128 hybrid contribution 0.843 1.417 -0.500 1.722 sum -7.823 -17.823 6.164 20.417 Atomic orbital electron populations 1.22128 0.91814 1.04701 1.03112 1.23553 0.94647 0.80272 0.98956 1.88101 1.64144 1.23557 1.54623 1.22210 0.98468 0.87114 0.94197 1.21249 0.82825 0.87318 0.80672 1.90694 1.35406 1.83101 1.37544 1.48506 1.40239 1.11773 1.33666 1.22009 0.88341 1.00460 0.91275 1.21859 0.97682 0.94162 1.02841 1.21517 0.97865 0.96806 0.98142 1.18911 0.92615 0.92971 0.93591 0.99728 1.21523 1.24333 0.99648 1.12103 0.91792 1.25944 0.97247 1.01077 0.94901 1.70108 1.33152 1.36886 1.15437 0.85593 0.78298 0.79999 0.77697 1.19077 1.21620 1.19145 1.21701 0.97366 0.80011 1.00621 1.23589 1.01581 0.96537 0.98023 1.22709 1.03869 0.95235 0.94189 1.23144 1.01295 0.94972 0.97538 0.92145 0.88408 0.90723 0.87618 0.87871 0.86982 0.89754 0.87272 0.93020 0.92320 0.92914 0.93217 0.94466 0.91036 0.90977 0.89040 0.87587 0.90164 0.89915 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 8.80 71.98 0.63 -1.90 16 2 C 0.06 1.42 1.39 -10.27 -0.01 1.40 16 3 O -0.38 -12.80 9.83 -129.94 -1.28 -14.07 16 4 C 0.06 1.73 4.14 71.24 0.29 2.02 16 5 C 0.49 21.08 7.78 87.66 0.68 21.76 16 6 O -0.59 -33.01 15.91 16.00 0.25 -32.76 16 7 N -0.61 -24.73 2.98 -819.64 -2.44 -27.17 16 8 C 0.10 2.69 6.32 86.22 0.54 3.24 16 9 C -0.13 -3.56 6.06 30.53 0.19 -3.38 16 10 C -0.11 -4.02 5.11 30.62 0.16 -3.86 16 11 C 0.04 1.97 2.25 -11.45 -0.03 1.94 16 12 H -0.02 -0.92 8.14 -2.39 -0.02 -0.93 16 13 C -0.54 -30.10 8.57 25.60 0.22 -29.88 16 14 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 15 C 0.01 0.44 5.30 84.66 0.45 0.88 16 16 N -0.92 -57.65 11.39 21.45 0.24 -57.41 16 17 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 C 0.13 6.44 5.40 86.38 0.47 6.91 16 22 C -0.16 -2.76 7.33 31.18 0.23 -2.53 16 23 C -0.12 -1.71 7.74 31.18 0.24 -1.47 16 24 C -0.13 -2.68 7.50 31.12 0.23 -2.45 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.10 1.01 7.34 -2.39 -0.02 0.99 16 27 H 0.07 1.03 6.27 -2.39 -0.01 1.01 16 28 H 0.11 2.31 7.87 -2.38 -0.02 2.30 16 29 H 0.10 2.40 5.93 -2.39 -0.01 2.39 16 30 H 0.11 2.04 5.93 -2.39 -0.01 2.02 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 2.12 8.14 -2.38 -0.02 2.11 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 37 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.07 4.47 5.12 -2.39 -0.01 4.45 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.09 1.16 8.10 -2.38 -0.02 1.14 16 41 H 0.11 0.99 7.64 -2.38 -0.02 0.97 16 42 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.08 1.48 8.10 -2.38 -0.02 1.46 16 44 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -80.28 342.57 4.07 -76.21 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.97 Total: 15.37 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 4.29 Total: -7.31 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -2.20 Total: -84.58 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -1.02 Total: -46.83 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -80.28 4.07 -76.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.692 kcal (2) G-P(sol) polarization free energy of solvation -80.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds