Wall clock time and date at job start Tue Mar 31 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00038 * 2 1 4 4 H 1.48501 * 109.47164 * 90.00261 * 3 2 1 5 5 H 1.48503 * 109.47411 * 210.00451 * 3 2 1 6 6 H 1.48503 * 109.47301 * 330.00515 * 3 2 1 7 7 C 1.37870 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00494 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47169 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.47183 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99853 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00079 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00110 * 179.97438 * 14 12 11 16 16 H 1.09004 * 110.04951 * 352.50393 * 15 14 12 17 17 C 1.54401 * 110.06869 * 230.96533 * 15 14 12 18 18 C 1.54934 * 104.20261 * 217.21347 * 17 15 14 19 19 C 1.54997 * 102.81301 * 37.67439 * 18 17 15 20 20 C 1.53378 * 110.06797 * 113.98222 * 15 14 12 21 21 C 1.53904 * 110.16664 * 359.84897 * 20 15 14 22 22 C 1.55424 * 102.08918 * 217.60962 * 21 20 15 23 23 C 1.54990 * 100.99926 * 33.72562 * 22 21 20 24 24 O 1.42681 * 110.87112 * 240.14275 * 20 15 14 25 25 H 0.97000 * 120.00297 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46905 * 299.99413 * 9 7 2 27 27 H 1.09000 * 109.47260 * 59.99957 * 9 7 2 28 28 H 1.09004 * 109.47188 * 299.99948 * 10 9 7 29 29 H 1.09000 * 109.47249 * 59.99216 * 10 9 7 30 30 H 1.09006 * 109.46941 * 299.99284 * 11 10 9 31 31 H 1.09000 * 109.47661 * 59.99486 * 11 10 9 32 32 H 0.97006 * 120.00096 * 359.97438 * 14 12 11 33 33 H 1.09006 * 110.48269 * 335.89282 * 17 15 14 34 34 H 1.09004 * 110.48396 * 98.53158 * 17 15 14 35 35 H 1.08997 * 110.74425 * 279.34262 * 18 17 15 36 36 H 1.09006 * 110.74276 * 156.00917 * 18 17 15 37 37 H 1.09002 * 110.51251 * 203.82609 * 19 18 17 38 38 H 1.09004 * 110.62293 * 81.17873 * 19 18 17 39 39 H 1.09004 * 110.90228 * 335.79889 * 21 20 15 40 40 H 1.08993 * 110.91125 * 99.41396 * 21 20 15 41 41 H 1.09006 * 111.11469 * 275.79366 * 22 21 20 42 42 H 1.09000 * 111.15145 * 151.67756 * 22 21 20 43 43 H 1.08997 * 110.31010 * 204.91216 * 23 22 21 44 44 H 1.09008 * 110.30173 * 82.76021 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9870 0.0001 12 6 2.4595 -6.1325 0.0007 13 8 3.6519 -5.9109 0.0002 14 7 2.0102 -7.4032 0.0019 15 6 2.9622 -8.5167 0.0020 16 1 3.9766 -8.1412 -0.1326 17 6 2.6114 -9.5137 -1.1237 18 6 2.9160 -10.9031 -0.5094 19 6 2.4565 -10.7368 0.9615 20 6 2.8600 -9.2964 1.3188 21 6 1.7928 -8.6631 2.2290 22 6 2.4344 -8.8137 3.6366 23 6 3.9372 -8.6477 3.2958 24 8 4.1048 -9.2819 2.0160 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 0.8898 27 1 0.6239 -2.5567 -0.8903 28 1 2.8719 -3.6044 -0.8905 29 1 2.8719 -3.6043 0.8894 30 1 0.8539 -5.0445 0.8904 31 1 0.8531 -5.0451 -0.8896 32 1 1.0565 -7.5805 0.0027 33 1 1.5565 -9.4359 -1.3870 34 1 3.2379 -9.3376 -1.9981 35 1 3.9827 -11.1214 -0.5583 36 1 2.3383 -11.6810 -1.0088 37 1 2.9724 -11.4488 1.6057 38 1 1.3768 -10.8622 1.0430 39 1 1.6432 -7.6124 1.9801 40 1 0.8538 -9.2133 2.1687 41 1 2.2335 -9.7994 4.0563 42 1 2.0950 -8.0264 4.3098 43 1 4.5524 -9.1430 4.0470 44 1 4.1958 -7.5907 3.2311 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882596777.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:00 Heat of formation + Delta-G solvation = -104.702696 kcal Electronic energy + Delta-G solvation = -22658.884177 eV Core-core repulsion = 19382.102628 eV Total energy + Delta-G solvation = -3276.781548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92616 -39.01533 -36.58543 -34.18470 -33.70744 -32.23086 -31.99754 -29.27726 -28.66971 -27.08241 -24.56733 -23.61855 -22.14823 -21.22739 -20.77457 -19.74763 -19.59998 -17.19907 -16.57270 -16.23848 -16.14060 -15.72247 -15.30117 -15.17676 -14.44517 -14.28398 -13.85611 -13.75717 -13.38428 -13.00227 -12.88078 -12.29388 -12.25897 -11.95744 -11.89659 -11.68133 -11.40010 -11.34861 -11.27718 -11.00665 -10.81273 -10.79648 -10.70682 -10.59906 -10.52025 -9.88300 -9.66857 -9.64302 -9.25436 -9.00482 -8.85065 -8.31478 -5.97187 -3.98498 2.90300 3.15197 3.35294 3.41072 3.46190 3.76945 4.17926 4.24708 4.50006 4.55544 4.61833 4.74823 4.84217 5.05059 5.11616 5.16018 5.31444 5.32575 5.38956 5.46149 5.50241 5.56759 5.60046 5.63367 5.66569 5.69250 5.71243 5.73722 5.85058 5.91475 5.97341 6.09372 6.27213 6.50115 6.73173 6.93556 6.98418 7.16959 7.59750 7.71624 7.84148 8.03548 8.46242 8.48259 9.08611 9.65500 11.14327 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028726 B = 0.003226 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.479625 B = 8677.273677 C = 9015.193722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.511 3.489 13 O -0.533 6.533 14 N -0.730 5.730 15 C 0.127 3.873 16 H 0.112 0.888 17 C -0.130 4.130 18 C -0.121 4.121 19 C -0.124 4.124 20 C 0.094 3.906 21 C -0.152 4.152 22 C -0.156 4.156 23 C 0.049 3.951 24 O -0.366 6.366 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.399 0.601 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 -24.579 3.379 24.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.299 3.701 13 O -0.408 6.408 14 N -0.383 5.383 15 C 0.022 3.978 16 H 0.130 0.870 17 C -0.168 4.168 18 C -0.159 4.159 19 C -0.162 4.162 20 C 0.053 3.947 21 C -0.190 4.190 22 C -0.193 4.193 23 C -0.027 4.027 24 O -0.285 6.285 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.234 0.766 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.741 -24.343 3.289 24.626 hybrid contribution -0.292 0.936 0.164 0.994 sum 1.449 -23.408 3.453 23.705 Atomic orbital electron populations 1.69960 1.06033 1.26526 1.51259 1.25016 0.94858 0.99248 0.95396 0.86594 0.79920 0.83413 0.78100 1.20684 1.19818 1.21267 1.21276 0.93198 0.91020 1.50087 0.92584 1.19133 0.93959 0.91481 0.97089 1.21443 0.98624 0.91532 1.01692 1.21859 0.98129 0.94165 1.03702 1.21331 0.90475 0.83827 0.74478 1.90685 1.17317 1.84499 1.48278 1.46273 1.09719 1.05696 1.76606 1.21825 0.96305 0.86484 0.93230 0.87038 1.22693 1.02016 0.94322 0.97799 1.22463 1.01753 0.96600 0.95120 1.22638 1.00914 0.95480 0.97170 1.22642 0.84449 0.94986 0.92665 1.23358 0.98280 1.03472 0.93876 1.23262 0.95678 1.02726 0.97649 1.23431 0.95905 0.98175 0.85203 1.88382 1.30522 1.79728 1.29818 0.93083 0.96655 0.96600 0.92691 0.92756 0.89477 0.89317 0.76608 0.90891 0.90798 0.90950 0.91189 0.90642 0.90585 0.88990 0.90061 0.90690 0.89919 0.89910 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.09 -2.06 4.44 -26.73 -0.12 -2.18 16 11 C -0.14 -2.26 5.70 -27.88 -0.16 -2.42 16 12 C 0.51 8.13 7.51 -10.98 -0.08 8.05 16 13 O -0.53 -10.80 15.35 5.55 0.09 -10.72 16 14 N -0.73 -8.46 2.86 -52.90 -0.15 -8.62 16 15 C 0.13 1.48 3.39 -67.00 -0.23 1.25 16 16 H 0.11 1.70 6.82 -51.93 -0.35 1.34 16 17 C -0.13 -1.16 6.55 -24.98 -0.16 -1.32 16 18 C -0.12 -0.95 6.91 -24.66 -0.17 -1.12 16 19 C -0.12 -1.01 6.12 -25.27 -0.15 -1.17 16 20 C 0.09 0.98 1.17 -89.54 -0.10 0.88 16 21 C -0.15 -1.41 5.50 -24.97 -0.14 -1.55 16 22 C -0.16 -1.38 7.16 -24.39 -0.17 -1.56 16 23 C 0.05 0.54 7.79 38.21 0.30 0.83 16 24 O -0.37 -4.69 10.61 -35.23 -0.37 -5.07 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 29 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.40 3.45 8.32 -40.82 -0.34 3.11 16 33 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 38 H 0.08 0.50 7.37 -51.93 -0.38 0.12 16 39 H 0.09 0.98 5.79 -51.93 -0.30 0.68 16 40 H 0.08 0.59 7.34 -51.93 -0.38 0.21 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -33.69 348.29 -8.85 -42.54 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.63 Total: -0.32 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.74 Total: -13.76 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.59 Total: -35.02 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.29 Total: -15.79 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.69 -8.85 -42.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882596777.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.162 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds