Wall clock time and date at job start Tue Mar 31 2020 06:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47352 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99901 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00338 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 11 16 16 C 1.52998 * 115.55170 * 179.91518 * 15 14 12 17 17 H 1.09004 * 109.47912 * 205.56389 * 16 15 14 18 18 C 1.53089 * 109.47937 * 325.58161 * 16 15 14 19 19 C 1.53181 * 109.16431 * 177.59135 * 18 16 15 20 20 C 1.53181 * 109.03553 * 303.02210 * 19 18 16 21 21 C 1.53089 * 109.16435 * 56.97966 * 20 19 18 22 22 O 1.42897 * 109.48011 * 85.52525 * 16 15 14 23 23 C 1.53002 * 117.49796 * 34.20763 * 15 14 12 24 24 C 1.52999 * 117.49664 * 325.58364 * 15 14 12 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 29 29 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 30 30 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 31 31 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 32 32 H 0.97001 * 119.99493 * 0.02562 * 14 12 11 33 33 H 1.09004 * 109.52533 * 297.50073 * 18 16 15 34 34 H 1.09009 * 109.52422 * 57.68875 * 18 16 15 35 35 H 1.08996 * 109.54049 * 62.89156 * 19 18 16 36 36 H 1.09003 * 109.54208 * 183.06509 * 19 18 16 37 37 H 1.08997 * 109.52163 * 176.88980 * 20 19 18 38 38 H 1.08999 * 109.52005 * 297.01052 * 20 19 18 39 39 H 1.09001 * 109.48265 * 62.36951 * 21 20 19 40 40 H 1.08994 * 109.48164 * 182.41051 * 21 20 19 41 41 H 1.09003 * 117.49518 * 359.97438 * 23 15 14 42 42 H 1.08995 * 117.49812 * 145.02140 * 23 15 14 43 43 H 1.09006 * 117.49837 * 214.97700 * 24 15 14 44 44 H 1.09000 * 117.49989 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4595 -6.1326 -0.0005 13 8 3.6519 -5.9110 -0.0001 14 7 2.0103 -7.4033 -0.0004 15 6 2.9622 -8.5168 -0.0004 16 6 2.3418 -9.9154 0.0018 17 1 3.0424 -10.6231 0.4452 18 6 1.0475 -9.8984 0.8190 19 6 0.4014 -11.2863 0.7666 20 6 0.1601 -11.6701 -0.6966 21 6 1.4888 -11.6186 -1.4553 22 8 2.0510 -10.3097 -1.3405 23 6 4.2744 -8.3244 0.7626 24 6 4.2722 -8.3263 -0.7675 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.8719 -3.6044 -0.8906 29 1 2.8719 -3.6044 0.8894 30 1 0.8533 -5.0451 0.8886 31 1 0.8539 -5.0446 -0.8913 32 1 1.0566 -7.5805 -0.0011 33 1 1.2733 -9.6406 1.8538 34 1 0.3619 -9.1615 0.4004 35 1 1.0658 -12.0155 1.2300 36 1 -0.5483 -11.2669 1.3012 37 1 -0.2487 -12.6793 -0.7459 38 1 -0.5441 -10.9696 -1.1455 39 1 2.1781 -12.3487 -1.0312 40 1 1.3163 -11.8492 -2.5066 41 1 4.4295 -7.3691 1.2641 42 1 4.6959 -9.1942 1.2663 43 1 4.6923 -9.1974 -1.2703 44 1 4.4256 -7.3726 -1.2726 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887085959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:44 Heat of formation + Delta-G solvation = -77.751277 kcal Electronic energy + Delta-G solvation = -22257.468757 eV Core-core repulsion = 18981.855910 eV Total energy + Delta-G solvation = -3275.612847 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.62807 -39.23040 -36.59087 -34.12851 -34.03050 -32.91670 -31.79551 -31.21566 -27.80240 -25.77781 -24.19857 -23.89685 -22.29647 -21.35956 -20.79879 -19.81874 -19.46327 -17.60376 -16.50108 -16.31671 -16.02888 -15.40742 -15.23145 -15.02189 -14.76172 -14.42108 -14.01004 -13.93751 -13.42848 -13.35281 -13.02550 -12.71064 -12.23429 -11.85612 -11.70543 -11.68757 -11.49189 -11.38021 -11.26616 -10.97837 -10.75901 -10.71543 -10.57741 -10.50719 -10.36334 -9.74377 -9.63940 -9.50738 -9.20564 -8.96336 -8.54974 -8.29730 -5.95531 -3.96757 2.84261 3.10325 3.36349 3.36484 3.42122 3.47250 4.04453 4.28033 4.37797 4.44309 4.51207 4.54236 4.74112 4.79582 4.83785 5.05561 5.14951 5.19820 5.27847 5.37800 5.40556 5.43644 5.51608 5.55937 5.66118 5.71556 5.74365 5.75518 5.77736 5.88804 6.12372 6.29345 6.39569 6.65409 6.76111 6.90554 6.96451 7.19503 7.65027 7.73894 7.86644 8.05455 8.48650 8.50420 9.10417 9.67056 11.16029 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032199 B = 0.002928 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.380138 B = 9560.437746 C =10057.631301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.093 4.093 11 C -0.138 4.138 12 C 0.513 3.487 13 O -0.532 6.532 14 N -0.702 5.702 15 C 0.100 3.900 16 C 0.130 3.870 17 H 0.072 0.928 18 C -0.151 4.151 19 C -0.122 4.122 20 C -0.158 4.158 21 C 0.060 3.940 22 O -0.371 6.371 23 C -0.170 4.170 24 C -0.163 4.163 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.402 0.598 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.504 -27.258 0.716 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.131 4.131 11 C -0.178 4.178 12 C 0.302 3.698 13 O -0.408 6.408 14 N -0.354 5.354 15 C 0.012 3.988 16 C 0.072 3.928 17 H 0.089 0.911 18 C -0.189 4.189 19 C -0.160 4.160 20 C -0.196 4.196 21 C -0.017 4.017 22 O -0.290 6.290 23 C -0.208 4.208 24 C -0.202 4.202 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.238 0.762 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.230 -26.834 0.553 26.868 hybrid contribution -0.271 0.600 0.214 0.692 sum 0.959 -26.234 0.767 26.263 Atomic orbital electron populations 1.69966 1.06037 1.26508 1.51268 1.25024 0.94856 0.99246 0.95418 0.86593 0.79910 0.83433 0.78085 1.20690 1.19833 1.21271 1.21277 0.93187 0.91023 1.50060 0.92583 1.19132 0.93981 0.91479 0.97094 1.21431 0.98598 0.91440 1.01669 1.21854 0.98174 0.94077 1.03714 1.21265 0.90526 0.83411 0.74592 1.90625 1.17008 1.84702 1.48492 1.45523 1.09254 1.04461 1.76207 1.20392 0.84767 0.85937 1.07734 1.21584 0.95394 0.92303 0.83567 0.91056 1.22194 0.97414 0.98032 1.01266 1.21592 1.01290 0.96531 0.96541 1.22213 0.98733 1.02451 0.96222 1.22581 0.93330 0.84628 1.01119 1.88035 1.82371 1.32754 1.25884 1.23482 0.97562 1.04048 0.95754 1.23287 0.98254 1.04041 0.94569 0.93090 0.96658 0.96617 0.92693 0.92707 0.89439 0.89384 0.76171 0.90196 0.90831 0.91773 0.91137 0.90883 0.90823 0.93296 0.88750 0.86592 0.89171 0.88988 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 10 C -0.09 -2.04 4.44 -26.73 -0.12 -2.16 16 11 C -0.14 -2.33 5.70 -27.88 -0.16 -2.49 16 12 C 0.51 8.37 7.53 -10.99 -0.08 8.28 16 13 O -0.53 -10.25 11.46 5.56 0.06 -10.19 16 14 N -0.70 -9.02 5.39 -47.61 -0.26 -9.28 16 15 C 0.10 1.20 2.73 -131.82 -0.36 0.84 16 16 C 0.13 1.23 2.81 -26.69 -0.08 1.15 16 17 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16 18 C -0.15 -1.18 5.00 -26.59 -0.13 -1.31 16 19 C -0.12 -0.76 6.03 -26.54 -0.16 -0.92 16 20 C -0.16 -0.98 6.14 -26.59 -0.16 -1.15 16 21 C 0.06 0.43 6.84 37.20 0.25 0.69 16 22 O -0.37 -3.87 10.32 -35.23 -0.36 -4.23 16 23 C -0.17 -2.12 9.37 -26.73 -0.25 -2.37 16 24 C -0.16 -2.17 9.35 -26.73 -0.25 -2.42 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 29 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.40 4.25 6.58 -40.82 -0.27 3.98 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.59 6.30 -51.92 -0.33 0.27 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.12 1.75 6.36 -51.93 -0.33 1.42 16 42 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.11 1.83 6.39 -51.93 -0.33 1.49 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -33.04 348.32 -9.18 -42.22 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.54 Total: 1.02 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -2.05 Total: -15.39 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.48 Total: -35.89 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.30 Total: -14.42 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.04 -9.18 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887085959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.533 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds