Wall clock time and date at job start Tue Mar 31 2020 05:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99783 * 2 1 4 4 H 1.48508 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47308 * 300.00073 * 3 2 1 6 6 H 1.48500 * 109.47018 * 60.00523 * 3 2 1 7 7 C 1.37875 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00285 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99876 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47221 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47290 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00161 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00357 * 179.97438 * 11 10 9 14 14 C 1.46922 * 120.63238 * 179.97438 * 13 11 10 15 15 C 1.53196 * 108.77606 * 233.63495 * 14 13 11 16 16 C 1.53037 * 109.31040 * 305.36550 * 15 14 13 17 17 O 1.42904 * 109.46064 * 301.34202 * 16 15 14 18 18 C 1.53000 * 109.46000 * 181.38842 * 16 15 14 19 19 C 1.53786 * 113.61348 * 284.13477 * 18 16 15 20 20 C 1.53951 * 87.02036 * 220.04537 * 19 18 16 21 21 C 1.53777 * 113.61709 * 186.53077 * 18 16 15 22 22 C 1.53039 * 109.54101 * 61.36876 * 16 15 14 23 23 C 1.46931 * 120.62714 * 0.02763 * 13 11 10 24 24 H 0.96996 * 120.00348 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47063 * 60.00543 * 9 7 2 26 26 H 1.09000 * 109.47385 * 300.00801 * 9 7 2 27 27 H 1.08999 * 109.47230 * 60.00348 * 10 9 7 28 28 H 1.09004 * 109.46994 * 300.00409 * 10 9 7 29 29 H 1.08999 * 109.58543 * 113.84583 * 14 13 11 30 30 H 1.08996 * 109.58946 * 353.42114 * 14 13 11 31 31 H 1.08999 * 109.50112 * 65.32084 * 15 14 13 32 32 H 1.09004 * 109.49641 * 185.41325 * 15 14 13 33 33 H 0.96704 * 113.99991 * 60.00548 * 17 16 15 34 34 H 1.09003 * 112.85046 * 55.33202 * 18 16 15 35 35 H 1.08997 * 113.61170 * 334.56972 * 19 18 16 36 36 H 1.09000 * 113.60810 * 105.46744 * 19 18 16 37 37 H 1.08998 * 113.53772 * 270.81423 * 20 19 18 38 38 H 1.08997 * 113.74223 * 139.94462 * 20 19 18 39 39 H 1.09009 * 113.61615 * 254.52917 * 21 18 16 40 40 H 1.09003 * 113.61730 * 25.42572 * 21 18 16 41 41 H 1.09000 * 109.50219 * 178.68690 * 22 16 15 42 42 H 1.08993 * 109.52527 * 58.59948 * 22 16 15 43 43 H 1.09000 * 109.57916 * 246.14924 * 23 13 11 44 44 H 1.08997 * 109.58813 * 6.57526 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0021 13 7 2.1658 -6.1344 -0.0018 14 6 1.4453 -7.4148 -0.0019 15 6 1.9534 -8.2666 1.1656 16 6 3.4748 -8.4015 1.0691 17 8 3.8212 -9.0015 -0.1807 18 6 3.9823 -9.2804 2.2140 19 6 4.0122 -8.5636 3.5743 20 6 5.3518 -9.2776 3.8306 21 6 5.5158 -9.3511 2.3034 22 6 4.1186 -7.0165 1.1657 23 6 3.6350 -6.1505 -0.0013 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5568 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8720 -3.6044 0.8895 28 1 2.8721 -3.6042 -0.8905 29 1 1.6275 -7.9365 -0.9414 30 1 0.3771 -7.2330 0.1163 31 1 1.6898 -7.7866 2.1081 32 1 1.4969 -9.2554 1.1203 33 1 3.5298 -8.4977 -0.9531 34 1 3.4976 -10.2563 2.2453 35 1 4.1030 -7.4803 3.4950 36 1 3.2146 -8.8743 4.2491 37 1 5.2415 -10.2526 4.3053 38 1 6.0968 -8.6504 4.3201 39 1 5.9305 -10.2966 1.9537 40 1 6.0186 -8.4835 1.8759 41 1 5.2032 -7.1154 1.1203 42 1 3.8352 -6.5479 2.1081 43 1 3.9961 -6.5690 -0.9407 44 1 4.0116 -5.1345 0.1172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884978813.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:48 Heat of formation + Delta-G solvation = -77.635036 kcal Electronic energy + Delta-G solvation = -22959.132844 eV Core-core repulsion = 19683.525038 eV Total energy + Delta-G solvation = -3275.607806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.89537 -39.12433 -37.27027 -35.05035 -33.54796 -31.96381 -31.24465 -30.60609 -27.22809 -25.92892 -25.56519 -23.60825 -23.30928 -21.68096 -20.48331 -19.13881 -18.37575 -17.46756 -16.64489 -16.29417 -15.62996 -15.53552 -15.44217 -15.07689 -14.69367 -14.42310 -14.23503 -13.40960 -13.17229 -12.87759 -12.67786 -12.37415 -12.24468 -12.13934 -12.08442 -11.86688 -11.76856 -11.33126 -11.21690 -11.08513 -10.95959 -10.74163 -10.58379 -10.54969 -10.19677 -9.98795 -9.85570 -9.60808 -9.19022 -9.00523 -8.47984 -8.33048 -5.97447 -4.01991 3.16172 3.21310 3.31520 3.38837 3.41912 3.84170 4.28667 4.37098 4.45641 4.56497 4.58191 4.69188 4.82206 4.83483 4.95278 5.06002 5.14221 5.33011 5.37601 5.40427 5.44097 5.51164 5.56049 5.67162 5.68432 5.70835 5.75315 5.81378 5.86448 5.92918 6.03606 6.07386 6.17595 6.18417 6.29622 6.68206 6.87293 7.45764 7.68691 7.73121 7.84189 8.05473 8.36655 8.70330 9.06578 9.61746 11.13531 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025553 B = 0.003606 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.483415 B = 7762.919192 C = 8287.474588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.513 3.487 12 O -0.533 6.533 13 N -0.627 5.627 14 C 0.106 3.894 15 C -0.157 4.157 16 C 0.146 3.854 17 O -0.557 6.557 18 C -0.094 4.094 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.130 4.130 22 C -0.166 4.166 23 C 0.104 3.896 24 H 0.260 0.740 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.373 0.627 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.181 -20.298 4.051 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.304 3.696 12 O -0.408 6.408 13 N -0.364 5.364 14 C -0.017 4.017 15 C -0.196 4.196 16 C 0.105 3.895 17 O -0.365 6.365 18 C -0.113 4.113 19 C -0.176 4.176 20 C -0.182 4.182 21 C -0.168 4.168 22 C -0.204 4.204 23 C -0.020 4.020 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.222 0.778 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.605 -20.603 4.439 23.593 hybrid contribution 0.206 1.277 -0.343 1.338 sum 10.811 -19.326 4.097 22.520 Atomic orbital electron populations 1.70007 1.06060 1.26487 1.50246 1.25028 0.94821 0.99243 0.95296 0.86541 0.80003 0.83846 0.77603 1.19739 1.21007 1.21008 1.21246 0.92931 0.90981 1.51316 0.92573 1.18913 0.93176 0.89401 0.98605 1.21882 1.00732 0.91966 1.02229 1.21603 0.88417 0.85466 0.74131 1.90662 1.14416 1.87119 1.48557 1.48357 1.06283 1.05894 1.75829 1.21487 0.99070 0.83879 0.97287 1.22551 0.96108 1.00732 1.00163 1.21023 0.92655 0.91364 0.84445 1.86508 1.82223 1.52648 1.15088 1.22472 0.96880 0.98977 0.92928 1.23135 0.97900 1.00613 0.95930 1.22857 0.97715 1.00766 0.96841 1.22905 0.95711 1.02441 0.95697 1.22761 1.01533 0.95913 1.00164 1.21712 0.80229 1.02132 0.97890 0.92993 0.95832 0.95865 0.90310 0.90276 0.92055 0.88635 0.90481 0.90354 0.77835 0.88986 0.89196 0.91371 0.90406 0.91380 0.91627 0.89659 0.89731 0.89935 0.91660 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.59 3.99 -27.89 -0.11 -2.70 16 11 C 0.51 9.89 7.70 -10.99 -0.08 9.81 16 12 O -0.53 -12.56 15.40 5.55 0.09 -12.47 16 13 N -0.63 -8.84 2.97 -172.79 -0.51 -9.36 16 14 C 0.11 1.30 6.01 -3.71 -0.02 1.28 16 15 C -0.16 -1.63 5.04 -26.61 -0.13 -1.76 16 16 C 0.15 1.38 0.69 -90.58 -0.06 1.31 16 17 O -0.56 -5.56 12.80 -35.23 -0.45 -6.01 16 18 C -0.09 -0.82 3.28 -89.81 -0.29 -1.11 16 19 C -0.14 -1.12 7.21 -25.83 -0.19 -1.31 16 20 C -0.14 -1.06 8.09 -25.83 -0.21 -1.27 16 21 C -0.13 -1.06 7.37 -25.92 -0.19 -1.25 16 22 C -0.17 -1.56 4.28 -26.63 -0.11 -1.67 16 23 C 0.10 1.12 5.91 -3.73 -0.02 1.09 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.08 1.45 7.69 -51.93 -0.40 1.05 16 28 H 0.08 1.46 7.94 -51.93 -0.41 1.04 16 29 H 0.06 0.65 7.02 -51.93 -0.36 0.28 16 30 H 0.10 1.40 7.00 -51.93 -0.36 1.03 16 31 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.37 3.13 5.84 45.56 0.27 3.40 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.76 5.66 -51.93 -0.29 0.47 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 40 H 0.09 0.69 6.01 -51.93 -0.31 0.38 16 41 H 0.08 0.71 6.13 -51.93 -0.32 0.39 16 42 H 0.08 0.83 6.12 -51.93 -0.32 0.51 16 43 H 0.07 0.59 7.03 -51.93 -0.36 0.23 16 44 H 0.10 1.07 5.93 -51.93 -0.31 0.77 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -33.49 335.23 -8.60 -42.09 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.52 Total: 1.11 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.96 Total: -10.29 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.22 Total: -36.01 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.37 Total: -18.48 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.49 -8.60 -42.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884978813.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.548 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds