Wall clock time and date at job start Tue Mar 31 2020 06:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99497 * 2 1 4 4 H 1.48504 * 109.46902 * 266.80061 * 3 2 1 5 5 H 1.48493 * 109.47689 * 26.80152 * 3 2 1 6 6 H 1.48498 * 109.47085 * 146.80987 * 3 2 1 7 7 C 1.37874 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00231 * 354.26618 * 7 2 1 9 9 C 1.50700 * 119.99824 * 174.26303 * 7 2 1 10 10 O 1.42905 * 110.27485 * 324.98007 * 9 7 2 11 11 C 1.54603 * 110.39195 * 202.83512 * 9 7 2 12 12 C 1.54932 * 102.92108 * 219.08346 * 11 9 7 13 13 N 1.48537 * 103.22901 * 37.41609 * 12 11 9 14 14 C 1.46904 * 110.99833 * 200.28038 * 13 12 11 15 15 C 1.52994 * 109.47171 * 307.39117 * 14 13 12 16 16 H 1.09003 * 109.82140 * 59.11578 * 15 14 13 17 17 C 1.54380 * 109.83389 * 180.02562 * 15 14 13 18 18 C 1.55299 * 102.25767 * 140.87240 * 17 15 14 19 19 C 1.54950 * 100.93804 * 325.86941 * 18 17 15 20 20 H 1.09004 * 110.30647 * 277.52524 * 19 18 17 21 21 C 1.53005 * 110.31048 * 155.46202 * 19 18 17 22 22 C 1.52999 * 117.49382 * 248.62140 * 21 19 18 23 23 C 1.52999 * 117.49815 * 180.02562 * 21 19 18 24 24 O 1.43239 * 109.83198 * 298.13905 * 15 14 13 25 25 C 1.47905 * 105.81815 * 320.79173 * 13 12 11 26 26 H 0.96996 * 120.00568 * 0.02562 * 1 2 3 27 27 H 0.96693 * 113.99900 * 296.78496 * 10 9 7 28 28 H 1.08997 * 110.72091 * 337.44462 * 11 9 7 29 29 H 1.09003 * 110.71928 * 100.72584 * 11 9 7 30 30 H 1.09001 * 110.66714 * 278.98134 * 12 11 9 31 31 H 1.09001 * 110.66772 * 155.84798 * 12 11 9 32 32 H 1.09004 * 109.47125 * 67.39496 * 14 13 12 33 33 H 1.09008 * 109.46715 * 187.39167 * 14 13 12 34 34 H 1.09004 * 110.84786 * 259.06630 * 17 15 14 35 35 H 1.09000 * 110.84792 * 22.47591 * 17 15 14 36 36 H 1.09003 * 111.12898 * 83.78269 * 18 17 15 37 37 H 1.08997 * 111.12830 * 207.91238 * 18 17 15 38 38 H 1.09001 * 115.55008 * 34.32371 * 21 19 18 39 39 H 1.08999 * 117.50290 * 359.97438 * 22 21 19 40 40 H 1.08999 * 117.49687 * 145.02006 * 22 21 19 41 41 H 1.09001 * 117.49148 * 214.97447 * 23 21 19 42 42 H 1.08993 * 117.49991 * 359.97438 * 23 21 19 43 43 H 1.09003 * 109.91608 * 265.97978 * 25 13 12 44 44 H 1.08996 * 110.08161 * 144.77563 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5641 2.0074 -1.3979 5 1 1.4143 2.6713 0.6312 6 1 3.5112 1.4608 0.7664 7 6 2.0045 -1.1940 0.0005 8 1 1.4687 -2.1269 0.0944 9 6 3.5059 -1.1972 -0.1299 10 8 3.9302 -0.1406 -0.9936 11 6 3.9969 -2.5606 -0.6688 12 6 5.2912 -2.8092 0.1457 13 7 4.9527 -2.2799 1.4917 14 6 6.1682 -1.9840 2.2619 15 6 7.0768 -3.2149 2.2736 16 1 7.3400 -3.4897 1.2522 17 6 8.3570 -2.9132 3.0818 18 6 8.5913 -4.2487 3.8391 19 6 7.1317 -4.7043 4.0899 20 1 6.7260 -4.2066 4.9708 21 6 7.0721 -6.2232 4.2648 22 6 6.3835 -7.0343 3.1653 23 6 5.7009 -6.8514 4.5218 24 8 6.4076 -4.3068 2.9153 25 6 4.1630 -1.0519 1.2552 26 1 -0.4851 0.8400 -0.0004 27 1 3.6129 -0.2247 -1.9031 28 1 3.2614 -3.3405 -0.4720 29 1 4.2178 -2.4972 -1.7343 30 1 6.1281 -2.2593 -0.2846 31 1 5.5150 -3.8748 0.1966 32 1 6.6950 -1.1478 1.8023 33 1 5.8957 -1.7238 3.2848 34 1 9.1923 -2.6924 2.4172 35 1 8.1911 -2.0921 3.7792 36 1 9.1249 -4.9658 3.2153 37 1 9.1178 -4.0805 4.7785 38 1 7.9330 -6.6737 4.7589 39 1 5.9726 -6.4859 2.3177 40 1 6.7914 -8.0187 2.9358 41 1 5.6596 -7.7155 5.1850 42 1 4.8414 -6.1828 4.5667 43 1 4.8186 -0.1811 1.2656 44 1 3.3950 -0.9474 2.0214 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886265257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:01 Heat of formation + Delta-G solvation = -61.530647 kcal Electronic energy + Delta-G solvation = -23270.414886 eV Core-core repulsion = 19995.505418 eV Total energy + Delta-G solvation = -3274.909468 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.66 seconds Orbital eigenvalues (eV) -39.99327 -38.51946 -36.62152 -35.11835 -32.25795 -32.19392 -31.25506 -28.93116 -28.08796 -25.55942 -23.86265 -22.49103 -22.27520 -21.61394 -20.48550 -19.69132 -19.41449 -17.17419 -17.04798 -16.05206 -15.55864 -15.21506 -15.02538 -14.80723 -14.59567 -13.91581 -13.53714 -13.36197 -13.28436 -12.77719 -12.50918 -12.36669 -11.86523 -11.76227 -11.65992 -11.47576 -11.41252 -11.27874 -11.12910 -10.94074 -10.76195 -10.62378 -10.47272 -10.22325 -10.10582 -10.03903 -9.97305 -9.28589 -9.07895 -8.54140 -8.36970 -7.74737 -6.07625 -4.16424 3.50184 3.55978 3.68222 3.73959 3.80823 4.36041 4.48944 4.55623 4.57790 4.75326 4.92033 4.97272 5.04880 5.14062 5.21777 5.30010 5.36504 5.41550 5.42811 5.56628 5.59870 5.65646 5.68967 5.73552 5.81353 5.87543 5.89424 6.01639 6.05015 6.14549 6.21323 6.25723 6.30992 6.32483 6.60767 6.75324 6.94294 7.18703 7.22709 7.51225 7.65803 7.72238 8.26600 8.78278 8.96786 9.55151 11.02127 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025901 B = 0.004365 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.773841 B = 6412.411957 C = 6819.509866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.943 3.057 4 H -0.293 1.293 5 H -0.325 1.325 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.214 3.786 10 O -0.572 6.572 11 C -0.136 4.136 12 C 0.037 3.963 13 N -0.501 5.501 14 C 0.037 3.963 15 C 0.086 3.914 16 H 0.078 0.922 17 C -0.152 4.152 18 C -0.146 4.146 19 C 0.106 3.894 20 H 0.071 0.929 21 C -0.163 4.163 22 C -0.164 4.164 23 C -0.175 4.175 24 O -0.348 6.348 25 C 0.052 3.948 26 H 0.264 0.736 27 H 0.370 0.630 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.033 0.967 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.110 -9.399 6.461 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.779 3.221 4 H -0.220 1.220 5 H -0.256 1.256 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.174 3.826 10 O -0.379 6.379 11 C -0.174 4.174 12 C -0.091 4.091 13 N -0.225 5.225 14 C -0.092 4.092 15 C 0.028 3.972 16 H 0.096 0.904 17 C -0.190 4.190 18 C -0.184 4.184 19 C 0.048 3.952 20 H 0.088 0.912 21 C -0.181 4.181 22 C -0.201 4.201 23 C -0.212 4.212 24 O -0.267 6.267 25 C -0.076 4.076 26 H 0.073 0.927 27 H 0.217 0.783 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.051 0.949 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.740 -9.580 7.249 21.425 hybrid contribution 0.797 1.431 -0.800 1.823 sum 18.538 -8.149 6.448 21.252 Atomic orbital electron populations 1.69974 1.06748 1.27462 1.48782 1.25118 0.94840 1.00272 0.93049 0.85788 0.77985 0.80525 0.77848 1.22029 1.25645 1.19769 1.21354 0.88893 0.95114 1.52782 0.90266 1.20005 0.94115 0.82469 0.86014 1.86129 1.77531 1.50368 1.23915 1.23104 0.96047 1.00426 0.97817 1.23173 0.97130 0.99295 0.89492 1.64857 1.16270 1.26919 1.14481 1.22698 0.91521 0.95133 0.99834 1.22781 0.90438 0.87330 0.96680 0.90406 1.23160 0.98002 0.98224 0.99653 1.23239 0.97307 0.96847 1.01007 1.22370 0.90477 0.92610 0.89721 0.91161 1.22408 0.96822 0.93395 1.05465 1.22859 1.03478 1.00164 0.93623 1.22926 0.95821 1.02740 0.99710 1.88567 1.49046 1.49955 1.39098 1.23298 0.96419 0.89145 0.98731 0.92660 0.78273 0.90419 0.92214 0.95003 0.90995 0.94351 0.90738 0.90247 0.90361 0.90380 0.90236 0.87396 0.87312 0.89555 0.89288 0.88284 0.94872 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.96 55.43 0.77 -26.63 16 2 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.94 24.19 24.85 -169.99 -4.22 19.97 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.33 -8.50 7.11 56.52 0.40 -8.10 16 6 H -0.27 -6.91 5.72 56.52 0.32 -6.58 16 7 C -0.54 -15.17 8.56 -34.44 -0.29 -15.47 16 8 H 0.08 2.42 7.82 -52.49 -0.41 2.01 16 9 C 0.21 5.00 0.84 -90.41 -0.08 4.93 16 10 O -0.57 -12.96 8.57 -35.23 -0.30 -13.27 16 11 C -0.14 -2.73 6.33 -24.87 -0.16 -2.89 16 12 C 0.04 0.66 5.10 -1.90 -0.01 0.65 16 13 N -0.50 -9.70 5.31 -230.44 -1.22 -10.92 16 14 C 0.04 0.59 4.58 -3.83 -0.02 0.57 16 15 C 0.09 1.13 3.14 -26.01 -0.08 1.05 16 16 H 0.08 1.03 6.77 -51.93 -0.35 0.68 16 17 C -0.15 -1.50 6.54 -24.79 -0.16 -1.66 16 18 C -0.15 -1.31 6.56 -24.48 -0.16 -1.47 16 19 C 0.11 1.19 3.79 -25.70 -0.10 1.10 16 20 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.16 -1.66 5.71 -90.62 -0.52 -2.18 16 22 C -0.16 -1.82 9.89 -26.76 -0.26 -2.08 16 23 C -0.18 -1.88 10.24 -26.76 -0.27 -2.16 16 24 O -0.35 -5.00 9.05 -35.23 -0.32 -5.32 16 25 C 0.05 1.16 5.06 -2.75 -0.01 1.15 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.37 7.39 8.97 45.56 0.41 7.80 16 28 H 0.08 1.66 7.70 -51.93 -0.40 1.26 16 29 H 0.06 1.08 8.04 -51.93 -0.42 0.67 16 30 H 0.03 0.54 8.01 -51.93 -0.42 0.13 16 31 H 0.07 1.20 7.65 -51.93 -0.40 0.81 16 32 H 0.04 0.60 7.81 -51.93 -0.41 0.19 16 33 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.74 7.85 -51.93 -0.41 0.34 16 36 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.11 0.91 8.13 -51.93 -0.42 0.49 16 39 H 0.11 1.44 7.08 -51.93 -0.37 1.07 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.03 0.75 6.76 -51.93 -0.35 0.40 16 44 H 0.09 2.16 7.68 -51.93 -0.40 1.76 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -31.61 337.07 -9.36 -40.97 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.93 Total: 6.65 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.22 Total: -16.53 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.45 Total: -37.55 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.62 Total: -18.59 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -4.22 Total: 19.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.61 -9.36 -40.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886265257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.558 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.66 seconds