Wall clock time and date at job start Tue Mar 31 2020 06:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99894 * 2 1 4 4 H 1.48499 * 109.47205 * 270.00352 * 3 2 1 5 5 H 1.48506 * 109.47307 * 30.00567 * 3 2 1 6 6 H 1.48501 * 109.47328 * 150.00350 * 3 2 1 7 7 C 1.37880 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99971 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.87398 * 62.39397 * 9 7 2 11 11 C 1.55146 * 110.99220 * 298.54904 * 9 7 2 12 12 C 1.54319 * 103.01999 * 206.21600 * 11 9 7 13 13 N 1.47442 * 107.23055 * 22.28489 * 12 11 9 14 14 C 1.46901 * 110.99941 * 123.26043 * 13 12 11 15 15 C 1.53000 * 109.47152 * 69.87121 * 14 13 12 16 16 H 1.09003 * 109.82259 * 305.88194 * 15 14 13 17 17 C 1.54385 * 109.82552 * 185.00241 * 15 14 13 18 18 C 1.55306 * 102.24929 * 219.12751 * 17 15 14 19 19 C 1.54947 * 100.94113 * 34.13328 * 18 17 15 20 20 H 1.08996 * 110.31276 * 82.47459 * 19 18 17 21 21 C 1.53006 * 110.30761 * 204.64174 * 19 18 17 22 22 C 1.53005 * 117.49594 * 248.74495 * 21 19 18 23 23 C 1.53007 * 117.49663 * 180.08928 * 21 19 18 24 24 O 1.43232 * 109.83445 * 66.86733 * 15 14 13 25 25 C 1.47845 * 108.56897 * 0.98840 * 13 12 11 26 26 H 0.97000 * 120.00570 * 359.97438 * 1 2 3 27 27 H 0.96704 * 113.99853 * 297.60504 * 10 9 7 28 28 H 1.09000 * 110.70403 * 87.83387 * 11 9 7 29 29 H 1.08998 * 110.85514 * 324.67276 * 11 9 7 30 30 H 1.08996 * 109.88715 * 262.87377 * 12 11 9 31 31 H 1.08995 * 110.02337 * 141.76341 * 12 11 9 32 32 H 1.08994 * 109.46857 * 309.86678 * 14 13 12 33 33 H 1.09002 * 109.47036 * 189.86824 * 14 13 12 34 34 H 1.08994 * 110.84803 * 100.93722 * 17 15 14 35 35 H 1.09001 * 110.84776 * 337.31560 * 17 15 14 36 36 H 1.09001 * 111.12832 * 276.21597 * 18 17 15 37 37 H 1.08998 * 111.16069 * 152.06586 * 18 17 15 38 38 H 1.08995 * 115.55329 * 34.41752 * 21 19 18 39 39 H 1.09001 * 117.50111 * 0.02562 * 22 21 19 40 40 H 1.09000 * 117.49610 * 145.01914 * 22 21 19 41 41 H 1.08995 * 117.49676 * 214.97545 * 23 21 19 42 42 H 1.08992 * 117.49892 * 359.97438 * 23 21 19 43 43 H 1.08994 * 110.37160 * 94.73968 * 25 13 12 44 44 H 1.09009 * 110.36952 * 217.07880 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4602 -2.6305 -1.1835 11 6 0.3742 -2.6347 1.2721 12 6 0.2532 -4.1628 1.4499 13 7 1.3911 -4.7764 0.7409 14 6 2.1849 -5.6167 1.6473 15 6 1.3816 -6.8640 2.0211 16 1 0.4113 -6.5720 2.4229 17 6 2.1558 -7.6904 3.0705 18 6 1.8820 -9.1479 2.6094 19 6 1.8319 -8.9654 1.0715 20 1 2.8403 -8.9604 0.6580 21 6 0.9997 -10.0785 0.4315 22 6 1.7379 -11.1079 -0.4267 23 6 0.8436 -10.0577 -1.0905 24 8 1.2021 -7.6909 0.8655 25 6 2.2180 -3.6991 0.1566 26 1 -0.4851 0.8400 0.0004 27 1 -0.2255 -1.9548 -1.2752 28 1 -0.6067 -2.1863 1.1138 29 1 0.8678 -2.1843 2.1333 30 1 -0.6847 -4.5131 1.0192 31 1 0.2938 -4.4197 2.5084 32 1 2.4228 -5.0536 2.5497 33 1 3.1085 -5.9147 1.1510 34 1 1.7574 -7.5186 4.0704 35 1 3.2216 -7.4652 3.0323 36 1 0.9279 -9.5089 2.9934 37 1 2.6961 -9.8120 2.8998 38 1 0.1517 -10.4289 1.0196 39 1 2.8164 -10.9923 -0.5350 40 1 1.3752 -12.1355 -0.4034 41 1 -0.1071 -10.3948 -1.5035 42 1 1.3333 -9.2509 -1.6356 43 1 3.0362 -3.4416 0.8291 44 1 2.6061 -4.0035 -0.8155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886265256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:51 Heat of formation + Delta-G solvation = -68.261097 kcal Electronic energy + Delta-G solvation = -22907.493228 eV Core-core repulsion = 19632.291906 eV Total energy + Delta-G solvation = -3275.201322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.80465 -38.17714 -36.70954 -34.58008 -32.09683 -32.06875 -30.88418 -28.54202 -27.94860 -25.47178 -23.94875 -22.50264 -22.16817 -21.36161 -20.38444 -19.54413 -19.36554 -17.02937 -16.66454 -16.39841 -15.17896 -14.86467 -14.81139 -14.66917 -14.47420 -13.92272 -13.58606 -13.33255 -12.67996 -12.52840 -12.29428 -12.07571 -11.75984 -11.64555 -11.56511 -11.39198 -11.31178 -11.18206 -11.04802 -10.86618 -10.79478 -10.57219 -10.38793 -10.34685 -10.17877 -10.07851 -9.78026 -9.27672 -9.09062 -8.55185 -8.01316 -7.43732 -6.17116 -4.25302 3.24107 3.31007 3.33888 3.47776 4.13437 4.31758 4.40319 4.48688 4.63196 4.84342 4.91162 5.01316 5.10049 5.11219 5.20830 5.35680 5.41113 5.53369 5.57775 5.64028 5.71748 5.72103 5.82483 5.86184 5.92500 5.97052 6.05013 6.07137 6.11926 6.20598 6.23187 6.37440 6.55117 6.75941 6.95041 7.14533 7.31578 7.47781 7.54685 7.74321 7.85388 7.92972 8.23136 8.77009 9.43323 9.59190 10.89700 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032761 B = 0.003618 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.478681 B = 7736.299881 C = 8056.324062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.252 3.748 10 O -0.577 6.577 11 C -0.144 4.144 12 C 0.044 3.956 13 N -0.516 5.516 14 C 0.042 3.958 15 C 0.089 3.911 16 H 0.077 0.923 17 C -0.153 4.153 18 C -0.146 4.146 19 C 0.106 3.894 20 H 0.066 0.934 21 C -0.153 4.153 22 C -0.179 4.179 23 C -0.164 4.164 24 O -0.346 6.346 25 C 0.060 3.940 26 H 0.266 0.734 27 H 0.376 0.624 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.043 0.957 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.586 -17.645 5.723 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.211 3.789 10 O -0.385 6.385 11 C -0.183 4.183 12 C -0.084 4.084 13 N -0.240 5.240 14 C -0.087 4.087 15 C 0.031 3.969 16 H 0.095 0.905 17 C -0.191 4.191 18 C -0.184 4.184 19 C 0.048 3.952 20 H 0.084 0.916 21 C -0.171 4.171 22 C -0.216 4.216 23 C -0.201 4.201 24 O -0.265 6.265 25 C -0.067 4.067 26 H 0.076 0.924 27 H 0.225 0.775 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.119 0.881 43 H 0.061 0.939 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.537 -18.303 5.053 19.157 hybrid contribution 0.486 1.929 1.112 2.279 sum 3.023 -16.375 6.165 17.756 Atomic orbital electron populations 1.69742 1.05913 1.27299 1.50412 1.25000 0.94978 0.99358 0.93778 0.86491 0.79780 0.82809 0.78279 1.20432 1.21148 1.19890 1.21559 0.93505 0.90786 1.51559 0.92195 1.19521 0.86861 0.90538 0.81934 1.86163 1.51288 1.56598 1.44449 1.23249 1.02600 0.91965 1.00489 1.22859 0.94705 0.96047 0.94775 1.63545 1.08638 1.20923 1.30911 1.22612 0.96621 0.94024 0.95443 1.22760 0.98497 0.90541 0.85134 0.90471 1.23184 1.01506 0.94682 0.99748 1.23252 1.02698 0.96861 0.95588 1.22452 0.94970 0.84033 0.93767 0.91618 1.22332 1.01921 0.98584 0.94303 1.22979 0.98707 0.95168 1.04711 1.22857 1.01316 1.01245 0.94727 1.88644 1.76474 1.23587 1.37837 1.22977 0.95066 0.90430 0.98271 0.92433 0.77549 0.90515 0.92807 0.91776 0.94898 0.94405 0.91187 0.90188 0.90469 0.90456 0.90255 0.87719 0.88844 0.88799 0.88873 0.88142 0.93863 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.25 10.75 55.43 0.60 -23.65 16 2 C 0.07 1.91 5.29 -17.82 -0.09 1.82 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -14.66 8.27 -34.44 -0.28 -14.95 16 8 H 0.06 1.63 7.79 -52.49 -0.41 1.22 16 9 C 0.25 6.47 0.87 -89.63 -0.08 6.39 16 10 O -0.58 -15.72 13.16 -35.23 -0.46 -16.18 16 11 C -0.14 -3.42 5.37 -24.91 -0.13 -3.55 16 12 C 0.04 0.90 6.13 -2.84 -0.02 0.89 16 13 N -0.52 -10.67 5.14 -231.26 -1.19 -11.86 16 14 C 0.04 0.70 4.07 -3.82 -0.02 0.68 16 15 C 0.09 1.29 3.53 -26.00 -0.09 1.19 16 16 H 0.08 1.17 7.06 -51.93 -0.37 0.80 16 17 C -0.15 -1.63 6.54 -24.78 -0.16 -1.79 16 18 C -0.15 -1.42 6.57 -24.48 -0.16 -1.58 16 19 C 0.11 1.27 3.60 -25.70 -0.09 1.18 16 20 H 0.07 0.79 7.97 -51.93 -0.41 0.37 16 21 C -0.15 -1.66 5.45 -90.61 -0.49 -2.15 16 22 C -0.18 -1.62 10.19 -26.69 -0.27 -1.89 16 23 C -0.16 -1.82 10.24 -26.69 -0.27 -2.09 16 24 O -0.35 -5.54 10.66 -35.23 -0.38 -5.91 16 25 C 0.06 1.36 5.86 -2.30 -0.01 1.35 16 26 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.38 10.21 7.56 45.56 0.34 10.56 16 28 H 0.08 1.93 7.53 -51.93 -0.39 1.54 16 29 H 0.05 1.29 8.04 -51.93 -0.42 0.88 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.03 0.60 6.95 -51.93 -0.36 0.24 16 32 H 0.04 0.61 7.96 -51.93 -0.41 0.19 16 33 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 36 H 0.08 0.71 7.95 -51.93 -0.41 0.30 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 1.07 8.00 -51.93 -0.42 0.65 16 39 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.04 0.95 7.70 -51.93 -0.40 0.55 16 44 H 0.07 1.63 8.14 -51.92 -0.42 1.21 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -29.14 346.36 -10.41 -39.56 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -7.00 Total: 11.46 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -2.18 Total: -14.50 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.59 Total: -35.51 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.84 Total: -22.09 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.14 -10.41 -39.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886265256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.705 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds