Wall clock time and date at job start Tue Mar 31 2020 06:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99901 * 2 1 4 4 H 1.48502 * 109.47238 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47238 * 119.99769 * 3 2 1 6 6 H 1.48506 * 109.46972 * 239.99807 * 3 2 1 7 7 C 1.37872 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00028 * 15.89759 * 7 2 1 9 9 C 1.50704 * 119.99706 * 195.89962 * 7 2 1 10 10 O 1.42895 * 110.27574 * 63.14409 * 9 7 2 11 11 C 1.54598 * 110.30725 * 300.94732 * 9 7 2 12 12 C 1.54933 * 102.92050 * 219.12568 * 11 9 7 13 13 N 1.48535 * 103.22895 * 37.42015 * 12 11 9 14 14 C 1.46898 * 110.99891 * 200.27827 * 13 12 11 15 15 C 1.52994 * 109.47162 * 287.38730 * 14 13 12 16 16 H 1.09007 * 109.86666 * 58.99942 * 15 14 13 17 17 C 1.54102 * 109.88022 * 180.02562 * 15 14 13 18 18 C 1.54810 * 104.18523 * 121.45810 * 17 15 14 19 19 C 1.54995 * 102.09382 * 20.88185 * 18 17 15 20 20 H 1.09007 * 110.61818 * 81.63281 * 19 18 17 21 21 C 1.52993 * 110.61883 * 204.47478 * 19 18 17 22 22 C 1.53005 * 117.50243 * 248.74832 * 21 19 18 23 23 C 1.53005 * 117.50188 * 180.08807 * 21 19 18 24 24 O 1.43737 * 109.88340 * 297.83904 * 15 14 13 25 25 C 1.47903 * 105.81429 * 320.78855 * 13 12 11 26 26 H 0.96997 * 120.00321 * 175.31897 * 1 2 3 27 27 H 0.96706 * 114.00513 * 306.51661 * 10 9 7 28 28 H 1.08999 * 110.72370 * 337.48644 * 11 9 7 29 29 H 1.09000 * 110.72235 * 100.77163 * 11 9 7 30 30 H 1.08997 * 110.67249 * 278.97834 * 12 11 9 31 31 H 1.09009 * 110.66493 * 155.85055 * 12 11 9 32 32 H 1.08998 * 109.47201 * 47.39631 * 14 13 12 33 33 H 1.09003 * 109.46968 * 167.39019 * 14 13 12 34 34 H 1.09003 * 110.49047 * 240.13221 * 17 15 14 35 35 H 1.09000 * 110.48529 * 2.78183 * 17 15 14 36 36 H 1.08998 * 110.90568 * 139.08039 * 18 17 15 37 37 H 1.08998 * 110.90659 * 262.68365 * 18 17 15 38 38 H 1.09005 * 115.55288 * 34.41744 * 21 19 18 39 39 H 1.08999 * 117.49564 * 359.97438 * 22 21 19 40 40 H 1.08994 * 117.50577 * 145.02098 * 22 21 19 41 41 H 1.08994 * 117.49777 * 214.98230 * 23 21 19 42 42 H 1.09003 * 117.49402 * 359.97319 * 23 21 19 43 43 H 1.09007 * 109.91817 * 265.97472 * 25 13 12 44 44 H 1.09003 * 110.08122 * 144.77518 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1030 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 1.4955 -2.1115 -0.2552 9 6 3.4683 -1.2188 0.3581 10 8 3.6555 -0.7905 1.7084 11 6 4.2721 -0.3193 -0.6088 12 6 5.5699 -1.1331 -0.8408 13 7 5.0881 -2.5376 -0.8799 14 6 6.1848 -3.4780 -0.6137 15 6 7.1162 -3.5316 -1.8263 16 1 7.5160 -2.5382 -2.0304 17 6 8.2705 -4.5164 -1.5573 18 6 8.1516 -5.5599 -2.6947 19 6 7.3324 -4.7875 -3.7598 20 1 7.9805 -4.1316 -4.3412 21 6 6.5897 -5.7601 -4.6780 22 6 7.0534 -5.8518 -6.1332 23 6 5.7298 -5.1621 -5.7933 24 8 6.3986 -4.0178 -2.9729 25 6 4.0426 -2.6341 0.1618 26 1 -0.4850 -0.8372 -0.0686 27 1 3.2538 0.0661 1.9087 28 1 3.7317 -0.1798 -1.5450 29 1 4.4969 0.6412 -0.1451 30 1 6.2675 -0.9885 -0.0159 31 1 6.0318 -0.8584 -1.7893 32 1 6.7447 -3.1453 0.2602 33 1 5.7749 -4.4705 -0.4263 34 1 9.2304 -4.0027 -1.6097 35 1 8.1452 -4.9949 -0.5860 36 1 9.1351 -5.8289 -3.0801 37 1 7.6128 -6.4448 -2.3560 38 1 6.2343 -6.6754 -4.2045 39 1 7.8873 -5.2188 -6.4365 40 1 7.0028 -6.8271 -6.6172 41 1 4.8090 -5.6840 -6.0537 42 1 5.6929 -4.0755 -5.8726 43 1 4.4796 -2.9902 1.0948 44 1 3.2537 -3.3133 -0.1615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886265259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:24 Heat of formation + Delta-G solvation = -56.803891 kcal Electronic energy + Delta-G solvation = -23052.543146 eV Core-core repulsion = 19777.838646 eV Total energy + Delta-G solvation = -3274.704500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -39.85152 -38.50134 -36.81761 -35.02649 -32.39024 -32.15626 -31.22151 -28.91170 -27.99349 -25.47213 -23.53203 -22.55859 -22.40993 -21.23042 -20.56509 -20.29294 -19.41721 -17.69650 -16.72576 -16.09252 -15.78639 -15.28618 -14.96728 -14.87247 -14.59310 -13.72937 -13.67112 -13.38372 -13.26203 -12.92863 -12.46245 -12.24393 -11.97098 -11.78401 -11.72199 -11.63540 -11.37682 -11.28096 -11.13678 -10.89325 -10.75606 -10.61904 -10.40561 -10.17953 -10.13335 -9.99654 -9.52240 -9.47693 -9.17565 -8.80351 -8.13595 -7.80313 -6.53196 -4.21008 3.20393 3.34619 3.42468 3.51120 4.08570 4.31101 4.34790 4.47598 4.51323 4.75862 4.84894 4.90654 4.97660 5.11386 5.15693 5.25375 5.36257 5.40285 5.48948 5.52298 5.55827 5.62775 5.70395 5.78263 5.81316 5.83370 5.89114 5.91977 5.96617 6.01308 6.14106 6.17325 6.24378 6.24882 6.56734 6.76382 7.01186 7.06360 7.10145 7.49897 7.66985 7.92551 8.29170 8.79493 8.94827 9.51166 10.83463 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023671 B = 0.004265 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.577752 B = 6563.774613 C = 7117.557289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.029 3.971 3 Si 1.053 2.947 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.608 4.608 8 H 0.063 0.937 9 C 0.213 3.787 10 O -0.591 6.591 11 C -0.161 4.161 12 C 0.040 3.960 13 N -0.502 5.502 14 C 0.049 3.951 15 C 0.085 3.915 16 H 0.065 0.935 17 C -0.153 4.153 18 C -0.145 4.145 19 C 0.101 3.899 20 H 0.065 0.935 21 C -0.148 4.148 22 C -0.178 4.178 23 C -0.165 4.165 24 O -0.339 6.339 25 C 0.067 3.933 26 H 0.271 0.729 27 H 0.362 0.638 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.035 0.965 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.031 -8.951 -7.254 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.177 4.177 3 Si 0.883 3.117 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.646 4.646 8 H 0.082 0.918 9 C 0.173 3.827 10 O -0.400 6.400 11 C -0.200 4.200 12 C -0.088 4.088 13 N -0.226 5.226 14 C -0.080 4.080 15 C 0.027 3.973 16 H 0.082 0.918 17 C -0.192 4.192 18 C -0.182 4.182 19 C 0.043 3.957 20 H 0.083 0.917 21 C -0.166 4.166 22 C -0.215 4.215 23 C -0.202 4.202 24 O -0.258 6.258 25 C -0.061 4.061 26 H 0.081 0.919 27 H 0.212 0.788 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.053 0.947 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 17.697 -7.990 -7.718 20.894 hybrid contribution 0.471 -1.041 0.754 1.369 sum 18.168 -9.031 -6.964 21.450 Atomic orbital electron populations 1.70811 1.06841 1.31092 1.44302 1.25839 0.96403 1.02452 0.93045 0.84127 0.74567 0.75889 0.77103 1.21588 1.21294 1.20052 1.22428 0.93802 0.96492 1.51876 0.91835 1.19787 0.94662 0.89323 0.78894 1.86364 1.80287 1.41395 1.31925 1.23695 0.96081 0.97767 1.02430 1.23184 0.97041 0.89255 0.99314 1.64761 1.09062 1.03213 1.45573 1.22455 0.92872 0.98234 0.94399 1.22684 0.90947 0.96567 0.87101 0.91760 1.23005 0.98972 0.97231 0.99965 1.23112 1.00741 0.98815 0.95561 1.22604 0.89835 0.91072 0.92210 0.91742 1.22176 1.04194 1.00518 0.89688 1.22988 0.98950 1.02516 0.97034 1.22865 0.94401 1.00965 1.01923 1.89124 1.33066 1.69115 1.34475 1.22693 0.93782 0.98056 0.91546 0.91896 0.78848 0.89591 0.92632 0.94663 0.91221 0.93914 0.90592 0.90809 0.90350 0.90553 0.90448 0.87475 0.88894 0.88674 0.88696 0.88304 0.94652 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.70 55.43 0.76 -26.59 16 2 C 0.03 0.82 5.37 -17.82 -0.10 0.72 16 3 Si 1.05 24.80 23.32 -169.99 -3.96 20.83 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.10 5.76 56.52 0.33 -5.77 16 6 H -0.27 -6.06 5.98 56.52 0.34 -5.72 16 7 C -0.61 -17.36 8.58 -34.44 -0.30 -17.66 16 8 H 0.06 1.96 7.60 -52.49 -0.40 1.56 16 9 C 0.21 5.29 0.96 -90.41 -0.09 5.20 16 10 O -0.59 -14.69 12.95 -35.23 -0.46 -15.15 16 11 C -0.16 -3.61 3.96 -24.87 -0.10 -3.71 16 12 C 0.04 0.76 5.91 -1.90 -0.01 0.75 16 13 N -0.50 -9.97 5.16 -230.45 -1.19 -11.16 16 14 C 0.05 0.78 4.18 -3.83 -0.02 0.77 16 15 C 0.09 1.17 3.46 -26.16 -0.09 1.08 16 16 H 0.06 0.89 7.36 -51.92 -0.38 0.50 16 17 C -0.15 -1.56 6.64 -25.20 -0.17 -1.73 16 18 C -0.14 -1.38 6.59 -24.72 -0.16 -1.55 16 19 C 0.10 1.17 3.49 -25.68 -0.09 1.08 16 20 H 0.06 0.71 7.99 -51.93 -0.41 0.29 16 21 C -0.15 -1.59 5.47 -90.62 -0.50 -2.09 16 22 C -0.18 -1.56 10.19 -26.69 -0.27 -1.84 16 23 C -0.16 -1.80 10.25 -26.69 -0.27 -2.08 16 24 O -0.34 -5.28 10.80 -35.23 -0.38 -5.66 16 25 C 0.07 1.50 6.13 -2.75 -0.02 1.48 16 26 H 0.27 8.26 8.73 -40.82 -0.36 7.91 16 27 H 0.36 8.61 5.62 45.56 0.26 8.87 16 28 H 0.09 2.05 6.73 -51.93 -0.35 1.70 16 29 H 0.06 1.18 5.68 -51.93 -0.29 0.88 16 30 H 0.04 0.64 7.81 -51.93 -0.41 0.23 16 31 H 0.07 1.22 7.79 -51.92 -0.40 0.82 16 32 H 0.04 0.64 7.83 -51.93 -0.41 0.23 16 33 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.75 7.70 -51.93 -0.40 0.35 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.74 7.96 -51.93 -0.41 0.33 16 38 H 0.11 1.13 8.01 -51.93 -0.42 0.71 16 39 H 0.09 0.75 8.10 -51.93 -0.42 0.32 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.04 0.77 7.59 -51.93 -0.39 0.37 16 44 H 0.08 1.95 7.39 -51.93 -0.38 1.56 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -31.43 334.64 -9.41 -40.84 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -7.05 Total: 11.40 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.17 Total: -19.56 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.43 Total: -37.75 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.84 Total: -20.81 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -3.96 Total: 20.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.43 -9.41 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886265259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.966 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds