Wall clock time and date at job start Tue Mar 31 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00204 * 2 1 4 4 H 1.48504 * 109.46868 * 270.00028 * 3 2 1 5 5 H 1.48504 * 109.47407 * 29.99454 * 3 2 1 6 6 H 1.48501 * 109.47609 * 150.00025 * 3 2 1 7 7 C 1.37882 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00042 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99683 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.49547 * 300.05446 * 9 7 2 11 11 C 1.53038 * 109.52761 * 60.14085 * 9 7 2 12 12 C 1.53045 * 109.53497 * 181.33412 * 11 9 7 13 13 C 1.53620 * 109.24382 * 298.50503 * 12 11 9 14 14 N 1.46934 * 108.54070 * 54.86134 * 13 12 11 15 15 C 1.34779 * 120.63203 * 126.36752 * 14 13 12 16 16 O 1.21279 * 119.99789 * 179.71544 * 15 14 13 17 17 C 1.50700 * 119.99758 * 359.72163 * 15 14 13 18 18 C 1.53001 * 109.46865 * 180.02562 * 17 15 14 19 19 O 1.42902 * 110.53680 * 302.61300 * 18 17 15 20 20 C 1.54887 * 110.48548 * 65.22211 * 18 17 15 21 21 C 1.54893 * 102.74533 * 156.62347 * 20 18 17 22 22 C 1.54266 * 104.19500 * 322.05712 * 21 20 18 23 23 C 1.53872 * 106.60044 * 23.61099 * 22 21 20 24 24 C 1.46928 * 118.73596 * 306.09285 * 14 13 12 25 25 H 0.97000 * 119.99725 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.45551 * 301.34784 * 11 9 7 27 27 H 1.08992 * 109.46194 * 61.32884 * 11 9 7 28 28 H 1.09002 * 109.49967 * 58.58682 * 12 11 9 29 29 H 1.09004 * 109.49220 * 178.67983 * 12 11 9 30 30 H 1.09002 * 109.74396 * 295.12852 * 13 12 11 31 31 H 1.09001 * 109.66987 * 174.54972 * 13 12 11 32 32 H 1.08998 * 109.47232 * 59.99892 * 17 15 14 33 33 H 1.08994 * 109.47010 * 299.99864 * 17 15 14 34 34 H 0.96693 * 114.00431 * 57.38289 * 19 18 17 35 35 H 1.09001 * 110.75744 * 274.93249 * 20 18 17 36 36 H 1.09000 * 110.75698 * 38.31067 * 20 18 17 37 37 H 1.09002 * 110.48578 * 203.38190 * 21 20 18 38 38 H 1.08998 * 110.60430 * 80.79077 * 21 20 18 39 39 H 1.09002 * 110.02957 * 264.32709 * 22 21 20 40 40 H 1.09000 * 110.07144 * 142.92082 * 22 21 20 41 41 H 1.09003 * 110.03622 * 240.71485 * 23 22 21 42 42 H 1.09005 * 110.03465 * 119.28158 * 23 22 21 43 43 H 1.09000 * 109.58474 * 173.64770 * 24 14 13 44 44 H 1.08996 * 109.58794 * 293.93351 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6231 -2.5566 0.8896 11 6 0.3738 -2.5833 -1.2507 12 6 -0.4166 -3.8937 -1.2342 13 6 0.5635 -5.0765 -1.2510 14 7 1.5000 -4.9231 -0.1293 15 6 1.6757 -5.9206 0.7600 16 8 2.4555 -5.7836 1.6787 17 6 0.9031 -7.2061 0.6126 18 6 1.2852 -8.1631 1.7436 19 8 2.6932 -8.4075 1.7393 20 6 0.8385 -7.5912 3.1119 21 6 0.7308 -8.8599 3.9938 22 6 0.1542 -9.9318 3.0459 23 6 0.5068 -9.4888 1.6152 24 6 2.2460 -3.6640 0.0011 25 1 -0.4850 0.8401 -0.0004 26 1 -0.3187 -1.7417 -1.2659 27 1 1.0044 -2.5510 -2.1391 28 1 -1.0289 -3.9381 -0.3335 29 1 -1.0586 -3.9423 -2.1138 30 1 1.1165 -5.0832 -2.1903 31 1 0.0129 -6.0109 -1.1420 32 1 1.1402 -7.6644 -0.3474 33 1 -0.1652 -6.9955 0.6608 34 1 3.2314 -7.6080 1.8175 35 1 1.5892 -6.9077 3.5085 36 1 -0.1292 -7.0968 3.0265 37 1 0.0538 -8.6867 4.8304 38 1 1.7141 -9.1600 4.3559 39 1 -0.9279 -9.9903 3.1627 40 1 0.6054 -10.9010 3.2586 41 1 -0.4043 -9.3323 1.0375 42 1 1.1299 -10.2425 1.1337 43 1 2.8057 -3.6661 0.9364 44 1 2.9350 -3.5591 -0.8369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:31 Heat of formation + Delta-G solvation = -111.761024 kcal Electronic energy + Delta-G solvation = -23290.127716 eV Core-core repulsion = 20013.040096 eV Total energy + Delta-G solvation = -3277.087620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.27684 -38.52344 -36.69095 -34.50981 -33.59847 -31.58228 -31.03342 -29.89575 -28.75071 -26.15357 -25.08645 -24.00735 -21.76248 -20.82802 -20.16592 -19.68059 -18.36471 -16.93218 -16.43137 -16.27889 -15.63585 -15.36112 -14.99786 -14.73018 -14.51421 -13.74031 -13.56836 -13.34296 -13.15503 -12.78046 -12.59962 -12.27203 -12.13309 -12.04019 -11.81934 -11.47678 -11.22339 -11.04812 -10.98496 -10.90186 -10.83428 -10.67503 -10.46509 -10.33868 -10.01113 -9.85640 -9.68832 -9.52284 -9.30378 -8.87444 -8.43013 -7.97928 -6.05990 -4.13190 2.92293 3.27080 3.34112 3.37054 3.45823 4.26587 4.39356 4.53261 4.56769 4.78595 4.93868 5.11269 5.22478 5.27906 5.30047 5.43480 5.50180 5.56980 5.61336 5.69134 5.72578 5.77729 5.86928 5.94007 6.01998 6.06646 6.16472 6.27306 6.30132 6.33290 6.41989 6.44223 6.60589 6.74129 6.89110 7.10409 7.27483 7.64516 7.82468 7.90495 7.99204 8.03191 8.32623 8.55311 8.90403 9.52042 10.99603 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029818 B = 0.003965 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.797775 B = 7059.408059 C = 7339.303361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.135 4.135 13 C 0.107 3.893 14 N -0.599 5.599 15 C 0.513 3.487 16 O -0.556 6.556 17 C -0.167 4.167 18 C 0.149 3.851 19 O -0.563 6.563 20 C -0.147 4.147 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.112 4.112 24 C 0.115 3.885 25 H 0.261 0.739 26 H 0.096 0.904 27 H 0.036 0.964 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.388 0.612 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 -16.281 0.028 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.173 4.173 13 C -0.016 4.016 14 N -0.330 5.330 15 C 0.301 3.699 16 O -0.437 6.437 17 C -0.207 4.207 18 C 0.107 3.893 19 O -0.375 6.375 20 C -0.185 4.185 21 C -0.158 4.158 22 C -0.159 4.159 23 C -0.150 4.150 24 C -0.005 4.005 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.242 0.758 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.462 -16.667 0.437 16.854 hybrid contribution 0.417 1.631 -0.185 1.694 sum -2.045 -15.036 0.252 15.177 Atomic orbital electron populations 1.69867 1.05915 1.26523 1.50460 1.24934 0.94858 0.99109 0.94875 0.86576 0.79943 0.83300 0.78094 1.20674 1.21219 1.19828 1.21073 0.93001 0.90273 1.51021 0.92471 1.18962 0.92930 0.91180 0.94766 0.95295 1.21637 0.99479 0.95369 0.98614 1.22082 0.97586 0.96620 1.00998 1.21878 0.91483 0.99104 0.89145 1.48336 1.42045 1.16094 1.26535 1.20489 0.82811 0.84853 0.81733 1.90514 1.38792 1.81586 1.32838 1.22463 1.01850 0.94561 1.01839 1.21597 0.82358 0.92958 0.92392 1.86336 1.15929 1.38909 1.96302 1.23174 1.02159 0.97635 0.95519 1.22302 1.00926 0.95018 0.97567 1.22098 1.00350 0.98919 0.94532 1.22164 0.99108 0.96106 0.97627 1.22028 0.95094 0.81855 1.01564 0.92950 0.88617 0.94560 0.92351 0.92421 0.91747 0.91072 0.88625 0.88258 0.75846 0.89652 0.91282 0.91996 0.91469 0.91942 0.91919 0.90677 0.90732 0.90194 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.64 11.32 55.43 0.63 -24.02 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.76 8.56 -34.44 -0.29 -14.05 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.47 4.96 -26.69 -0.13 -2.60 16 12 C -0.13 -2.30 6.10 -26.39 -0.16 -2.46 16 13 C 0.11 1.58 6.37 -3.48 -0.02 1.55 16 14 N -0.60 -10.56 2.97 -172.49 -0.51 -11.07 16 15 C 0.51 8.60 7.28 -10.98 -0.08 8.52 16 16 O -0.56 -10.70 11.78 -13.62 -0.16 -10.86 16 17 C -0.17 -2.12 3.20 -27.88 -0.09 -2.21 16 18 C 0.15 1.93 0.83 -88.96 -0.07 1.85 16 19 O -0.56 -8.47 13.03 -54.40 -0.71 -9.18 16 20 C -0.15 -1.95 5.30 -24.74 -0.13 -2.09 16 21 C -0.12 -1.36 6.81 -25.07 -0.17 -1.53 16 22 C -0.12 -1.20 6.80 -25.61 -0.17 -1.37 16 23 C -0.11 -1.18 6.13 -25.61 -0.16 -1.34 16 24 C 0.12 2.43 5.65 -3.71 -0.02 2.40 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.10 2.39 6.05 -51.93 -0.31 2.07 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.82 5.93 -51.93 -0.31 0.51 16 32 H 0.10 1.07 7.93 -51.93 -0.41 0.66 16 33 H 0.10 1.11 7.68 -51.93 -0.40 0.71 16 34 H 0.39 6.10 6.39 45.56 0.29 6.39 16 35 H 0.08 1.33 6.99 -51.93 -0.36 0.97 16 36 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.66 7.84 -51.93 -0.41 0.25 16 42 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 43 H 0.08 1.80 7.01 -51.93 -0.36 1.43 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 334.89 15.07 5.05 5.05 Total: -1.00 -28.73 334.89 -9.42 -38.15 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.88 Total: 6.98 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -1.81 Total: -10.91 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.12 Total: -35.08 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.87 Total: -20.04 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.73 -9.42 -38.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.614 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds