Wall clock time and date at job start Tue Mar 31 2020 05:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48499 * 109.47162 * 270.00122 * 3 2 1 5 5 H 1.48497 * 109.47384 * 29.99909 * 3 2 1 6 6 H 1.48500 * 109.47058 * 150.00184 * 3 2 1 7 7 C 1.37873 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99915 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00212 * 179.97438 * 7 2 1 10 10 H 1.08993 * 109.52713 * 59.91707 * 9 7 2 11 11 C 1.53040 * 109.49690 * 299.83470 * 9 7 2 12 12 C 1.53039 * 109.53898 * 178.68019 * 11 9 7 13 13 C 1.52769 * 109.38026 * 61.24573 * 12 11 9 14 14 N 1.46924 * 109.00557 * 305.58622 * 13 12 11 15 15 C 1.34776 * 120.62981 * 233.58771 * 14 13 12 16 16 O 1.21282 * 119.99940 * 179.72426 * 15 14 13 17 17 C 1.50698 * 120.00035 * 359.71541 * 15 14 13 18 18 C 1.53006 * 109.47184 * 180.02562 * 17 15 14 19 19 O 1.42902 * 110.01133 * 64.30061 * 18 17 15 20 20 C 1.54266 * 110.03265 * 302.91449 * 18 17 15 21 21 C 1.54973 * 104.15673 * 217.13614 * 20 18 17 22 22 C 1.54888 * 102.77627 * 37.88686 * 21 20 18 23 23 C 1.53868 * 110.03170 * 185.69380 * 18 17 15 24 24 C 1.46929 * 118.73954 * 53.30950 * 14 13 12 25 25 H 0.97004 * 119.99759 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46573 * 298.70625 * 11 9 7 27 27 H 1.09003 * 109.46205 * 58.67913 * 11 9 7 28 28 H 1.09000 * 109.50218 * 181.31533 * 12 11 9 29 29 H 1.08996 * 109.50189 * 301.38557 * 12 11 9 30 30 H 1.08998 * 109.50768 * 185.70946 * 13 12 11 31 31 H 1.08992 * 109.43427 * 65.41966 * 13 12 11 32 32 H 1.09001 * 109.46665 * 60.00498 * 17 15 14 33 33 H 1.08993 * 109.47304 * 300.00054 * 17 15 14 34 34 H 0.96698 * 114.00657 * 300.69692 * 19 18 17 35 35 H 1.08999 * 110.48405 * 335.78046 * 20 18 17 36 36 H 1.08997 * 110.49029 * 98.42471 * 20 18 17 37 37 H 1.09005 * 110.71533 * 279.57200 * 21 20 18 38 38 H 1.08997 * 110.92008 * 156.29977 * 21 20 18 39 39 H 1.08997 * 110.48272 * 203.40871 * 22 21 20 40 40 H 1.08995 * 110.48469 * 80.76374 * 22 21 20 41 41 H 1.09004 * 110.03298 * 238.57238 * 23 18 17 42 42 H 1.08999 * 110.03614 * 0.02562 * 23 18 17 43 43 H 1.09001 * 109.58590 * 66.43304 * 24 14 13 44 44 H 1.08999 * 109.58821 * 186.71200 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 1 3.8762 -0.6794 0.8877 11 6 4.0218 -0.4761 -1.2526 12 6 5.5519 -0.4467 -1.2377 13 6 6.0865 -1.8778 -1.2491 14 7 5.4860 -2.6218 -0.1335 15 6 6.2629 -3.2721 0.7553 16 8 5.7553 -3.8786 1.6748 17 6 7.7623 -3.2459 0.6065 18 6 8.4012 -4.0558 1.7364 19 8 8.0263 -5.4303 1.6254 20 6 7.9580 -3.4960 3.1039 21 6 9.2189 -3.6296 3.9949 22 6 10.3682 -3.2832 3.0161 23 6 9.9330 -3.9210 1.6806 24 6 4.0228 -2.6382 -0.0016 25 1 -0.4850 0.8401 0.0004 26 1 3.6774 -1.0055 -2.1410 27 1 3.6395 0.5446 -1.2671 28 1 5.9142 0.0852 -2.1175 29 1 5.8973 0.0614 -0.3375 30 1 7.1705 -1.8622 -1.1364 31 1 5.8218 -2.3563 -2.1919 32 1 8.1141 -2.2153 0.6538 33 1 8.0398 -3.6809 -0.3536 34 1 7.0721 -5.5822 1.6646 35 1 7.6656 -2.4501 3.0112 36 1 7.1379 -4.0877 3.5107 37 1 9.3221 -4.6491 4.3667 38 1 9.1882 -2.9199 4.8216 39 1 11.3061 -3.7196 3.3595 40 1 10.4655 -2.2029 2.9091 41 1 10.3905 -4.9042 1.5697 42 1 10.2212 -3.2783 0.8489 43 1 3.5863 -3.1800 -0.8407 44 1 3.7455 -3.1265 0.9326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:37 Heat of formation + Delta-G solvation = -103.539894 kcal Electronic energy + Delta-G solvation = -23439.000302 eV Core-core repulsion = 20162.269177 eV Total energy + Delta-G solvation = -3276.731125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.43290 -38.69594 -36.91092 -34.74327 -33.64072 -31.89828 -31.19372 -30.24253 -28.81922 -26.35037 -25.09687 -24.33615 -21.75223 -21.05092 -20.33753 -19.66367 -18.58836 -17.05091 -16.72551 -16.57295 -15.79279 -15.59967 -15.02773 -14.82963 -14.61381 -13.88089 -13.60223 -13.56942 -13.22123 -13.10525 -12.69681 -12.59205 -12.39416 -12.29275 -11.95820 -11.49879 -11.47696 -11.26853 -11.20238 -11.06780 -10.86269 -10.70068 -10.55988 -10.37003 -10.20515 -9.90622 -9.80118 -9.60334 -9.34064 -9.05843 -8.61127 -8.17032 -6.13898 -4.14269 2.82565 3.19729 3.30661 3.31931 3.34210 4.17537 4.34134 4.45259 4.47704 4.73072 4.81461 5.03010 5.06166 5.16834 5.17443 5.27745 5.37432 5.41996 5.48780 5.52729 5.62579 5.72674 5.76351 5.80135 5.88187 5.92999 5.97976 5.99886 6.04980 6.13763 6.26509 6.30240 6.37406 6.46763 6.61574 6.67298 6.78643 7.07593 7.39867 7.67206 7.72369 7.84018 8.39780 8.45102 8.89242 9.47504 10.99112 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027170 B = 0.004342 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.287790 B = 6447.501997 C = 6491.319505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.006 3.994 10 H 0.029 0.971 11 C -0.123 4.123 12 C -0.140 4.140 13 C 0.110 3.890 14 N -0.605 5.605 15 C 0.512 3.488 16 O -0.550 6.550 17 C -0.168 4.168 18 C 0.149 3.851 19 O -0.563 6.563 20 C -0.139 4.139 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.113 4.113 24 C 0.126 3.874 25 H 0.265 0.735 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.385 0.615 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.299 -4.006 0.130 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.094 0.906 9 C -0.014 4.014 10 H 0.047 0.953 11 C -0.160 4.160 12 C -0.178 4.178 13 C -0.013 4.013 14 N -0.337 5.337 15 C 0.300 3.700 16 O -0.429 6.429 17 C -0.209 4.209 18 C 0.107 3.893 19 O -0.373 6.373 20 C -0.176 4.176 21 C -0.163 4.163 22 C -0.161 4.161 23 C -0.150 4.150 24 C 0.006 3.994 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.237 0.763 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 20.480 -4.299 0.552 20.934 hybrid contribution -0.345 1.335 -0.261 1.403 sum 20.136 -2.964 0.291 20.355 Atomic orbital electron populations 1.69892 1.06266 1.27033 1.50370 1.24979 0.94676 0.98988 0.94327 0.86830 0.79920 0.83606 0.77780 1.20564 1.22452 1.19181 1.20901 0.88274 0.94747 1.51450 0.90586 1.19457 0.96905 0.91434 0.93583 0.95257 1.21995 0.91921 1.00797 1.01313 1.21938 0.98821 0.95455 1.01609 1.21624 0.97229 0.92735 0.89738 1.48362 1.08485 1.49846 1.26989 1.20520 0.88933 0.78915 0.81656 1.90612 1.75574 1.44448 1.32293 1.22580 0.93269 1.03062 1.01956 1.21493 0.93642 0.81612 0.92530 1.86387 1.30416 1.24338 1.96137 1.23028 0.98027 1.01697 0.94898 1.22521 0.94741 1.01484 0.97564 1.22357 0.98461 1.00395 0.94917 1.22160 0.92964 1.01866 0.98059 1.21791 0.75707 0.99448 1.02501 0.92552 0.91886 0.93169 0.91624 0.92166 0.90644 0.91343 0.88307 0.88498 0.76335 0.91496 0.89674 0.91410 0.91730 0.91564 0.91578 0.90349 0.90966 0.91936 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.96 55.43 0.77 -26.29 16 2 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 3 Si 0.89 21.50 24.39 -169.99 -4.15 17.35 16 4 H -0.28 -6.48 6.86 56.52 0.39 -6.10 16 5 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.27 -6.23 6.53 56.52 0.37 -5.86 16 7 C -0.52 -14.09 9.14 -34.44 -0.31 -14.40 16 8 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 9 C 0.01 0.13 1.84 -91.65 -0.17 -0.04 16 10 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 11 C -0.12 -2.44 4.66 -26.69 -0.12 -2.56 16 12 C -0.14 -2.12 6.07 -26.83 -0.16 -2.29 16 13 C 0.11 1.45 6.31 -3.93 -0.02 1.43 16 14 N -0.61 -9.90 2.98 -173.03 -0.52 -10.41 16 15 C 0.51 8.02 7.16 -10.99 -0.08 7.94 16 16 O -0.55 -10.05 11.92 -9.14 -0.11 -10.16 16 17 C -0.17 -1.97 2.98 -27.88 -0.08 -2.05 16 18 C 0.15 1.80 0.98 -89.50 -0.09 1.71 16 19 O -0.56 -7.85 12.89 -49.92 -0.64 -8.49 16 20 C -0.14 -1.78 4.65 -25.03 -0.12 -1.89 16 21 C -0.13 -1.32 6.91 -24.69 -0.17 -1.49 16 22 C -0.12 -1.11 6.83 -25.07 -0.17 -1.28 16 23 C -0.11 -1.11 6.27 -25.62 -0.16 -1.27 16 24 C 0.13 2.52 5.66 -3.71 -0.02 2.50 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 1.00 7.68 -51.93 -0.40 0.60 16 33 H 0.10 0.99 7.95 -51.93 -0.41 0.58 16 34 H 0.39 5.47 6.96 45.56 0.32 5.79 16 35 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 36 H 0.08 1.26 7.17 -51.93 -0.37 0.89 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.80 7.96 -51.93 -0.41 0.39 16 42 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.09 1.88 7.00 -51.93 -0.36 1.52 16 LS Contribution 327.71 15.07 4.94 4.94 Total: -1.00 -30.67 327.71 -8.19 -38.86 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.70 Total: 5.97 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -1.78 Total: -11.76 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.26 Total: -36.71 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.75 Total: -18.65 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.15 Total: 17.35 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.67 -8.19 -38.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.684 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds