Wall clock time and date at job start Tue Mar 31 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00340 * 2 1 4 4 H 1.48496 * 109.47597 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46799 * 299.99818 * 3 2 1 6 6 H 1.48504 * 109.47182 * 59.99179 * 3 2 1 7 7 C 1.37881 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99928 * 269.99557 * 10 9 7 12 12 C 1.52998 * 109.47310 * 270.00532 * 11 10 9 13 13 C 1.52997 * 117.49893 * 243.62139 * 12 11 10 14 14 C 1.52993 * 60.00107 * 252.50840 * 13 12 11 15 15 C 1.34777 * 120.00199 * 90.00203 * 10 9 7 16 16 O 1.21513 * 119.99898 * 359.97438 * 15 10 9 17 17 O 1.34638 * 119.99834 * 180.27541 * 15 10 9 18 18 C 1.45201 * 116.99819 * 179.72501 * 17 15 10 19 19 C 1.52999 * 109.46691 * 269.99720 * 18 17 15 20 20 C 1.53009 * 109.46973 * 180.02562 * 19 18 17 21 21 C 1.52998 * 109.46999 * 60.00072 * 20 19 18 22 22 C 1.53002 * 109.46872 * 299.99948 * 21 20 19 23 23 C 1.52998 * 109.47110 * 149.99897 * 18 17 15 24 24 H 0.96999 * 119.99771 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47153 * 60.00225 * 9 7 2 26 26 H 1.09005 * 109.46937 * 299.99970 * 9 7 2 27 27 H 1.09002 * 109.46502 * 29.99971 * 11 10 9 28 28 H 1.09001 * 109.46919 * 150.00120 * 11 10 9 29 29 H 1.08997 * 115.55022 * 29.32535 * 12 11 10 30 30 H 1.09007 * 117.49720 * 0.02562 * 13 12 11 31 31 H 1.08997 * 117.50350 * 145.01417 * 13 12 11 32 32 H 1.08996 * 117.50082 * 252.50857 * 14 13 12 33 33 H 1.09000 * 117.49899 * 107.48584 * 14 13 12 34 34 H 1.08997 * 109.47377 * 29.99779 * 18 17 15 35 35 H 1.08999 * 109.47382 * 299.99599 * 19 18 17 36 36 H 1.08993 * 109.47361 * 60.00057 * 19 18 17 37 37 H 1.08999 * 109.46709 * 299.99974 * 20 19 18 38 38 H 1.09000 * 109.47200 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.47075 * 179.97438 * 21 20 19 40 40 H 1.08997 * 109.47097 * 59.99988 * 21 20 19 41 41 H 1.08997 * 109.47292 * 299.99920 * 22 21 20 42 42 H 1.09005 * 109.46751 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.46878 * 299.99593 * 23 18 17 44 44 H 1.08997 * 109.47097 * 59.99710 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.6799 -4.1701 -1.2664 12 6 1.7495 -5.3014 -1.7083 13 6 2.3415 -6.7095 -1.7956 14 6 2.0109 -5.9381 -3.0747 15 6 2.6400 -4.1244 1.1695 16 8 2.2447 -3.6619 2.2213 17 8 3.5192 -5.1441 1.1706 18 6 3.9510 -5.6408 2.4649 19 6 5.1952 -4.8733 2.9164 20 6 5.6506 -5.3971 4.2799 21 6 5.9824 -6.8866 4.1692 22 6 4.7382 -7.6540 3.7177 23 6 4.2826 -7.1303 2.3547 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.6881 -3.3887 -2.0264 28 1 3.6893 -4.5600 -1.1351 29 1 0.7124 -5.2103 -1.3856 30 1 3.3937 -6.8300 -1.5377 31 1 1.6939 -7.5451 -1.5301 32 1 1.1457 -6.2661 -3.6509 33 1 2.8457 -5.5509 -3.6589 34 1 3.1525 -5.4992 3.1932 35 1 5.9937 -5.0149 2.1881 36 1 4.9589 -3.8122 2.9948 37 1 4.8522 -5.2559 5.0085 38 1 6.5372 -4.8507 4.6014 39 1 6.3073 -7.2596 5.1405 40 1 6.7807 -7.0278 3.4406 41 1 3.9399 -7.5128 4.4462 42 1 4.9747 -8.7151 3.6383 43 1 3.3962 -7.6771 2.0331 44 1 5.0811 -7.2719 1.6264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866733668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:42 Heat of formation + Delta-G solvation = -80.661819 kcal Electronic energy + Delta-G solvation = -23068.893900 eV Core-core repulsion = 19793.154842 eV Total energy + Delta-G solvation = -3275.739058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.99035 -38.22316 -37.16477 -35.53369 -34.33932 -32.50060 -30.82941 -29.91254 -27.80900 -26.09023 -23.50592 -22.64879 -22.16993 -22.04365 -20.62556 -19.85409 -19.44865 -17.41535 -16.55022 -16.42554 -15.48140 -15.11663 -15.04628 -14.52481 -14.27115 -14.18577 -13.87820 -13.71808 -13.00469 -12.80350 -12.55872 -12.28479 -12.21316 -12.08991 -11.48105 -11.32638 -11.21513 -11.20218 -11.06792 -10.88298 -10.73324 -10.71041 -10.58178 -10.31932 -10.27993 -10.06113 -9.83360 -9.69714 -9.60295 -9.38281 -8.43863 -7.73739 -6.04815 -4.09267 2.93952 3.30434 3.37907 3.42759 3.72010 4.02544 4.41301 4.54871 4.67287 4.70005 4.90535 5.04578 5.17416 5.17484 5.18797 5.29754 5.30900 5.42076 5.42716 5.44300 5.57737 5.69386 5.73231 5.80044 5.92130 5.95566 6.01643 6.03975 6.07801 6.09093 6.16578 6.17876 6.29956 6.31997 6.37444 6.57977 6.84671 7.17043 7.45996 7.51929 7.91808 8.21329 8.41042 8.91229 9.24431 9.56369 11.03337 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013739 B = 0.005499 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.489207 B = 5090.891210 C = 6640.877341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.259 3.741 10 N -0.575 5.575 11 C 0.149 3.851 12 C -0.163 4.163 13 C -0.176 4.176 14 C -0.179 4.179 15 C 0.641 3.359 16 O -0.572 6.572 17 O -0.371 6.371 18 C 0.109 3.891 19 C -0.137 4.137 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.113 4.113 24 H 0.263 0.737 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.405 -15.774 1.201 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.566 4.566 8 H 0.077 0.923 9 C 0.142 3.858 10 N -0.313 5.313 11 C 0.025 3.975 12 C -0.183 4.183 13 C -0.213 4.213 14 C -0.217 4.217 15 C 0.394 3.606 16 O -0.461 6.461 17 O -0.286 6.286 18 C 0.053 3.947 19 C -0.174 4.174 20 C -0.153 4.153 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.151 4.151 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.146 -15.519 1.571 18.082 hybrid contribution 0.327 1.033 0.004 1.084 sum 9.472 -14.486 1.575 17.379 Atomic orbital electron populations 1.69941 1.05973 1.26954 1.50473 1.24917 0.94877 0.99181 0.95027 0.86433 0.80016 0.83326 0.77593 1.19799 1.20922 1.20875 1.21489 0.93495 0.90580 1.51043 0.92308 1.19358 0.86656 0.81052 0.98775 1.47217 1.46973 1.35252 1.01849 1.20973 0.95579 0.94361 0.86615 1.22873 1.01174 0.94322 0.99905 1.22955 1.01614 0.95049 1.01694 1.22894 1.03250 1.04757 0.90764 1.18154 0.78389 0.78837 0.85172 1.90935 1.61605 1.62902 1.30620 1.86268 1.58669 1.49112 1.34597 1.22459 0.96405 0.92691 0.83169 1.21945 0.97460 1.00903 0.97123 1.21484 1.01319 0.95558 0.96945 1.21591 0.97787 0.95381 1.01175 1.21491 0.98031 0.99397 0.96376 1.21572 1.02045 0.93556 0.97941 0.92733 0.94245 0.93683 0.89603 0.90940 0.87689 0.88792 0.89526 0.89143 0.88866 0.89933 0.91406 0.90894 0.91627 0.91610 0.91929 0.91855 0.91653 0.91392 0.91206 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.53 -15.04 9.39 -34.44 -0.32 -15.37 16 8 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 9 C 0.26 6.85 5.16 -5.20 -0.03 6.83 16 10 N -0.57 -12.86 2.46 -180.86 -0.44 -13.30 16 11 C 0.15 2.66 5.70 -4.04 -0.02 2.63 16 12 C -0.16 -2.52 6.01 -90.62 -0.54 -3.06 16 13 C -0.18 -2.25 10.18 -26.74 -0.27 -2.52 16 14 C -0.18 -2.21 10.25 -26.74 -0.27 -2.49 16 15 C 0.64 14.50 8.37 54.06 0.45 14.95 16 16 O -0.57 -14.92 15.18 -19.28 -0.29 -15.21 16 17 O -0.37 -6.86 8.70 -40.32 -0.35 -7.21 16 18 C 0.11 1.68 2.46 -26.73 -0.07 1.61 16 19 C -0.14 -1.94 5.56 -26.73 -0.15 -2.09 16 20 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 21 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 22 C -0.12 -1.09 5.92 -26.76 -0.16 -1.24 16 23 C -0.11 -1.31 5.58 -26.76 -0.15 -1.46 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.04 1.04 8.07 -51.93 -0.42 0.62 16 26 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 27 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 28 H 0.07 1.20 7.10 -51.93 -0.37 0.83 16 29 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 30 H 0.09 1.16 8.03 -51.92 -0.42 0.75 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.42 7.16 -51.93 -0.37 1.05 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 358.33 15.07 5.40 5.40 Total: -1.00 -31.78 358.33 -9.77 -41.54 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.84 Total: 0.90 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -1.95 Total: -3.26 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.29 Total: -39.09 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.64 Total: -22.42 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.78 -9.77 -41.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866733668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.118 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds