Wall clock time and date at job start Tue Mar 31 2020 06:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00192 * 2 1 4 4 H 1.48495 * 109.47348 * 269.99964 * 3 2 1 5 5 H 1.48503 * 109.46932 * 30.00059 * 3 2 1 6 6 H 1.48505 * 109.47261 * 149.99767 * 3 2 1 7 7 C 1.37878 * 119.99427 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99624 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00523 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47715 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47715 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99729 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00150 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99913 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.47452 * 35.00280 * 14 13 11 16 16 C 1.53001 * 109.47317 * 275.00581 * 14 13 11 17 17 C 1.53000 * 117.50223 * 65.00098 * 16 14 13 18 18 C 1.52997 * 117.49889 * 356.37359 * 16 14 13 19 19 C 1.53003 * 109.47152 * 155.00286 * 14 13 11 20 20 H 1.08996 * 109.52280 * 179.97438 * 19 14 13 21 21 C 1.53173 * 109.52408 * 300.12737 * 19 14 13 22 22 C 1.53170 * 109.03812 * 176.88316 * 21 19 14 23 23 C 1.53088 * 109.16537 * 303.01924 * 22 21 19 24 24 O 1.42902 * 109.41498 * 57.61002 * 23 22 21 25 25 C 1.42915 * 114.14994 * 298.87344 * 24 23 22 26 26 H 0.97002 * 119.99625 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46977 * 60.00006 * 9 7 2 28 28 H 1.09003 * 109.47346 * 300.00657 * 9 7 2 29 29 H 1.09003 * 109.46856 * 59.99977 * 10 9 7 30 30 H 1.09003 * 109.47287 * 300.00739 * 10 9 7 31 31 H 0.96994 * 119.99982 * 0.02562 * 13 11 10 32 32 H 1.09002 * 115.55911 * 210.68787 * 16 14 13 33 33 H 1.08990 * 117.49990 * 145.01974 * 17 16 14 34 34 H 1.09004 * 117.49237 * 359.97438 * 17 16 14 35 35 H 1.08999 * 117.49685 * 0.02562 * 18 16 14 36 36 H 1.08999 * 117.52022 * 214.97106 * 18 16 14 37 37 H 1.09008 * 109.54341 * 296.75406 * 21 19 14 38 38 H 1.09000 * 109.54284 * 57.01473 * 21 19 14 39 39 H 1.09007 * 109.52369 * 62.92821 * 22 21 19 40 40 H 1.09003 * 109.52463 * 183.11012 * 22 21 19 41 41 H 1.09002 * 109.47861 * 177.58988 * 23 22 21 42 42 H 1.08999 * 109.47770 * 297.61413 * 23 22 21 43 43 H 1.08998 * 109.42751 * 301.11168 * 25 24 23 44 44 H 1.09000 * 109.53627 * 181.07227 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 6 1.4916 -4.9672 -0.0012 12 8 0.2788 -4.9672 -0.0003 13 7 2.1655 -6.1345 -0.0026 14 6 1.4329 -7.4031 -0.0026 15 1 0.5216 -7.2965 -0.5910 16 6 1.0705 -7.7827 1.4346 17 6 0.0980 -6.8688 2.1829 18 6 1.5821 -6.8755 2.5553 19 6 2.3094 -8.4982 -0.6138 20 1 1.7653 -9.4426 -0.6138 21 6 2.6755 -8.1178 -2.0517 22 6 3.6156 -9.1820 -2.6261 23 6 4.8477 -9.3031 -1.7255 24 8 4.4346 -9.6281 -0.3967 25 6 3.5912 -8.6467 0.2100 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6245 -2.5571 0.8896 29 1 2.8724 -3.6049 0.8877 30 1 2.8712 -3.6041 -0.8922 31 1 3.1354 -6.1345 -0.0037 32 1 1.0144 -8.8520 1.6386 33 1 -0.5977 -7.3368 2.8792 34 1 -0.2832 -5.9968 1.6514 35 1 2.1765 -6.0080 2.2687 36 1 1.8625 -7.3476 3.4969 37 1 1.7704 -8.0658 -2.6569 38 1 3.1751 -7.1490 -2.0566 39 1 3.0987 -10.1408 -2.6671 40 1 3.9253 -8.8910 -3.6299 41 1 5.5000 -10.0891 -2.1059 42 1 5.3865 -8.3556 -1.7175 43 1 4.1140 -7.6909 0.2446 44 1 3.3381 -8.9596 1.2230 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885481789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:33 Heat of formation + Delta-G solvation = -78.310841 kcal Electronic energy + Delta-G solvation = -22969.678011 eV Core-core repulsion = 19694.040899 eV Total energy + Delta-G solvation = -3275.637112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.53999 -38.98852 -37.01314 -34.66740 -33.45652 -33.05144 -31.60945 -30.72573 -27.10794 -25.47315 -25.23933 -22.96239 -22.15352 -21.94323 -20.33866 -19.85860 -19.48120 -17.02656 -16.70403 -16.22170 -16.07760 -15.62409 -15.51736 -14.80226 -14.56727 -14.39336 -14.31993 -13.98472 -13.32537 -13.07736 -12.86248 -12.33246 -12.24158 -12.12813 -11.83600 -11.62344 -11.33753 -11.26013 -11.16765 -10.95755 -10.92383 -10.61216 -10.53912 -10.15393 -9.96566 -9.90901 -9.66970 -9.56842 -9.17604 -9.01090 -8.71245 -8.32727 -5.96998 -4.01348 3.21028 3.32529 3.38430 3.40736 3.47913 3.63196 3.99029 4.40626 4.46914 4.49368 4.59797 4.69195 4.86131 4.99224 5.04918 5.13900 5.20357 5.28205 5.37104 5.38130 5.46784 5.47471 5.54657 5.64880 5.69694 5.75086 5.84620 5.89788 5.99069 6.06029 6.08965 6.19927 6.21941 6.28877 6.59484 6.77144 6.87708 6.95236 7.73234 7.85108 7.86527 8.06042 8.37974 8.77800 9.07200 9.62316 11.13890 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021068 B = 0.003915 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.702230 B = 7149.791686 C = 7852.288827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.131 4.131 11 C 0.511 3.489 12 O -0.528 6.528 13 N -0.737 5.737 14 C 0.182 3.818 15 H 0.092 0.908 16 C -0.174 4.174 17 C -0.181 4.181 18 C -0.175 4.175 19 C -0.124 4.124 20 H 0.090 0.910 21 C -0.119 4.119 22 C -0.155 4.155 23 C 0.058 3.942 24 O -0.383 6.383 25 C 0.067 3.933 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.394 0.606 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.249 -20.434 -1.226 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.171 4.171 11 C 0.300 3.700 12 O -0.403 6.403 13 N -0.392 5.392 14 C 0.077 3.923 15 H 0.110 0.890 16 C -0.194 4.194 17 C -0.218 4.218 18 C -0.212 4.212 19 C -0.143 4.143 20 H 0.108 0.892 21 C -0.157 4.157 22 C -0.193 4.193 23 C -0.019 4.019 24 O -0.302 6.302 25 C -0.010 4.010 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.229 0.771 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.140 0.860 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.250 -20.462 -1.138 21.738 hybrid contribution 0.795 1.119 -0.120 1.378 sum 8.045 -19.343 -1.259 20.987 Atomic orbital electron populations 1.69999 1.06043 1.26567 1.50188 1.25014 0.94812 0.99194 0.95293 0.86604 0.79792 0.83568 0.78061 1.20687 1.21210 1.19899 1.21218 0.92892 0.91056 1.51404 0.92690 1.18878 0.93115 0.89323 0.98575 1.21877 1.00757 0.92167 1.02339 1.21517 0.88724 0.85611 0.74132 1.90603 1.14369 1.87464 1.47887 1.46370 1.09820 1.05419 1.77592 1.20316 0.95330 0.82725 0.93946 0.88997 1.22750 1.06630 0.96906 0.93076 1.23336 0.92310 1.03227 1.02892 1.22922 0.98241 1.02128 0.97922 1.22049 0.97273 0.99292 0.95679 0.89191 1.21644 1.00045 0.98826 0.95151 1.22192 0.97378 1.00112 0.99609 1.22594 0.95598 1.00998 0.82682 1.87935 1.67527 1.46212 1.28517 1.22643 0.89478 0.92081 0.96760 0.92962 0.95884 0.95812 0.90396 0.90412 0.77078 0.87757 0.89696 0.86018 0.88524 0.89536 0.91157 0.91216 0.91141 0.90829 0.89078 0.93104 0.93228 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 10 C -0.13 -2.58 5.64 -27.89 -0.16 -2.74 16 11 C 0.51 9.18 6.51 -10.99 -0.07 9.11 16 12 O -0.53 -11.55 12.97 5.56 0.07 -11.48 16 13 N -0.74 -9.54 2.92 -53.81 -0.16 -9.70 16 14 C 0.18 2.15 2.16 -67.93 -0.15 2.00 16 15 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 16 C -0.17 -2.03 4.54 -90.62 -0.41 -2.44 16 17 C -0.18 -2.58 9.85 -26.73 -0.26 -2.84 16 18 C -0.17 -2.19 9.68 -26.73 -0.26 -2.45 16 19 C -0.12 -1.16 2.20 -90.48 -0.20 -1.36 16 20 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 21 C -0.12 -1.09 5.19 -26.55 -0.14 -1.23 16 22 C -0.16 -1.21 6.14 -26.60 -0.16 -1.38 16 23 C 0.06 0.47 6.84 37.20 0.25 0.73 16 24 O -0.38 -3.92 10.76 -35.23 -0.38 -4.30 16 25 C 0.07 0.62 5.71 37.21 0.21 0.83 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 28 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.39 4.23 6.61 -40.82 -0.27 3.96 16 32 H 0.10 1.04 8.07 -51.93 -0.42 0.62 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.12 2.20 5.26 -51.93 -0.27 1.93 16 35 H 0.10 1.33 6.40 -51.93 -0.33 1.00 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.07 0.68 7.37 -51.93 -0.38 0.30 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.44 6.43 -51.93 -0.33 0.10 16 44 H 0.10 0.88 7.31 -51.93 -0.38 0.50 16 LS Contribution 342.77 15.07 5.17 5.17 Total: -1.00 -32.43 342.77 -8.85 -41.28 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.39 Total: 3.43 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -1.87 Total: -14.42 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.58 Total: -36.24 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.31 Total: -15.78 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.43 -8.85 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885481789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.034 kcal (2) G-P(sol) polarization free energy of solvation -32.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds