Wall clock time and date at job start Tue Mar 31 2020 06:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48502 * 109.47043 * 90.00086 * 3 2 1 5 5 H 1.48503 * 109.47051 * 210.00034 * 3 2 1 6 6 H 1.48496 * 109.46998 * 329.99980 * 3 2 1 7 7 C 1.37876 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.53001 * 115.54995 * 203.58698 * 9 7 2 11 11 N 1.46899 * 109.47094 * 300.16294 * 10 9 7 12 12 C 1.46852 * 111.00008 * 327.95967 * 11 10 9 13 13 C 1.53037 * 109.52336 * 185.83661 * 12 11 10 14 14 C 1.53113 * 109.28354 * 300.82562 * 13 12 11 15 15 C 1.53127 * 109.15841 * 57.65298 * 14 13 12 16 16 C 1.46844 * 111.00462 * 92.17440 * 11 10 9 17 17 H 1.09004 * 109.45889 * 294.16961 * 16 11 10 18 18 C 1.53000 * 109.46133 * 54.14257 * 16 11 10 19 19 O 1.43754 * 109.63241 * 287.66632 * 18 16 11 20 20 C 1.44782 * 104.81758 * 215.80573 * 19 18 16 21 21 C 1.54920 * 101.71931 * 36.10816 * 20 19 18 22 22 O 1.43373 * 109.63132 * 168.30648 * 18 16 11 23 23 C 1.52997 * 117.50032 * 57.91667 * 9 7 2 24 24 C 1.52998 * 117.49686 * 349.25535 * 9 7 2 25 25 H 0.96995 * 119.99543 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47089 * 60.15901 * 10 9 7 27 27 H 1.09004 * 109.47302 * 180.16245 * 10 9 7 28 28 H 1.08996 * 109.46523 * 305.85945 * 12 11 10 29 29 H 1.09004 * 109.45703 * 65.82847 * 12 11 10 30 30 H 1.09001 * 109.50195 * 180.88242 * 13 12 11 31 31 H 1.09002 * 109.49926 * 60.77180 * 13 12 11 32 32 H 1.09000 * 109.52367 * 297.75079 * 14 13 12 33 33 H 1.08993 * 109.52397 * 177.55841 * 14 13 12 34 34 H 1.09005 * 109.49828 * 182.40694 * 15 14 13 35 35 H 1.08999 * 109.53306 * 62.31026 * 15 14 13 36 36 H 1.08999 * 109.62977 * 47.90870 * 18 16 11 37 37 H 1.08993 * 110.97997 * 277.99900 * 20 19 18 38 38 H 1.09006 * 110.97958 * 154.21197 * 20 19 18 39 39 H 1.08998 * 110.69337 * 206.03995 * 21 20 19 40 40 H 1.08999 * 110.84247 * 82.90227 * 21 20 19 41 41 H 1.08998 * 117.49856 * 359.97438 * 23 9 7 42 42 H 1.08998 * 117.50127 * 145.02318 * 23 9 7 43 43 H 1.09004 * 117.49501 * 214.97735 * 24 9 7 44 44 H 1.08994 * 117.50136 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.0163 -3.7031 0.5534 11 7 3.2287 -3.9220 -0.2466 12 6 3.0134 -3.5320 -1.6459 13 6 4.2427 -3.9076 -2.4764 14 6 5.4728 -3.1923 -1.9111 15 6 5.6463 -3.5781 -0.4395 16 6 4.3765 -3.2119 0.3320 17 1 4.2090 -2.1368 0.2664 18 6 4.5377 -3.6140 1.7994 19 8 3.4870 -3.0210 2.5810 20 6 4.1076 -2.6927 3.8472 21 6 5.5276 -2.2643 3.4000 22 8 5.8001 -3.1451 2.2914 23 6 0.2739 -2.7508 -1.1496 24 6 -0.2571 -2.4441 0.2530 25 1 -0.4849 0.8400 0.0004 26 1 2.2945 -3.5120 1.5898 27 1 1.3838 -4.5895 0.5046 28 1 2.1384 -4.0509 -2.0371 29 1 2.8524 -2.4554 -1.7021 30 1 4.0889 -3.6039 -3.5119 31 1 4.3963 -4.9859 -2.4319 32 1 5.3358 -2.1139 -1.9912 33 1 6.3579 -3.4907 -2.4728 34 1 6.4955 -3.0387 -0.0196 35 1 5.8225 -4.6510 -0.3623 36 1 4.4898 -4.6993 1.8891 37 1 4.1503 -3.5655 4.4987 38 1 3.5869 -1.8686 4.3350 39 1 6.2480 -2.4213 4.2028 40 1 5.5347 -1.2237 3.0760 41 1 0.1758 -1.9722 -1.9061 42 1 0.1760 -3.7741 -1.5121 43 1 -0.7040 -3.2659 0.8126 44 1 -0.7041 -1.4641 0.4194 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878048256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:03 Heat of formation + Delta-G solvation = -29.057798 kcal Electronic energy + Delta-G solvation = -24864.610662 eV Core-core repulsion = 21591.109322 eV Total energy + Delta-G solvation = -3273.501339 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.35722 -38.46384 -36.01922 -34.76164 -32.60071 -31.71111 -30.93538 -28.89604 -26.27577 -25.69167 -24.30473 -23.11345 -22.13072 -21.18919 -20.28443 -19.65232 -18.30245 -17.21122 -16.49747 -16.24086 -15.36046 -14.95771 -14.73259 -14.49149 -14.09444 -13.71788 -13.42068 -13.26609 -12.92258 -12.82250 -12.65285 -12.34152 -12.08151 -11.83803 -11.43930 -11.19905 -11.08681 -10.87339 -10.68713 -10.45706 -10.31467 -10.19960 -10.01896 -9.87148 -9.72989 -9.67865 -9.20108 -9.06802 -8.78104 -8.30920 -7.97181 -7.12600 -5.68635 -4.05186 3.23934 3.31676 3.34029 3.67537 4.16263 4.35240 4.77020 4.86580 5.07022 5.14619 5.21663 5.30456 5.41779 5.47891 5.59344 5.65707 5.75197 5.83171 5.88091 6.06213 6.09602 6.13442 6.22857 6.37625 6.40787 6.45104 6.48953 6.59260 6.65130 6.70574 6.81777 6.89178 7.02253 7.18446 7.21364 7.31730 7.41639 7.58638 7.72437 7.90521 8.01518 8.12466 8.38907 8.89090 8.97481 9.62257 10.97020 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.008922 C = 0.007509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.394778 B = 3137.495638 C = 3727.837371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.286 1.286 7 C -0.458 4.458 8 H 0.065 0.935 9 C -0.003 4.003 10 C 0.065 3.935 11 N -0.523 5.523 12 C 0.052 3.948 13 C -0.119 4.119 14 C -0.117 4.117 15 C -0.101 4.101 16 C 0.062 3.938 17 H 0.079 0.921 18 C 0.241 3.759 19 O -0.344 6.344 20 C 0.004 3.996 21 C 0.023 3.977 22 O -0.385 6.385 23 C -0.203 4.203 24 C -0.214 4.214 25 H 0.256 0.744 26 H 0.107 0.893 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.027 0.973 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.418 -5.244 3.547 11.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.200 1.200 6 H -0.212 1.212 7 C -0.495 4.495 8 H 0.083 0.917 9 C -0.005 4.005 10 C -0.061 4.061 11 N -0.248 5.248 12 C -0.075 4.075 13 C -0.156 4.156 14 C -0.155 4.155 15 C -0.139 4.139 16 C -0.047 4.047 17 H 0.096 0.904 18 C 0.145 3.855 19 O -0.264 6.264 20 C -0.072 4.072 21 C -0.054 4.054 22 O -0.306 6.306 23 C -0.241 4.241 24 C -0.252 4.252 25 H 0.068 0.932 26 H 0.123 0.877 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 9.390 -5.620 3.399 11.459 hybrid contribution 0.055 1.602 0.072 1.604 sum 9.445 -4.018 3.471 10.836 Atomic orbital electron populations 1.69254 1.05654 1.24530 1.52149 1.25053 0.94756 0.99131 0.95026 0.86600 0.79811 0.83578 0.78084 1.20713 1.19976 1.21224 1.20751 0.92480 0.88963 1.47294 0.91698 1.19462 0.89444 0.93624 0.97941 1.22459 0.89641 0.95311 0.98687 1.62272 1.04274 1.55613 1.02684 1.22232 0.95894 1.02127 0.87281 1.21662 0.95544 0.99999 0.98439 1.21535 0.97729 1.00493 0.95755 1.21444 0.96493 1.01231 0.94771 1.22251 0.92127 0.99766 0.90594 0.90373 1.24038 0.74098 0.96048 0.91266 1.89449 1.31201 1.81199 1.24578 1.24420 0.92789 1.00953 0.89068 1.24119 0.96787 0.95339 0.89128 1.88825 1.28712 1.64213 1.48819 1.22701 1.11540 0.96914 0.92908 1.24484 0.99438 1.05046 0.96240 0.93222 0.87665 0.93833 0.91375 0.90717 0.92477 0.92346 0.92205 0.92720 0.91581 0.92015 0.89953 0.91348 0.87750 0.88967 0.90796 0.90938 0.93707 0.95404 0.80783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.00 9.26 55.43 0.51 -23.49 16 2 C 0.06 1.57 5.39 -17.82 -0.10 1.48 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.46 -11.97 7.13 -34.44 -0.25 -12.22 16 8 H 0.07 1.70 4.33 -52.49 -0.23 1.47 16 9 C 0.00 -0.08 1.33 -155.66 -0.21 -0.29 16 10 C 0.07 1.43 5.44 -3.82 -0.02 1.41 16 11 N -0.52 -10.35 4.69 -226.69 -1.06 -11.42 16 12 C 0.05 1.03 3.96 -3.83 -0.02 1.01 16 13 C -0.12 -1.93 6.09 -26.65 -0.16 -2.09 16 14 C -0.12 -1.83 6.00 -26.61 -0.16 -1.99 16 15 C -0.10 -1.64 5.07 -26.65 -0.14 -1.78 16 16 C 0.06 1.15 1.84 -67.73 -0.12 1.03 16 17 H 0.08 1.72 4.88 -51.93 -0.25 1.47 16 18 C 0.24 4.16 3.41 37.16 0.13 4.29 16 19 O -0.34 -6.33 7.92 -59.04 -0.47 -6.79 16 20 C 0.00 0.05 7.95 38.17 0.30 0.35 16 21 C 0.02 0.30 8.07 38.17 0.31 0.61 16 22 O -0.39 -6.12 10.10 -59.04 -0.60 -6.72 16 23 C -0.20 -4.99 7.73 -26.69 -0.21 -5.19 16 24 C -0.21 -5.52 9.33 -26.69 -0.25 -5.77 16 25 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 26 H 0.11 2.35 3.53 -55.95 -0.20 2.15 16 27 H 0.04 0.96 8.11 -51.93 -0.42 0.53 16 28 H 0.07 1.38 6.44 -51.93 -0.33 1.05 16 29 H 0.07 1.70 5.29 -51.93 -0.27 1.43 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.04 7.47 -51.93 -0.39 0.65 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 42 H 0.04 1.03 7.45 -51.93 -0.39 0.64 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.18 4.90 4.46 -75.88 -0.34 4.56 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -27.89 319.57 -9.73 -37.62 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.03 Total: 9.31 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -0.88 Total: -19.15 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.55 Total: -34.91 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -1.06 Total: -13.51 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.89 -9.73 -37.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878048256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.567 kcal (2) G-P(sol) polarization free energy of solvation -27.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds