Wall clock time and date at job start Tue Mar 31 2020 06:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99557 * 2 1 4 4 H 1.48502 * 109.46908 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47573 * 300.00333 * 3 2 1 6 6 H 1.48502 * 109.47264 * 60.00651 * 3 2 1 7 7 C 1.37878 * 120.00403 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00172 * 359.97438 * 7 2 1 10 10 O 1.42906 * 110.62855 * 56.89066 * 9 7 2 11 11 C 1.55140 * 110.85657 * 293.68818 * 9 7 2 12 12 C 1.54906 * 101.65608 * 205.89227 * 11 9 7 13 13 N 1.47847 * 104.79562 * 37.06535 * 12 11 9 14 14 C 1.46894 * 111.00217 * 213.63704 * 13 12 11 15 15 C 1.52997 * 109.47247 * 290.84649 * 14 13 12 16 16 H 1.09002 * 110.41561 * 304.13986 * 15 14 13 17 17 C 1.54476 * 110.37331 * 181.83385 * 15 14 13 18 18 C 1.54686 * 104.08073 * 217.09585 * 17 15 14 19 19 C 1.54480 * 103.97706 * 0.13356 * 18 17 15 20 20 H 1.08999 * 110.37291 * 264.96283 * 19 18 17 21 21 C 1.52999 * 110.37136 * 142.73392 * 19 18 17 22 22 C 1.53002 * 117.49968 * 181.54755 * 21 19 18 23 23 C 1.53000 * 60.02940 * 107.50530 * 22 21 19 24 24 O 1.44424 * 110.37592 * 66.44903 * 15 14 13 25 25 C 1.47446 * 108.56348 * 335.90926 * 13 12 11 26 26 H 0.96996 * 120.00441 * 359.97438 * 1 2 3 27 27 H 0.96699 * 114.00063 * 303.10898 * 10 9 7 28 28 H 1.09001 * 110.98907 * 323.98244 * 11 9 7 29 29 H 1.08998 * 110.99380 * 87.79926 * 11 9 7 30 30 H 1.08995 * 110.37170 * 278.24048 * 12 11 9 31 31 H 1.08997 * 110.37710 * 155.89485 * 12 11 9 32 32 H 1.08998 * 109.47144 * 170.84121 * 14 13 12 33 33 H 1.09011 * 109.46919 * 50.84469 * 14 13 12 34 34 H 1.09001 * 110.51109 * 335.83550 * 17 15 14 35 35 H 1.09004 * 110.51393 * 98.40665 * 17 15 14 36 36 H 1.08998 * 110.61030 * 241.48905 * 18 17 15 37 37 H 1.08994 * 110.48766 * 118.72212 * 18 17 15 38 38 H 1.08999 * 115.55899 * 35.86560 * 21 19 18 39 39 H 1.09002 * 117.49918 * 0.02562 * 22 21 19 40 40 H 1.09002 * 117.49754 * 215.00713 * 22 21 19 41 41 H 1.09008 * 117.49673 * 107.47884 * 23 22 21 42 42 H 1.08999 * 117.49942 * 252.47315 * 23 22 21 43 43 H 1.09002 * 109.88831 * 120.39975 * 25 13 12 44 44 H 1.09006 * 109.88307 * 241.57949 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2513 -2.4991 -0.0005 10 8 0.3664 -2.5697 -1.1205 11 6 0.4712 -2.6866 1.3273 12 6 0.3707 -4.2299 1.4160 13 7 1.6606 -4.7232 0.8880 14 6 1.4856 -5.9958 0.1755 15 6 1.1347 -7.0974 1.1775 16 1 1.8955 -7.1600 1.9556 17 6 0.9909 -8.4554 0.4554 18 6 -0.1763 -9.1523 1.1933 19 6 -0.6000 -8.1298 2.2710 20 1 -0.1068 -8.3499 3.2177 21 6 -2.1197 -8.1413 2.4479 22 6 -2.7212 -7.1591 3.4550 23 6 -2.8984 -6.9194 1.9543 24 8 -0.1629 -6.8509 1.7618 25 6 2.2285 -3.6933 -0.0012 26 1 -0.4850 0.8400 0.0004 27 1 -0.2685 -1.8418 -1.1666 28 1 1.0323 -2.2828 2.1701 29 1 -0.5184 -2.2338 1.2662 30 1 -0.4540 -4.5923 0.8024 31 1 0.2401 -4.5428 2.4519 32 1 2.4110 -6.2541 -0.3393 33 1 0.6803 -5.8968 -0.5526 34 1 0.7444 -8.3048 -0.5957 35 1 1.9069 -9.0382 0.5521 36 1 0.1620 -10.0786 1.6578 37 1 -0.9999 -9.3469 0.5065 38 1 -2.5973 -9.1161 2.3488 39 1 -2.0343 -6.5044 3.9913 40 1 -3.5943 -7.4879 4.0188 41 1 -3.8881 -7.0908 1.5307 42 1 -2.3284 -6.1070 1.5037 43 1 3.2019 -3.3761 0.3731 44 1 2.3286 -4.0900 -1.0115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886265258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:10 Heat of formation + Delta-G solvation = -69.891672 kcal Electronic energy + Delta-G solvation = -23454.561953 eV Core-core repulsion = 20179.289924 eV Total energy + Delta-G solvation = -3275.272029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.82536 -38.12434 -36.46417 -34.53264 -32.09253 -32.01548 -30.95616 -28.49396 -27.89630 -25.45385 -24.02715 -22.37284 -21.97714 -20.98542 -20.33011 -19.84639 -19.31415 -17.07763 -16.42777 -15.95216 -15.46307 -15.01815 -14.84059 -14.76457 -14.09663 -13.91629 -13.64827 -13.26337 -12.99774 -12.41200 -12.12793 -11.83690 -11.70942 -11.57815 -11.38758 -11.35759 -11.26902 -11.16940 -10.86861 -10.81746 -10.62937 -10.42693 -10.35897 -10.19666 -10.07720 -10.01131 -9.77666 -9.44232 -9.17891 -8.56619 -8.00576 -7.52784 -6.16206 -4.23093 3.24600 3.33002 3.37578 3.78118 3.95512 4.34234 4.49371 4.56691 4.76893 4.88756 5.02404 5.03421 5.10824 5.19564 5.36577 5.42135 5.47577 5.60271 5.64817 5.73210 5.75612 5.83429 5.93992 5.95710 6.01278 6.06892 6.20442 6.27157 6.29307 6.34283 6.39990 6.49267 6.56121 6.77815 7.03035 7.10928 7.22798 7.52602 7.57527 7.79573 7.87719 7.91849 8.21309 8.78563 9.44895 9.59133 10.91049 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.004368 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.854173 B = 6408.221956 C = 7032.715163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.237 3.763 10 O -0.593 6.593 11 C -0.134 4.134 12 C 0.058 3.942 13 N -0.531 5.531 14 C 0.059 3.941 15 C 0.084 3.916 16 H 0.072 0.928 17 C -0.151 4.151 18 C -0.145 4.145 19 C 0.100 3.900 20 H 0.067 0.933 21 C -0.158 4.158 22 C -0.176 4.176 23 C -0.163 4.163 24 O -0.351 6.351 25 C 0.057 3.943 26 H 0.266 0.734 27 H 0.383 0.617 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 -16.571 3.867 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.080 0.920 9 C 0.196 3.804 10 O -0.403 6.403 11 C -0.173 4.173 12 C -0.069 4.069 13 N -0.255 5.255 14 C -0.070 4.070 15 C 0.026 3.974 16 H 0.090 0.910 17 C -0.189 4.189 18 C -0.183 4.183 19 C 0.043 3.957 20 H 0.085 0.915 21 C -0.176 4.176 22 C -0.213 4.213 23 C -0.200 4.200 24 O -0.270 6.270 25 C -0.070 4.070 26 H 0.076 0.924 27 H 0.234 0.766 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.128 0.872 43 H 0.096 0.904 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.083 -16.883 4.159 17.512 hybrid contribution -0.367 1.317 -0.517 1.462 sum -2.450 -15.566 3.643 16.173 Atomic orbital electron populations 1.69605 1.05979 1.27264 1.51139 1.25008 0.94964 0.99435 0.93832 0.86419 0.80160 0.83090 0.77602 1.19659 1.20918 1.20893 1.21674 0.93611 0.90762 1.50835 0.91960 1.19706 0.86234 0.91659 0.82795 1.86067 1.51549 1.53302 1.49400 1.23192 1.01559 0.92183 1.00357 1.22946 0.89265 0.96028 0.98693 1.63664 1.25175 1.02544 1.34088 1.22298 1.00159 0.90409 0.94135 1.23007 0.86205 0.93280 0.94957 0.90972 1.22991 0.98620 0.96450 1.00827 1.22933 0.98561 0.98560 0.98200 1.22361 0.92790 0.84410 0.96182 0.91491 1.22313 0.93234 0.95481 1.06572 1.22925 1.02738 1.02812 0.92822 1.22906 1.00521 0.99939 0.96625 1.89279 1.33286 1.27741 1.76686 1.22828 0.98617 0.91600 0.93972 0.92399 0.76554 0.92166 0.91151 0.94166 0.91982 0.90511 0.94055 0.90688 0.90767 0.90962 0.90734 0.87334 0.88519 0.89263 0.89432 0.87226 0.90419 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 10.69 55.43 0.59 -23.99 16 2 C 0.07 1.87 5.28 -17.82 -0.09 1.77 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -14.56 8.22 -34.44 -0.28 -14.84 16 8 H 0.06 1.70 7.53 -52.49 -0.40 1.30 16 9 C 0.24 6.06 0.85 -89.96 -0.08 5.98 16 10 O -0.59 -15.99 13.08 -35.23 -0.46 -16.45 16 11 C -0.13 -3.26 5.67 -24.59 -0.14 -3.39 16 12 C 0.06 1.23 5.09 -2.30 -0.01 1.21 16 13 N -0.53 -10.69 5.16 -231.26 -1.19 -11.89 16 14 C 0.06 0.99 4.33 -3.83 -0.02 0.98 16 15 C 0.08 1.18 3.46 -25.96 -0.09 1.09 16 16 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 17 C -0.15 -1.66 6.64 -25.07 -0.17 -1.82 16 18 C -0.14 -1.45 6.64 -25.07 -0.17 -1.62 16 19 C 0.10 1.19 3.64 -25.96 -0.09 1.10 16 20 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 21 C -0.16 -1.75 5.60 -90.58 -0.51 -2.26 16 22 C -0.18 -2.00 10.23 -26.73 -0.27 -2.28 16 23 C -0.16 -2.04 9.89 -26.70 -0.26 -2.31 16 24 O -0.35 -5.31 7.00 -35.23 -0.25 -5.56 16 25 C 0.06 1.29 6.21 -2.84 -0.02 1.27 16 26 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.38 10.54 6.98 45.56 0.32 10.86 16 28 H 0.06 1.50 8.05 -51.93 -0.42 1.08 16 29 H 0.07 1.81 7.76 -51.93 -0.40 1.40 16 30 H 0.04 0.88 7.24 -51.93 -0.38 0.51 16 31 H 0.06 1.27 7.67 -51.93 -0.40 0.87 16 32 H 0.08 1.17 8.03 -51.93 -0.42 0.75 16 33 H 0.04 0.77 7.85 -51.92 -0.41 0.36 16 34 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 38 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 42 H 0.11 1.68 7.08 -51.93 -0.37 1.32 16 43 H 0.08 1.74 7.63 -51.93 -0.40 1.34 16 44 H 0.04 0.98 7.48 -51.93 -0.39 0.59 16 LS Contribution 341.05 15.07 5.14 5.14 Total: -1.00 -28.28 341.05 -10.37 -38.65 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -6.98 Total: 13.22 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.20 Total: -15.12 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.60 Total: -35.88 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.71 Total: -22.01 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.28 -10.37 -38.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886265258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.241 kcal (2) G-P(sol) polarization free energy of solvation -28.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds