Wall clock time and date at job start Tue Mar 31 2020 06:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48502 * 109.47043 * 90.00086 * 3 2 1 5 5 H 1.48503 * 109.47051 * 210.00034 * 3 2 1 6 6 H 1.48496 * 109.46998 * 329.99980 * 3 2 1 7 7 C 1.37876 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.53001 * 115.54995 * 203.58698 * 9 7 2 11 11 N 1.46899 * 109.47094 * 300.16294 * 10 9 7 12 12 C 1.46852 * 111.00008 * 327.95967 * 11 10 9 13 13 C 1.53037 * 109.52336 * 185.83661 * 12 11 10 14 14 C 1.53113 * 109.28354 * 300.82562 * 13 12 11 15 15 C 1.53127 * 109.15841 * 57.65298 * 14 13 12 16 16 C 1.46844 * 111.00462 * 92.17440 * 11 10 9 17 17 H 1.09004 * 109.45889 * 294.16961 * 16 11 10 18 18 C 1.53000 * 109.46133 * 54.14257 * 16 11 10 19 19 O 1.43754 * 109.63241 * 287.66632 * 18 16 11 20 20 C 1.44782 * 104.81758 * 215.80573 * 19 18 16 21 21 C 1.54920 * 101.71931 * 36.10816 * 20 19 18 22 22 O 1.43373 * 109.63132 * 168.30648 * 18 16 11 23 23 C 1.52997 * 117.50032 * 57.91667 * 9 7 2 24 24 C 1.52998 * 117.49686 * 349.25535 * 9 7 2 25 25 H 0.96995 * 119.99543 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47089 * 60.15901 * 10 9 7 27 27 H 1.09004 * 109.47302 * 180.16245 * 10 9 7 28 28 H 1.08996 * 109.46523 * 305.85945 * 12 11 10 29 29 H 1.09004 * 109.45703 * 65.82847 * 12 11 10 30 30 H 1.09001 * 109.50195 * 180.88242 * 13 12 11 31 31 H 1.09002 * 109.49926 * 60.77180 * 13 12 11 32 32 H 1.09000 * 109.52367 * 297.75079 * 14 13 12 33 33 H 1.08993 * 109.52397 * 177.55841 * 14 13 12 34 34 H 1.09005 * 109.49828 * 182.40694 * 15 14 13 35 35 H 1.08999 * 109.53306 * 62.31026 * 15 14 13 36 36 H 1.08999 * 109.62977 * 47.90870 * 18 16 11 37 37 H 1.08993 * 110.97997 * 277.99900 * 20 19 18 38 38 H 1.09006 * 110.97958 * 154.21197 * 20 19 18 39 39 H 1.08998 * 110.69337 * 206.03995 * 21 20 19 40 40 H 1.08999 * 110.84247 * 82.90227 * 21 20 19 41 41 H 1.08998 * 117.49856 * 359.97438 * 23 9 7 42 42 H 1.08998 * 117.50127 * 145.02318 * 23 9 7 43 43 H 1.09004 * 117.49501 * 214.97735 * 24 9 7 44 44 H 1.08994 * 117.50136 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.0163 -3.7031 0.5534 11 7 3.2287 -3.9220 -0.2466 12 6 3.0134 -3.5320 -1.6459 13 6 4.2427 -3.9076 -2.4764 14 6 5.4728 -3.1923 -1.9111 15 6 5.6463 -3.5781 -0.4395 16 6 4.3765 -3.2119 0.3320 17 1 4.2090 -2.1368 0.2664 18 6 4.5377 -3.6140 1.7994 19 8 3.4870 -3.0210 2.5810 20 6 4.1076 -2.6927 3.8472 21 6 5.5276 -2.2643 3.4000 22 8 5.8001 -3.1451 2.2914 23 6 0.2739 -2.7508 -1.1496 24 6 -0.2571 -2.4441 0.2530 25 1 -0.4849 0.8400 0.0004 26 1 2.2945 -3.5120 1.5898 27 1 1.3838 -4.5895 0.5046 28 1 2.1384 -4.0509 -2.0371 29 1 2.8524 -2.4554 -1.7021 30 1 4.0889 -3.6039 -3.5119 31 1 4.3963 -4.9859 -2.4319 32 1 5.3358 -2.1139 -1.9912 33 1 6.3579 -3.4907 -2.4728 34 1 6.4955 -3.0387 -0.0196 35 1 5.8225 -4.6510 -0.3623 36 1 4.4898 -4.6993 1.8891 37 1 4.1503 -3.5655 4.4987 38 1 3.5869 -1.8686 4.3350 39 1 6.2480 -2.4213 4.2028 40 1 5.5347 -1.2237 3.0760 41 1 0.1758 -1.9722 -1.9061 42 1 0.1760 -3.7741 -1.5121 43 1 -0.7040 -3.2659 0.8126 44 1 -0.7041 -1.4641 0.4194 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878048256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:02 Heat of formation + Delta-G solvation = -46.133799 kcal Electronic energy + Delta-G solvation = -24865.351132 eV Core-core repulsion = 21591.109322 eV Total energy + Delta-G solvation = -3274.241810 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68086 -39.99593 -37.77395 -36.04889 -34.23395 -33.40724 -32.49226 -30.08954 -28.07167 -27.53335 -25.67485 -24.29952 -23.62032 -22.84709 -22.00996 -21.35108 -19.97168 -18.47907 -18.18900 -17.72791 -16.91555 -16.56741 -16.20144 -15.81431 -15.64880 -15.26628 -14.95006 -14.81780 -14.29120 -14.15911 -14.10322 -13.93493 -13.52670 -13.33758 -13.12119 -12.99942 -12.74523 -12.50017 -12.30768 -12.18029 -11.86301 -11.65253 -11.53458 -11.46683 -11.21906 -11.08340 -11.03916 -10.77903 -10.40229 -10.22965 -9.95122 -8.83899 -7.72293 -6.13699 1.35874 1.38257 1.46676 2.38758 2.50000 2.84823 3.04553 3.38900 3.73892 3.89728 4.04233 4.05687 4.14336 4.15132 4.19368 4.30270 4.44187 4.49251 4.54086 4.62996 4.70885 4.77265 4.79437 4.90138 4.93123 4.95333 5.00790 5.10392 5.14210 5.18405 5.22510 5.24195 5.30256 5.38489 5.51364 5.55873 5.67301 5.79673 5.89388 6.18877 6.26893 6.44258 6.52527 6.80488 6.94000 7.54136 8.92143 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.008922 C = 0.007509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.394778 B = 3137.495638 C = 3727.837371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.012 3.988 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.286 1.286 7 C -0.463 4.463 8 H 0.064 0.936 9 C 0.000 4.000 10 C 0.067 3.933 11 N -0.513 5.513 12 C 0.055 3.945 13 C -0.112 4.112 14 C -0.115 4.115 15 C -0.095 4.095 16 C 0.061 3.939 17 H 0.042 0.958 18 C 0.246 3.754 19 O -0.379 6.379 20 C -0.001 4.001 21 C 0.021 3.979 22 O -0.391 6.391 23 C -0.190 4.190 24 C -0.231 4.231 25 H 0.254 0.746 26 H 0.109 0.891 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.036 0.964 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.632 -6.068 4.032 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.184 4.184 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.212 1.212 7 C -0.500 4.500 8 H 0.081 0.919 9 C -0.002 4.002 10 C -0.059 4.059 11 N -0.238 5.238 12 C -0.073 4.073 13 C -0.150 4.150 14 C -0.153 4.153 15 C -0.133 4.133 16 C -0.048 4.048 17 H 0.060 0.940 18 C 0.151 3.849 19 O -0.301 6.301 20 C -0.076 4.076 21 C -0.055 4.055 22 O -0.312 6.312 23 C -0.228 4.228 24 C -0.269 4.269 25 H 0.066 0.934 26 H 0.126 0.874 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.149 0.851 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 11.619 -6.443 3.891 13.844 hybrid contribution -0.633 1.869 -0.034 1.974 sum 10.986 -4.574 3.857 12.510 Atomic orbital electron populations 1.69430 1.06628 1.24925 1.52991 1.25724 0.95514 1.01983 0.95182 0.85714 0.78626 0.80119 0.78147 1.20125 1.19768 1.21224 1.20978 0.92608 0.89787 1.46615 0.91867 1.19589 0.88897 0.94379 0.97300 1.22395 0.90311 0.93853 0.99369 1.62325 1.03702 1.55268 1.02480 1.22142 0.97554 0.99656 0.87925 1.21619 0.94009 1.00933 0.98399 1.21541 0.98605 0.99353 0.95799 1.21418 0.95126 1.02007 0.94725 1.22267 0.92704 0.97377 0.92430 0.94046 1.23917 0.74525 0.96229 0.90276 1.89331 1.32548 1.81528 1.26689 1.24687 0.92842 1.02360 0.87674 1.24330 0.97460 0.94481 0.89250 1.88807 1.27882 1.64687 1.49782 1.22517 1.11629 0.96798 0.91885 1.24413 1.00734 1.04536 0.97249 0.93433 0.87400 0.94015 0.92416 0.94299 0.91169 0.90878 0.93941 0.89632 0.90940 0.90753 0.89267 0.88828 0.87111 0.85118 0.91627 0.93437 0.92127 0.94519 0.82582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.54 9.26 21.45 0.20 -50.34 16 2 C 0.01 0.66 5.39 84.65 0.46 1.12 16 3 Si 0.95 43.42 29.54 68.60 2.03 45.45 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 7 C -0.46 -24.71 7.13 25.60 0.18 -24.53 16 8 H 0.06 3.39 4.33 -2.91 -0.01 3.37 16 9 C 0.00 -0.01 1.33 -52.93 -0.07 -0.08 16 10 C 0.07 2.97 5.44 86.30 0.47 3.43 16 11 N -0.51 -20.01 4.69 -871.11 -4.09 -24.10 16 12 C 0.06 2.15 3.96 86.32 0.34 2.50 16 13 C -0.11 -3.41 6.09 30.64 0.19 -3.23 16 14 C -0.12 -3.34 6.00 30.67 0.18 -3.15 16 15 C -0.09 -2.87 5.07 30.65 0.16 -2.71 16 16 C 0.06 2.25 1.84 44.94 0.08 2.33 16 17 H 0.04 1.85 4.88 -2.39 -0.01 1.84 16 18 C 0.25 8.16 3.41 71.98 0.25 8.41 16 19 O -0.38 -13.68 7.92 -126.22 -1.00 -14.68 16 20 C 0.00 -0.02 7.95 72.64 0.58 0.56 16 21 C 0.02 0.49 8.07 72.64 0.59 1.07 16 22 O -0.39 -11.57 10.10 -126.22 -1.28 -12.84 16 23 C -0.19 -9.58 7.73 30.62 0.24 -9.34 16 24 C -0.23 -12.19 9.33 30.62 0.29 -11.90 16 25 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 26 H 0.11 4.82 3.53 -66.08 -0.23 4.59 16 27 H 0.04 1.82 8.11 -2.39 -0.02 1.80 16 28 H 0.06 2.33 6.44 -2.39 -0.02 2.32 16 29 H 0.04 1.81 5.29 -2.38 -0.01 1.79 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 2.10 7.47 -2.38 -0.02 2.09 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.09 2.84 8.14 -2.39 -0.02 2.83 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 39 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.06 2.81 7.45 -2.39 -0.02 2.80 16 43 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 44 H 0.16 9.07 4.46 -49.68 -0.22 8.85 16 Total: -1.00 -60.75 319.57 0.34 -60.42 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.56 Total: 31.64 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 3.92 Total: -35.54 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -3.89 Total: -74.45 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -2.28 Total: -27.52 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -60.75 0.34 -60.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878048256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.283 kcal (2) G-P(sol) polarization free energy of solvation -60.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds