Wall clock time and date at job start Tue Mar 31 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99858 * 2 1 4 4 H 1.48500 * 109.47008 * 269.99606 * 3 2 1 5 5 H 1.48498 * 109.47543 * 29.99823 * 3 2 1 6 6 H 1.48510 * 109.46909 * 149.99721 * 3 2 1 7 7 C 1.37874 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99722 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00075 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46967 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47347 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99738 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00383 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00144 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.46935 * 324.99752 * 14 13 11 16 16 C 1.52998 * 109.46988 * 85.00222 * 14 13 11 17 17 C 1.52989 * 117.50212 * 8.74329 * 16 14 13 18 18 C 1.52999 * 117.49650 * 300.08087 * 16 14 13 19 19 C 1.53005 * 109.47148 * 204.99941 * 14 13 11 20 20 H 1.09002 * 109.52314 * 184.99890 * 19 14 13 21 21 C 1.53181 * 109.52320 * 64.87309 * 19 14 13 22 22 C 1.53169 * 109.03929 * 183.05013 * 21 19 14 23 23 C 1.53101 * 109.16257 * 56.97887 * 22 21 19 24 24 O 1.42903 * 109.41341 * 302.39403 * 23 22 21 25 25 C 1.42900 * 114.09799 * 61.16062 * 24 23 22 26 26 H 0.97000 * 120.00043 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47056 * 60.00590 * 9 7 2 28 28 H 1.09004 * 109.47080 * 299.99998 * 9 7 2 29 29 H 1.09002 * 109.47265 * 60.00164 * 10 9 7 30 30 H 1.08996 * 109.47336 * 300.00112 * 10 9 7 31 31 H 0.97002 * 119.99959 * 0.02562 * 13 11 10 32 32 H 1.09008 * 115.54922 * 154.41988 * 16 14 13 33 33 H 1.09008 * 117.50071 * 0.02562 * 17 16 14 34 34 H 1.08998 * 117.50088 * 145.02241 * 17 16 14 35 35 H 1.08999 * 117.50205 * 214.98149 * 18 16 14 36 36 H 1.08998 * 117.50177 * 359.97438 * 18 16 14 37 37 H 1.09003 * 109.54262 * 302.92309 * 21 19 14 38 38 H 1.08996 * 109.53955 * 63.18190 * 21 19 14 39 39 H 1.08995 * 109.52819 * 176.88447 * 22 21 19 40 40 H 1.09001 * 109.52398 * 297.07999 * 22 21 19 41 41 H 1.09000 * 109.47517 * 62.37679 * 23 22 21 42 42 H 1.08997 * 109.47763 * 182.39886 * 23 22 21 43 43 H 1.09000 * 109.48323 * 178.85848 * 25 24 23 44 44 H 1.08998 * 109.48675 * 58.81697 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5285 -2.6366 0.0022 12 8 6.1350 -1.5863 0.0036 13 7 6.2024 -3.8037 0.0018 14 6 7.6674 -3.8037 0.0036 15 1 8.0314 -2.9613 -0.5846 16 6 8.1757 -3.6796 1.4413 17 6 7.1452 -3.7892 2.5668 18 6 7.7688 -2.4327 2.2291 19 6 8.1782 -5.1105 -0.6068 20 1 9.2644 -5.1505 -0.5254 21 6 7.7726 -5.1792 -2.0824 22 6 8.2223 -6.5237 -2.6621 23 6 7.6076 -7.6575 -1.8372 24 8 7.9993 -7.5166 -0.4701 25 6 7.5651 -6.2988 0.1387 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6801 0.8912 28 1 3.8752 -0.6803 -0.8889 29 1 3.6586 -3.1502 -0.8893 30 1 3.6579 -3.1506 0.8907 31 1 5.7174 -4.6438 0.0003 32 1 9.1685 -4.0899 1.6261 33 1 6.1051 -3.9503 2.2831 34 1 7.4601 -4.2715 3.4922 35 1 8.4937 -2.0230 2.9326 36 1 7.1395 -1.7007 1.7231 37 1 6.6896 -5.0893 -2.1674 38 1 8.2512 -4.3675 -2.6302 39 1 7.8891 -6.6040 -3.6968 40 1 9.3094 -6.5923 -2.6222 41 1 6.5210 -7.6125 -1.9106 42 1 7.9584 -8.6163 -2.2191 43 1 7.8854 -6.2788 1.1803 44 1 6.4779 -6.2360 0.0911 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885481797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:55 Heat of formation + Delta-G solvation = -74.781567 kcal Electronic energy + Delta-G solvation = -23041.918893 eV Core-core repulsion = 19766.434822 eV Total energy + Delta-G solvation = -3275.484071 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.63235 -39.08010 -37.12411 -34.71717 -33.49425 -33.15503 -31.67680 -31.02229 -27.32275 -25.72024 -25.34551 -22.99509 -22.21747 -21.72120 -20.35207 -19.85739 -19.57024 -17.32849 -16.75472 -16.35736 -16.24953 -15.78762 -15.61479 -14.83501 -14.61940 -14.42861 -14.19432 -14.01436 -13.44119 -13.15281 -12.90791 -12.57567 -12.42619 -12.30557 -11.96164 -11.67987 -11.44554 -11.39064 -11.33767 -11.02734 -10.94641 -10.60549 -10.23532 -10.16436 -10.06403 -9.96583 -9.78737 -9.62239 -9.24628 -9.18023 -8.82112 -8.51847 -6.04184 -4.03044 3.05778 3.36481 3.37181 3.43648 3.53982 3.59638 3.89498 4.35385 4.44091 4.49682 4.54909 4.65386 4.82082 4.93362 4.98068 5.05683 5.15195 5.20223 5.31383 5.32068 5.38762 5.42236 5.49016 5.57815 5.64736 5.70883 5.77169 5.83042 5.90929 5.98394 6.02720 6.06399 6.07107 6.19319 6.49403 6.64329 6.68097 6.91581 7.34316 7.41713 7.72145 7.78490 8.48655 8.63321 8.98814 9.58871 11.08691 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.004140 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.880956 B = 6761.983216 C = 7352.975692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.124 4.124 11 C 0.512 3.488 12 O -0.534 6.534 13 N -0.736 5.736 14 C 0.182 3.818 15 H 0.093 0.907 16 C -0.173 4.173 17 C -0.176 4.176 18 C -0.183 4.183 19 C -0.124 4.124 20 H 0.090 0.910 21 C -0.120 4.120 22 C -0.155 4.155 23 C 0.057 3.943 24 O -0.382 6.382 25 C 0.067 3.933 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.018 0.982 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.396 0.604 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.393 -15.012 -1.290 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.035 4.035 10 C -0.164 4.164 11 C 0.301 3.699 12 O -0.410 6.410 13 N -0.391 5.391 14 C 0.077 3.923 15 H 0.111 0.889 16 C -0.192 4.192 17 C -0.213 4.213 18 C -0.219 4.219 19 C -0.143 4.143 20 H 0.109 0.891 21 C -0.157 4.157 22 C -0.193 4.193 23 C -0.019 4.019 24 O -0.301 6.301 25 C -0.010 4.010 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.232 0.768 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.139 0.861 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 18.772 -14.257 -1.198 23.603 hybrid contribution 0.015 0.680 -0.149 0.696 sum 18.787 -13.577 -1.347 23.219 Atomic orbital electron populations 1.69913 1.06308 1.26974 1.51055 1.24968 0.94693 0.99213 0.94315 0.86799 0.80624 0.83419 0.78718 1.20278 1.21452 1.18524 1.21111 0.89310 0.94531 1.51364 0.90999 1.19351 0.96384 0.90128 0.97617 1.21683 0.88127 1.03338 1.03222 1.21507 0.91487 0.82924 0.74014 1.90592 1.70585 1.31457 1.48345 1.46366 1.06241 1.09188 1.77257 1.20334 0.80644 0.97338 0.94020 0.88935 1.22742 0.99299 1.04508 0.92684 1.22940 0.98693 1.01406 0.98279 1.23368 1.03891 0.91984 1.02705 1.22051 1.01865 0.94688 0.95679 0.89133 1.21657 1.01980 0.97342 0.94742 1.22189 1.01727 0.95422 0.99937 1.22605 0.98661 0.98678 0.81987 1.87944 1.78274 1.38865 1.24983 1.22633 0.97915 0.83193 0.97284 0.92715 0.95821 0.96327 0.89762 0.89709 0.76812 0.87669 0.88542 0.89432 0.89658 0.86084 0.91215 0.91193 0.90797 0.91132 0.93038 0.89019 0.88278 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 7 C -0.53 -14.89 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 9 C 0.00 0.08 3.33 -27.88 -0.09 -0.02 16 10 C -0.12 -2.31 5.64 -27.88 -0.16 -2.47 16 11 C 0.51 8.64 6.67 -10.99 -0.07 8.57 16 12 O -0.53 -10.90 13.01 5.56 0.07 -10.83 16 13 N -0.74 -8.99 2.93 -53.81 -0.16 -9.15 16 14 C 0.18 2.02 2.13 -67.93 -0.14 1.88 16 15 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 16 C -0.17 -1.90 4.75 -90.63 -0.43 -2.34 16 17 C -0.18 -2.05 9.74 -26.70 -0.26 -2.31 16 18 C -0.18 -2.47 9.82 -26.69 -0.26 -2.73 16 19 C -0.12 -1.09 2.18 -90.47 -0.20 -1.29 16 20 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 21 C -0.12 -1.04 5.23 -26.55 -0.14 -1.18 16 22 C -0.16 -1.16 6.14 -26.59 -0.16 -1.32 16 23 C 0.06 0.45 6.84 37.21 0.25 0.71 16 24 O -0.38 -3.81 10.77 -35.23 -0.38 -4.19 16 25 C 0.07 0.59 5.72 37.21 0.21 0.80 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 28 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 31 H 0.40 4.01 6.54 -40.82 -0.27 3.74 16 32 H 0.11 1.00 8.11 -51.92 -0.42 0.57 16 33 H 0.10 1.21 6.67 -51.92 -0.35 0.86 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.12 2.07 5.02 -51.93 -0.26 1.81 16 37 H 0.07 0.65 7.68 -51.93 -0.40 0.26 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.85 7.47 -51.93 -0.39 0.46 16 44 H 0.05 0.42 6.20 -51.93 -0.32 0.10 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -32.58 339.89 -8.50 -41.08 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.37 Total: 2.29 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -1.88 Total: -14.99 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.62 Total: -36.30 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.31 Total: -15.01 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.58 -8.50 -41.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885481797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.705 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds