Wall clock time and date at job start Tue Mar 31 2020 05:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00075 * 2 1 4 4 H 1.48502 * 109.47497 * 269.72712 * 3 2 1 5 5 H 1.48504 * 109.47037 * 29.73185 * 3 2 1 6 6 H 1.48508 * 109.46967 * 149.72844 * 3 2 1 7 7 C 1.37876 * 119.99507 * 179.73090 * 2 1 3 8 8 H 1.07993 * 120.00396 * 0.27166 * 7 2 1 9 9 C 1.50703 * 119.99655 * 180.27205 * 7 2 1 10 10 C 1.53001 * 109.47101 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47180 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47010 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00344 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99843 * 179.97438 * 12 11 10 15 15 C 1.47148 * 120.98322 * 354.55807 * 14 12 11 16 16 C 1.53704 * 108.16371 * 129.42867 * 15 14 12 17 17 O 1.42963 * 109.14866 * 52.53741 * 16 15 14 18 18 C 1.42959 * 114.16828 * 297.29096 * 17 16 15 19 19 C 1.47148 * 120.98029 * 174.83448 * 14 12 11 20 20 H 1.09007 * 109.68409 * 110.75515 * 19 14 12 21 21 C 1.53002 * 109.68681 * 350.23845 * 19 14 12 22 22 C 1.52993 * 109.47423 * 182.47578 * 21 19 14 23 23 C 1.53004 * 117.50007 * 244.89506 * 22 21 19 24 24 C 1.52998 * 60.00084 * 252.51250 * 23 22 21 25 25 H 0.96997 * 119.99977 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.46956 * 299.99885 * 9 7 2 27 27 H 1.08998 * 109.47016 * 60.00084 * 9 7 2 28 28 H 1.09000 * 109.47186 * 300.00029 * 10 9 7 29 29 H 1.08998 * 109.47218 * 60.00084 * 10 9 7 30 30 H 1.09000 * 109.47181 * 300.00151 * 11 10 9 31 31 H 1.08998 * 109.46880 * 59.99995 * 11 10 9 32 32 H 1.09003 * 109.67904 * 249.21339 * 15 14 12 33 33 H 1.09000 * 109.67947 * 9.75766 * 15 14 12 34 34 H 1.09000 * 109.66131 * 292.56979 * 16 15 14 35 35 H 1.09006 * 109.48872 * 172.39716 * 16 15 14 36 36 H 1.09001 * 109.50822 * 302.65452 * 18 17 16 37 37 H 1.09000 * 109.51696 * 182.50222 * 18 17 16 38 38 H 1.09003 * 109.47062 * 302.47653 * 21 19 14 39 39 H 1.09005 * 109.46735 * 62.47526 * 21 19 14 40 40 H 1.09000 * 115.55073 * 30.60287 * 22 21 19 41 41 H 1.08999 * 117.49615 * 0.02562 * 23 22 21 42 42 H 1.08998 * 117.50182 * 145.01746 * 23 22 21 43 43 H 1.08999 * 117.49703 * 252.50838 * 24 23 22 44 44 H 1.08999 * 117.49913 * 107.49191 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5025 2.0431 -1.4000 5 1 1.4437 2.6543 0.6944 6 1 3.5439 1.4417 0.7058 7 6 2.0044 -1.1941 0.0056 8 1 1.4644 -2.1293 0.0056 9 6 3.5114 -1.1941 0.0118 10 6 4.0214 -2.6366 0.0166 11 6 5.5514 -2.6367 0.0223 12 6 6.0536 -4.0574 0.0276 13 8 5.2655 -4.9793 0.0265 14 7 7.3788 -4.3038 0.0326 15 6 8.3534 -3.2078 -0.0867 16 6 9.3814 -3.3554 1.0463 17 8 9.9134 -4.6822 1.0271 18 6 8.9439 -5.7050 1.2676 19 6 7.8934 -5.6772 0.1515 20 1 8.3499 -5.9810 -0.7906 21 6 6.7470 -6.6289 0.4991 22 6 7.2972 -8.0447 0.6821 23 6 6.8434 -9.1134 -0.3144 24 6 6.3154 -9.1329 1.1214 25 1 -0.4850 0.8400 0.0004 26 1 3.8784 -0.6823 -0.8779 27 1 3.8711 -0.6782 0.9021 28 1 3.6544 -3.1488 0.9060 29 1 3.6617 -3.1521 -0.8739 30 1 5.9180 -2.1246 -0.8674 31 1 5.9114 -2.1210 0.9125 32 1 8.8559 -3.2669 -1.0522 33 1 7.8413 -2.2498 0.0030 34 1 8.8986 -3.1706 2.0060 35 1 10.1886 -2.6374 0.9008 36 1 8.4595 -5.5288 2.2280 37 1 9.4361 -6.6775 1.2802 38 1 6.2708 -6.3018 1.4234 39 1 6.0144 -6.6253 -0.3081 40 1 8.3187 -8.1073 1.0572 41 1 6.1532 -8.8076 -1.1007 42 1 7.5664 -9.8791 -0.5953 43 1 6.6911 -9.9115 1.7853 44 1 5.2775 -8.8401 1.2800 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886472380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:45 Heat of formation + Delta-G solvation = -55.294880 kcal Electronic energy + Delta-G solvation = -22592.680844 eV Core-core repulsion = 19318.041780 eV Total energy + Delta-G solvation = -3274.639065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.77223 -38.43071 -37.59490 -34.87245 -34.47495 -32.90668 -31.89535 -29.17849 -28.05522 -26.61616 -24.33707 -23.32269 -22.51111 -21.98314 -20.56841 -20.00133 -19.02801 -17.11491 -16.76910 -16.63320 -16.26446 -15.78064 -15.47953 -15.16678 -14.90837 -14.35271 -14.34068 -13.97313 -13.51873 -13.13893 -13.00110 -12.64213 -12.24029 -12.16766 -11.90365 -11.72133 -11.64126 -11.53442 -11.43280 -11.16800 -10.94121 -10.80714 -10.45444 -10.30508 -9.97639 -9.95834 -9.75151 -9.68715 -9.18970 -8.91151 -8.59961 -8.52300 -6.01915 -3.99806 2.73909 2.78298 3.30199 3.37399 3.39833 3.47953 3.69322 4.39848 4.44347 4.45753 4.63897 4.72064 4.80342 4.83246 4.86594 4.93720 5.02228 5.11553 5.24883 5.31286 5.34629 5.41694 5.47242 5.51585 5.52092 5.56693 5.58740 5.75382 5.89166 6.01621 6.04311 6.10827 6.26471 6.53153 6.56362 6.67057 6.78969 6.89808 7.30602 7.38234 7.43492 7.81201 8.29912 8.57854 9.04730 9.60042 11.11823 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.003815 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.326474 B = 7337.491300 C = 8544.560636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.086 4.086 11 C -0.142 4.142 12 C 0.518 3.482 13 O -0.524 6.524 14 N -0.624 5.624 15 C 0.073 3.927 16 C 0.046 3.954 17 O -0.381 6.381 18 C 0.050 3.950 19 C 0.118 3.882 20 H 0.077 0.923 21 C -0.083 4.083 22 C -0.164 4.164 23 C -0.180 4.180 24 C -0.178 4.178 25 H 0.262 0.738 26 H 0.010 0.990 27 H 0.015 0.985 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.338 -11.695 1.596 25.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.124 4.124 11 C -0.182 4.182 12 C 0.308 3.692 13 O -0.400 6.400 14 N -0.360 5.360 15 C -0.051 4.051 16 C -0.032 4.032 17 O -0.300 6.300 18 C -0.027 4.027 19 C 0.015 3.985 20 H 0.095 0.905 21 C -0.121 4.121 22 C -0.182 4.182 23 C -0.217 4.217 24 C -0.215 4.215 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 21.923 -12.101 1.564 25.090 hybrid contribution 0.225 1.059 0.015 1.083 sum 22.148 -11.042 1.580 24.798 Atomic orbital electron populations 1.69922 1.06310 1.26808 1.51293 1.25053 0.94744 0.99152 0.94692 0.86763 0.80297 0.83654 0.78422 1.20340 1.21431 1.19075 1.21155 0.89508 0.94540 1.50490 0.90953 1.19603 0.97347 0.92138 0.96045 1.21269 0.89067 0.99582 1.02522 1.21935 1.00753 0.92119 1.03411 1.21170 0.80774 0.92638 0.74600 1.90679 1.55159 1.45434 1.48692 1.48342 1.05947 1.06870 1.74874 1.22526 0.91253 0.91441 0.99832 1.23083 0.97416 0.84885 0.97815 1.87950 1.34471 1.14785 1.92763 1.23168 0.90385 0.91964 0.97203 1.21866 0.95372 0.82172 0.99108 0.90487 1.21763 0.96053 0.89523 1.04728 1.22586 0.99002 0.92048 1.04604 1.23018 1.03779 1.01721 0.93186 1.22923 0.99745 1.01174 0.97642 0.92778 0.97141 0.96716 0.92078 0.92084 0.89460 0.89485 0.90498 0.88151 0.92394 0.87628 0.92511 0.87769 0.90886 0.87666 0.88202 0.88692 0.89192 0.89095 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.09 -1.76 4.44 -26.73 -0.12 -1.88 16 11 C -0.14 -2.16 4.07 -27.88 -0.11 -2.28 16 12 C 0.52 7.85 7.52 -10.99 -0.08 7.77 16 13 O -0.52 -9.50 11.73 5.56 0.07 -9.43 16 14 N -0.62 -7.50 3.01 -164.50 -0.50 -7.99 16 15 C 0.07 0.66 6.58 -3.32 -0.02 0.63 16 16 C 0.05 0.38 7.00 37.52 0.26 0.64 16 17 O -0.38 -3.90 10.74 -35.23 -0.38 -4.27 16 18 C 0.05 0.48 5.82 37.31 0.22 0.70 16 19 C 0.12 1.30 3.22 -67.42 -0.22 1.09 16 20 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.08 -1.01 3.50 -26.73 -0.09 -1.11 16 22 C -0.16 -1.60 5.51 -90.62 -0.50 -2.10 16 23 C -0.18 -1.70 10.18 -26.73 -0.27 -1.97 16 24 C -0.18 -1.72 10.25 -26.73 -0.27 -1.99 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.01 0.24 7.57 -51.92 -0.39 -0.16 16 27 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 28 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 29 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 30 H 0.09 1.18 7.80 -51.93 -0.41 0.77 16 31 H 0.09 1.17 7.88 -51.93 -0.41 0.77 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.80 6.04 -51.93 -0.31 0.49 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.82 6.47 -51.93 -0.34 0.48 16 38 H 0.07 1.02 7.42 -51.93 -0.39 0.64 16 39 H 0.11 1.56 5.87 -51.93 -0.30 1.26 16 40 H 0.10 0.82 6.15 -51.93 -0.32 0.50 16 41 H 0.09 0.97 8.03 -51.93 -0.42 0.55 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 342.99 15.07 5.17 5.17 Total: -1.00 -33.06 342.99 -8.76 -41.82 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.47 Total: -0.18 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -1.76 Total: -14.55 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.28 Total: -35.50 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.31 Total: -13.71 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.06 -8.76 -41.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886472380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.478 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds