Wall clock time and date at job start Tue Mar 31 2020 07:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47115 * 2 1 4 4 C 1.50694 * 109.47447 * 239.99753 * 2 1 3 5 5 O 1.21286 * 120.00043 * 260.25681 * 4 2 1 6 6 N 1.34776 * 120.00267 * 80.24811 * 4 2 1 7 7 C 1.46926 * 120.63305 * 175.11523 * 6 4 2 8 8 C 1.53196 * 108.77216 * 126.41715 * 7 6 4 9 9 C 1.53039 * 109.31202 * 54.63602 * 8 7 6 10 10 C 1.53041 * 109.54259 * 298.63582 * 9 8 7 11 11 H 1.09008 * 109.49414 * 301.38517 * 10 9 8 12 12 C 1.50699 * 109.50229 * 181.31691 * 10 9 8 13 13 H 1.08001 * 119.99879 * 245.39639 * 12 10 9 14 14 C 1.37875 * 119.99785 * 65.11604 * 12 10 9 15 15 N 1.31515 * 120.00184 * 355.59233 * 14 12 10 16 16 Si 1.86799 * 119.99801 * 175.59494 * 14 12 10 17 17 H 1.48501 * 109.47388 * 94.99576 * 16 14 12 18 18 H 1.48504 * 109.46932 * 214.99997 * 16 14 12 19 19 H 1.48504 * 109.47225 * 334.99659 * 16 14 12 20 20 C 1.46927 * 120.62715 * 355.14916 * 6 4 2 21 21 C 1.53005 * 109.46989 * 119.99614 * 2 1 3 22 22 C 1.53783 * 113.61695 * 282.62954 * 21 2 1 23 23 C 1.53950 * 87.01805 * 220.04944 * 22 21 2 24 24 C 1.53776 * 87.11525 * 25.36311 * 23 22 21 25 25 H 1.09001 * 109.47054 * 185.01644 * 1 2 3 26 26 H 1.08998 * 109.46798 * 305.01817 * 1 2 3 27 27 H 1.08998 * 109.46719 * 65.01720 * 1 2 3 28 28 H 0.96705 * 114.00027 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.58414 * 6.63765 * 7 6 4 30 30 H 1.08995 * 109.59212 * 246.20621 * 7 6 4 31 31 H 1.08997 * 109.49782 * 294.68654 * 8 7 6 32 32 H 1.08999 * 109.52371 * 174.60640 * 8 7 6 33 33 H 1.09004 * 109.46181 * 178.61452 * 9 8 7 34 34 H 1.09000 * 109.45773 * 58.65525 * 9 8 7 35 35 H 0.97002 * 120.00125 * 179.97438 * 15 14 12 36 36 H 1.08996 * 109.58929 * 113.79313 * 20 6 4 37 37 H 1.08998 * 109.58648 * 353.36754 * 20 6 4 38 38 H 1.09000 * 112.84756 * 53.82748 * 21 2 1 39 39 H 1.09004 * 113.61009 * 334.56594 * 22 21 2 40 40 H 1.08997 * 113.61159 * 105.46855 * 22 21 2 41 41 H 1.09007 * 113.53790 * 270.80759 * 23 22 21 42 42 H 1.09005 * 113.74292 * 139.94650 * 23 22 21 43 43 H 1.09002 * 113.60908 * 220.09336 * 24 23 22 44 44 H 1.08998 * 113.69327 * 89.19878 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.4022 -1.8632 -1.1565 6 7 2.0707 -0.0649 -2.4129 7 6 2.6563 -0.7070 -3.5976 8 6 1.6340 -0.6635 -4.7378 9 6 1.1878 0.7830 -4.9627 10 6 0.5187 1.3155 -3.6935 11 1 -0.3351 0.6866 -3.4411 12 6 0.0508 2.7290 -3.9266 13 1 0.4957 3.5431 -3.3737 14 6 -0.9410 2.9834 -4.8498 15 7 -1.4181 2.0056 -5.5888 16 14 -1.6072 4.7169 -5.0511 17 1 -0.8912 5.3967 -6.1604 18 1 -3.0582 4.6566 -5.3619 19 1 -1.4021 5.4755 -3.7911 20 6 1.5283 1.2945 -2.5415 21 6 2.0400 -0.7212 1.2493 22 6 1.9549 0.1278 2.5287 23 6 3.3260 -0.4577 2.9123 24 6 3.5687 -0.6708 1.4088 25 1 -0.3633 -1.0237 0.0899 26 1 -0.3633 0.5897 0.8416 27 1 -0.3633 0.4340 -0.9315 28 1 2.9704 1.4237 0.0004 29 1 2.9028 -1.7434 -3.3672 30 1 3.5582 -0.1721 -3.8950 31 1 0.7701 -1.2740 -4.4752 32 1 2.0889 -1.0500 -5.6498 33 1 0.4788 0.8200 -5.7898 34 1 2.0558 1.3978 -5.2009 35 1 -2.1162 2.1846 -6.2381 36 1 2.3383 1.9926 -2.7527 37 1 1.0307 1.5786 -1.6143 38 1 1.6221 -1.7217 1.3607 39 1 1.9754 1.2016 2.3422 40 1 1.1485 -0.1712 3.1983 41 1 3.2596 -1.3860 3.4798 42 1 4.0019 0.2677 3.3652 43 1 4.0633 -1.6138 1.1758 44 1 4.0314 0.1833 0.9144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:49 Heat of formation + Delta-G solvation = -73.284348 kcal Electronic energy + Delta-G solvation = -24003.575136 eV Core-core repulsion = 20728.155989 eV Total energy + Delta-G solvation = -3275.419146 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.68609 -38.55771 -36.64769 -35.91987 -33.24969 -31.72794 -30.98751 -29.98967 -26.12820 -25.40848 -25.12309 -24.72377 -22.50296 -21.38238 -19.98556 -19.23567 -18.63344 -17.54174 -16.51581 -15.98602 -15.70287 -15.16476 -14.89849 -14.56908 -13.94319 -13.70429 -13.27499 -13.07295 -12.86320 -12.67666 -12.54878 -12.27657 -12.13139 -11.91856 -11.89129 -11.84253 -11.57831 -11.14453 -11.00270 -10.77857 -10.70033 -10.56881 -10.35859 -10.20769 -9.97620 -9.91370 -9.71544 -9.51659 -8.90226 -8.73866 -8.37479 -7.87111 -6.03659 -4.10231 2.94295 3.27970 3.35746 3.38910 3.49719 4.23666 4.40409 4.52823 4.60125 4.69272 4.79606 5.06539 5.21885 5.26725 5.40549 5.62544 5.66863 5.72890 5.75556 5.78321 5.87618 5.92025 5.94142 5.98599 6.02780 6.10070 6.21407 6.33205 6.37303 6.41884 6.49729 6.56973 6.71823 6.86050 6.99887 7.17489 7.36973 7.56717 7.67974 7.89774 7.97238 8.08984 8.36301 8.60891 8.94330 9.54924 11.02531 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022137 B = 0.005350 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.542646 B = 5232.722831 C = 6052.249239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.132 3.868 3 O -0.536 6.536 4 C 0.488 3.512 5 O -0.558 6.558 6 N -0.592 5.592 7 C 0.111 3.889 8 C -0.133 4.133 9 C -0.111 4.111 10 C 0.038 3.962 11 H 0.029 0.971 12 C -0.514 4.514 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.890 3.110 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.100 3.900 21 C -0.117 4.117 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.135 4.135 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.372 0.628 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.035 0.965 35 H 0.260 0.740 36 H 0.052 0.948 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.437 -3.771 11.727 14.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.088 3.912 3 O -0.342 6.342 4 C 0.275 3.725 5 O -0.438 6.438 6 N -0.323 5.323 7 C -0.012 4.012 8 C -0.171 4.171 9 C -0.149 4.149 10 C 0.019 3.981 11 H 0.048 0.952 12 C -0.552 4.552 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.020 4.020 21 C -0.136 4.136 22 C -0.169 4.169 23 C -0.179 4.179 24 C -0.172 4.172 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.221 0.779 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.861 -4.262 11.607 14.141 hybrid contribution 0.175 0.787 -0.464 0.930 sum 7.037 -3.476 11.144 13.630 Atomic orbital electron populations 1.21840 0.90574 1.02872 1.04654 1.21195 0.96477 0.82233 0.91277 1.86668 1.26588 1.24608 1.96368 1.21293 0.78735 0.87028 0.85439 1.90617 1.49879 1.17308 1.85955 1.48382 1.57770 1.17939 1.08206 1.21591 0.95846 0.98074 0.85663 1.21983 0.98146 1.00800 0.96220 1.21634 0.99569 0.90863 1.02819 1.19016 0.92591 0.96732 0.89762 0.95246 1.21057 1.19703 0.92329 1.22128 0.92425 1.24942 0.96451 0.96882 0.95490 1.69908 1.28188 1.31416 1.23108 0.86608 0.78253 0.84898 0.78415 1.20839 1.21239 1.19763 1.22544 0.97439 0.79174 1.02871 1.22990 0.96713 1.00146 0.93724 1.22977 0.97110 1.00657 0.96115 1.22817 0.97723 1.00976 0.96344 1.22856 0.96053 1.02040 0.96248 0.91047 0.90764 0.90057 0.77926 0.90472 0.92394 0.92529 0.92684 0.89257 0.94666 0.93004 0.92965 0.87751 0.88070 0.88903 0.91635 0.90435 0.91588 0.91055 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.44 37.16 0.31 -1.79 16 2 C 0.13 1.93 0.52 -91.77 -0.05 1.88 16 3 O -0.54 -7.45 8.65 -35.23 -0.30 -7.75 16 4 C 0.49 8.66 6.30 -10.99 -0.07 8.59 16 5 O -0.56 -11.06 15.38 5.55 0.09 -10.98 16 6 N -0.59 -10.94 2.97 -172.77 -0.51 -11.45 16 7 C 0.11 1.99 6.44 -3.71 -0.02 1.97 16 8 C -0.13 -2.57 6.08 -26.61 -0.16 -2.74 16 9 C -0.11 -2.51 5.01 -26.69 -0.13 -2.64 16 10 C 0.04 0.90 2.20 -91.65 -0.20 0.70 16 11 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 12 C -0.51 -13.39 8.50 -34.44 -0.29 -13.68 16 13 H 0.06 1.48 7.75 -52.49 -0.41 1.07 16 14 C 0.06 1.71 5.36 -17.82 -0.10 1.61 16 15 N -0.89 -24.65 11.53 55.43 0.64 -24.02 16 16 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 C 0.10 1.99 4.30 -3.71 -0.02 1.97 16 21 C -0.12 -1.47 2.44 -89.80 -0.22 -1.68 16 22 C -0.13 -1.37 7.44 -25.83 -0.19 -1.56 16 23 C -0.14 -1.36 8.09 -25.83 -0.21 -1.56 16 24 C -0.13 -1.54 6.91 -25.92 -0.18 -1.72 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.41 6.62 -51.93 -0.34 1.06 16 28 H 0.37 4.27 7.22 45.56 0.33 4.60 16 29 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 2.29 6.29 -51.93 -0.33 1.96 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.10 2.02 3.76 -51.93 -0.20 1.83 16 38 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.09 1.00 7.14 -51.93 -0.37 0.63 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.80 6.43 -51.93 -0.33 0.46 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -28.65 333.76 -8.25 -36.91 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.64 Total: 7.29 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -1.53 Total: -10.66 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.13 Total: -35.47 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.22 Total: -18.73 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.65 -8.25 -36.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.375 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds