Wall clock time and date at job start Tue Mar 31 2020 05:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48499 * 109.47162 * 270.00122 * 3 2 1 5 5 H 1.48497 * 109.47384 * 29.99909 * 3 2 1 6 6 H 1.48500 * 109.47058 * 150.00184 * 3 2 1 7 7 C 1.37873 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99915 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00212 * 179.97438 * 7 2 1 10 10 H 1.08993 * 109.52713 * 59.91707 * 9 7 2 11 11 C 1.53040 * 109.49690 * 299.83470 * 9 7 2 12 12 C 1.53039 * 109.53898 * 178.68019 * 11 9 7 13 13 C 1.52769 * 109.38026 * 61.24573 * 12 11 9 14 14 N 1.46924 * 109.00557 * 305.58622 * 13 12 11 15 15 C 1.34776 * 120.62981 * 233.58771 * 14 13 12 16 16 O 1.21282 * 119.99940 * 179.72426 * 15 14 13 17 17 C 1.50698 * 120.00035 * 359.71541 * 15 14 13 18 18 C 1.53006 * 109.47184 * 180.02562 * 17 15 14 19 19 O 1.42902 * 110.01133 * 64.30061 * 18 17 15 20 20 C 1.54266 * 110.03265 * 302.91449 * 18 17 15 21 21 C 1.54973 * 104.15673 * 217.13614 * 20 18 17 22 22 C 1.54888 * 102.77627 * 37.88686 * 21 20 18 23 23 C 1.53868 * 110.03170 * 185.69380 * 18 17 15 24 24 C 1.46929 * 118.73954 * 53.30950 * 14 13 12 25 25 H 0.97004 * 119.99759 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46573 * 298.70625 * 11 9 7 27 27 H 1.09003 * 109.46205 * 58.67913 * 11 9 7 28 28 H 1.09000 * 109.50218 * 181.31533 * 12 11 9 29 29 H 1.08996 * 109.50189 * 301.38557 * 12 11 9 30 30 H 1.08998 * 109.50768 * 185.70946 * 13 12 11 31 31 H 1.08992 * 109.43427 * 65.41966 * 13 12 11 32 32 H 1.09001 * 109.46665 * 60.00498 * 17 15 14 33 33 H 1.08993 * 109.47304 * 300.00054 * 17 15 14 34 34 H 0.96698 * 114.00657 * 300.69692 * 19 18 17 35 35 H 1.08999 * 110.48405 * 335.78046 * 20 18 17 36 36 H 1.08997 * 110.49029 * 98.42471 * 20 18 17 37 37 H 1.09005 * 110.71533 * 279.57200 * 21 20 18 38 38 H 1.08997 * 110.92008 * 156.29977 * 21 20 18 39 39 H 1.08997 * 110.48272 * 203.40871 * 22 21 20 40 40 H 1.08995 * 110.48469 * 80.76374 * 22 21 20 41 41 H 1.09004 * 110.03298 * 238.57238 * 23 18 17 42 42 H 1.08999 * 110.03614 * 0.02562 * 23 18 17 43 43 H 1.09001 * 109.58590 * 66.43304 * 24 14 13 44 44 H 1.08999 * 109.58821 * 186.71200 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 1 3.8762 -0.6794 0.8877 11 6 4.0218 -0.4761 -1.2526 12 6 5.5519 -0.4467 -1.2377 13 6 6.0865 -1.8778 -1.2491 14 7 5.4860 -2.6218 -0.1335 15 6 6.2629 -3.2721 0.7553 16 8 5.7553 -3.8786 1.6748 17 6 7.7623 -3.2459 0.6065 18 6 8.4012 -4.0558 1.7364 19 8 8.0263 -5.4303 1.6254 20 6 7.9580 -3.4960 3.1039 21 6 9.2189 -3.6296 3.9949 22 6 10.3682 -3.2832 3.0161 23 6 9.9330 -3.9210 1.6806 24 6 4.0228 -2.6382 -0.0016 25 1 -0.4850 0.8401 0.0004 26 1 3.6774 -1.0055 -2.1410 27 1 3.6395 0.5446 -1.2671 28 1 5.9142 0.0852 -2.1175 29 1 5.8973 0.0614 -0.3375 30 1 7.1705 -1.8622 -1.1364 31 1 5.8218 -2.3563 -2.1919 32 1 8.1141 -2.2153 0.6538 33 1 8.0398 -3.6809 -0.3536 34 1 7.0721 -5.5822 1.6646 35 1 7.6656 -2.4501 3.0112 36 1 7.1379 -4.0877 3.5107 37 1 9.3221 -4.6491 4.3667 38 1 9.1882 -2.9199 4.8216 39 1 11.3061 -3.7196 3.3595 40 1 10.4655 -2.2029 2.9091 41 1 10.3905 -4.9042 1.5697 42 1 10.2212 -3.2783 0.8489 43 1 3.5863 -3.1800 -0.8407 44 1 3.7455 -3.1265 0.9326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855255239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:36 Heat of formation + Delta-G solvation = -124.388147 kcal Electronic energy + Delta-G solvation = -23439.904351 eV Core-core repulsion = 20162.269177 eV Total energy + Delta-G solvation = -3277.635173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.59125 -39.81991 -38.24133 -35.69852 -35.37953 -33.62626 -32.48706 -31.51543 -29.65368 -27.64764 -26.69157 -25.61299 -23.21416 -21.99617 -21.67022 -20.67839 -19.90637 -18.85772 -18.13932 -17.60672 -16.97258 -16.77358 -16.38618 -16.07232 -15.83317 -15.42339 -14.95224 -14.87482 -14.50396 -14.26238 -14.16369 -13.94098 -13.56319 -13.47425 -13.03387 -12.91646 -12.86895 -12.47088 -12.36092 -12.10777 -12.03834 -11.97213 -11.87099 -11.54424 -11.52002 -11.43250 -11.25949 -11.07774 -10.79024 -10.70457 -10.59404 -9.54584 -8.33710 -6.39105 1.26327 1.33943 1.44140 1.63200 2.07039 2.29225 3.01343 3.26763 3.47006 3.60986 3.84192 3.87891 4.03146 4.05366 4.23306 4.26795 4.31432 4.35642 4.49849 4.54825 4.56702 4.66028 4.71976 4.74812 4.83270 4.89387 4.91520 4.96479 5.05355 5.07258 5.11035 5.13488 5.17505 5.22403 5.36476 5.41064 5.44443 5.49194 5.63438 5.73568 6.23599 6.51531 6.67523 6.74393 7.20399 7.27015 8.83151 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027170 B = 0.004342 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.287790 B = 6447.501997 C = 6491.319505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.257 1.257 5 H -0.302 1.302 6 H -0.252 1.252 7 C -0.524 4.524 8 H 0.032 0.968 9 C 0.009 3.991 10 H 0.013 0.987 11 C -0.123 4.123 12 C -0.134 4.134 13 C 0.106 3.894 14 N -0.609 5.609 15 C 0.504 3.496 16 O -0.586 6.586 17 C -0.157 4.157 18 C 0.140 3.860 19 O -0.575 6.575 20 C -0.142 4.142 21 C -0.126 4.126 22 C -0.118 4.118 23 C -0.109 4.109 24 C 0.138 3.862 25 H 0.267 0.733 26 H 0.062 0.938 27 H 0.036 0.964 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.380 0.620 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.806 -2.427 -1.429 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.184 4.184 3 Si 0.782 3.218 4 H -0.182 1.182 5 H -0.230 1.230 6 H -0.176 1.176 7 C -0.562 4.562 8 H 0.050 0.950 9 C -0.010 4.010 10 H 0.031 0.969 11 C -0.161 4.161 12 C -0.172 4.172 13 C -0.016 4.016 14 N -0.340 5.340 15 C 0.294 3.706 16 O -0.467 6.467 17 C -0.197 4.197 18 C 0.099 3.901 19 O -0.384 6.384 20 C -0.180 4.180 21 C -0.164 4.164 22 C -0.156 4.156 23 C -0.147 4.147 24 C 0.015 3.985 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.122 0.878 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.102 0.898 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.230 0.770 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.077 0.923 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 25.037 -2.731 -1.028 25.206 hybrid contribution -1.849 0.714 0.296 2.004 sum 23.188 -2.017 -0.732 23.287 Atomic orbital electron populations 1.70055 1.08311 1.28153 1.52388 1.25890 0.95438 1.03150 0.93959 0.85739 0.78785 0.78261 0.78970 1.18236 1.22990 1.17574 1.21247 0.91238 0.93135 1.50630 0.95010 1.19330 0.93590 0.93433 0.94687 0.96886 1.21872 0.96009 0.99111 0.99062 1.21923 0.94542 0.97301 1.03410 1.21958 0.99547 0.91044 0.89033 1.48400 1.06551 1.50697 1.28375 1.21377 0.90728 0.77819 0.80635 1.90615 1.76596 1.45748 1.33758 1.22625 0.89245 1.04884 1.02928 1.21770 0.95451 0.80724 0.92125 1.86383 1.29946 1.25889 1.96160 1.22989 0.98079 1.00599 0.96305 1.22526 0.94508 1.01345 0.97973 1.22371 0.98050 1.01386 0.93769 1.22204 0.90536 1.02385 0.99528 1.21281 0.78965 0.97387 1.00832 0.92457 0.91911 0.94562 0.87778 0.92287 0.86065 0.89846 0.85401 0.85859 0.77006 0.92167 0.92955 0.92176 0.91085 0.90141 0.90100 0.90816 0.88177 0.92315 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 2 C 0.01 0.75 5.45 84.65 0.46 1.21 16 3 Si 0.96 44.55 24.39 68.60 1.67 46.23 16 4 H -0.26 -11.01 6.86 99.48 0.68 -10.33 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.25 -10.99 6.53 99.48 0.65 -10.34 16 7 C -0.52 -30.03 9.14 25.60 0.23 -29.80 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 9 C 0.01 0.42 1.84 -11.46 -0.02 0.40 16 10 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 11 C -0.12 -4.63 4.66 30.62 0.14 -4.49 16 12 C -0.13 -3.43 6.07 30.53 0.19 -3.24 16 13 C 0.11 2.28 6.31 86.22 0.54 2.82 16 14 N -0.61 -18.76 2.98 -819.73 -2.44 -21.20 16 15 C 0.50 15.02 7.16 87.66 0.63 15.64 16 16 O -0.59 -21.94 11.92 11.01 0.13 -21.81 16 17 C -0.16 -3.05 2.98 29.85 0.09 -2.96 16 18 C 0.14 3.07 0.98 -10.07 -0.01 3.06 16 19 O -0.57 -15.54 12.89 -134.93 -1.74 -17.28 16 20 C -0.14 -3.53 4.65 31.70 0.15 -3.39 16 21 C -0.13 -2.45 6.91 31.91 0.22 -2.23 16 22 C -0.12 -1.70 6.83 31.67 0.22 -1.48 16 23 C -0.11 -1.71 6.27 31.32 0.20 -1.52 16 24 C 0.14 5.65 5.66 86.36 0.49 6.14 16 25 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 26 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.04 1.46 3.27 -2.39 -0.01 1.45 16 28 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.12 1.58 5.93 -2.39 -0.01 1.57 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.13 1.81 7.68 -2.39 -0.02 1.79 16 33 H 0.12 1.83 7.95 -2.39 -0.02 1.81 16 34 H 0.38 11.04 6.96 -74.06 -0.52 10.52 16 35 H 0.06 1.54 7.79 -2.39 -0.02 1.52 16 36 H 0.05 1.62 7.17 -2.39 -0.02 1.61 16 37 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.26 7.96 -2.38 -0.02 1.24 16 42 H 0.10 1.04 7.67 -2.39 -0.02 1.02 16 43 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.06 2.60 7.00 -2.39 -0.02 2.59 16 Total: -1.00 -72.50 327.71 1.83 -70.67 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.39 Total: 22.57 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 3.52 Total: -19.82 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -2.14 Total: -80.55 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.61 Total: -39.09 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.67 Total: 46.23 kcal Total: -72.50 1.83 -70.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.723 kcal (2) G-P(sol) polarization free energy of solvation -72.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds