Wall clock time and date at job start Tue Mar 31 2020 06:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48499 * 109.46797 * 269.99542 * 3 2 1 5 5 H 1.48500 * 109.47411 * 29.99747 * 3 2 1 6 6 H 1.48501 * 109.47147 * 150.00132 * 3 2 1 7 7 C 1.37882 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99834 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46857 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46965 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47300 * 180.02562 * 11 10 9 13 13 O 1.21284 * 120.00109 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00137 * 179.97438 * 12 11 10 15 15 C 1.46506 * 119.99873 * 179.97438 * 14 12 11 16 16 C 1.52997 * 115.54842 * 179.91321 * 15 14 12 17 17 H 1.09006 * 109.47677 * 90.56120 * 16 15 14 18 18 C 1.53098 * 109.48356 * 330.53164 * 16 15 14 19 19 C 1.53169 * 109.16499 * 182.40878 * 18 16 15 20 20 C 1.53181 * 109.03880 * 56.97533 * 19 18 16 21 21 C 1.53086 * 109.16330 * 303.02060 * 20 19 18 22 22 O 1.42900 * 109.48230 * 210.58413 * 16 15 14 23 23 C 1.53002 * 117.49900 * 34.21102 * 15 14 12 24 24 C 1.52993 * 117.50155 * 325.58558 * 15 14 12 25 25 H 0.97002 * 120.00081 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47103 * 59.99686 * 9 7 2 27 27 H 1.09004 * 109.46994 * 300.00018 * 9 7 2 28 28 H 1.09000 * 109.47058 * 60.00755 * 10 9 7 29 29 H 1.08987 * 109.47609 * 299.99938 * 10 9 7 30 30 H 1.09004 * 109.46930 * 60.00393 * 11 10 9 31 31 H 1.09000 * 109.47312 * 300.00337 * 11 10 9 32 32 H 0.96995 * 120.00018 * 0.27749 * 14 12 11 33 33 H 1.09004 * 109.51737 * 302.31337 * 18 16 15 34 34 H 1.09001 * 109.52158 * 62.49844 * 18 16 15 35 35 H 1.09006 * 109.54508 * 297.11090 * 19 18 16 36 36 H 1.09000 * 109.62035 * 176.88925 * 19 18 16 37 37 H 1.09004 * 109.51931 * 183.11343 * 20 19 18 38 38 H 1.09000 * 109.57146 * 62.96088 * 20 19 18 39 39 H 1.09000 * 109.48110 * 297.62491 * 21 20 19 40 40 H 1.09000 * 109.49469 * 177.59584 * 21 20 19 41 41 H 1.09001 * 117.49429 * 359.97438 * 23 15 14 42 42 H 1.09000 * 117.49848 * 145.01656 * 23 15 14 43 43 H 1.08996 * 117.50200 * 214.97916 * 24 15 14 44 44 H 1.09005 * 117.50016 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4596 -6.1325 0.0018 13 8 3.6521 -5.9109 0.0022 14 7 2.0104 -7.4032 0.0030 15 6 2.9625 -8.5167 0.0030 16 6 2.3421 -9.9153 0.0065 17 1 2.2021 -10.2533 -1.0204 18 6 0.9878 -9.8714 0.7190 19 6 0.4011 -11.2853 0.7713 20 6 1.3972 -12.2139 1.4727 21 6 2.7356 -12.1674 0.7311 22 8 3.2103 -10.8200 0.6918 23 6 4.2752 -8.3238 0.7650 24 6 4.2720 -8.3266 -0.7650 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8720 -3.6043 -0.8893 30 1 0.8534 -5.0451 -0.8887 31 1 0.8540 -5.0446 0.8914 32 1 1.0568 -7.5804 -0.0007 33 1 1.1218 -9.4948 1.7331 34 1 0.3098 -9.2156 0.1725 35 1 0.2207 -11.6430 -0.2424 36 1 -0.5374 -11.2718 1.3256 37 1 1.0118 -13.2335 1.4653 38 1 1.5396 -11.8858 2.5023 39 1 2.6005 -12.5350 -0.2861 40 1 3.4612 -12.7934 1.2504 41 1 4.4305 -7.3682 1.2659 42 1 4.6970 -9.1933 1.2690 43 1 4.6917 -9.1980 -1.2676 44 1 4.4250 -7.3732 -1.2708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887085960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:48 Heat of formation + Delta-G solvation = -76.562236 kcal Electronic energy + Delta-G solvation = -22214.672256 eV Core-core repulsion = 18939.110969 eV Total energy + Delta-G solvation = -3275.561286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.64867 -39.27206 -36.50670 -34.19665 -34.11928 -32.82798 -31.78865 -31.22321 -27.82907 -25.89812 -24.07257 -23.92227 -22.35148 -21.34945 -20.69115 -19.82172 -19.49689 -17.67507 -16.53742 -16.21548 -15.91444 -15.52296 -15.26142 -15.10493 -14.75183 -14.42456 -14.10234 -13.90621 -13.46381 -13.34500 -12.93206 -12.77523 -12.24527 -11.98544 -11.78617 -11.59246 -11.44934 -11.29882 -11.19417 -10.94584 -10.80575 -10.70784 -10.59333 -10.51602 -10.25946 -9.76118 -9.65308 -9.51985 -9.22238 -8.97883 -8.53367 -8.30764 -5.96523 -3.97781 2.83098 2.90468 3.35865 3.41581 3.46573 3.59682 3.96168 4.23275 4.42130 4.45051 4.50515 4.56031 4.76105 4.80171 4.88271 5.06806 5.14716 5.21818 5.32813 5.37149 5.39638 5.41414 5.53403 5.60296 5.65898 5.71497 5.72317 5.73241 5.90407 5.92408 6.22845 6.26647 6.48821 6.59844 6.74321 6.89657 6.94762 7.17952 7.60609 7.72533 7.85132 8.04327 8.46494 8.48769 9.09392 9.66146 11.15028 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038950 B = 0.002815 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.700759 B = 9945.810662 C =10479.668485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.138 4.138 12 C 0.514 3.486 13 O -0.528 6.528 14 N -0.704 5.704 15 C 0.091 3.909 16 C 0.132 3.868 17 H 0.067 0.933 18 C -0.152 4.152 19 C -0.122 4.122 20 C -0.158 4.158 21 C 0.062 3.938 22 O -0.370 6.370 23 C -0.159 4.159 24 C -0.171 4.171 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.401 0.599 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 -27.284 0.696 27.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.132 4.132 11 C -0.178 4.178 12 C 0.302 3.698 13 O -0.404 6.404 14 N -0.357 5.357 15 C 0.004 3.996 16 C 0.074 3.926 17 H 0.085 0.915 18 C -0.190 4.190 19 C -0.159 4.159 20 C -0.195 4.195 21 C -0.015 4.015 22 O -0.289 6.289 23 C -0.197 4.197 24 C -0.209 4.209 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.237 0.763 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.119 0.881 43 H 0.108 0.892 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.316 -26.925 0.789 26.969 hybrid contribution -0.460 0.691 -0.119 0.839 sum 0.856 -26.234 0.670 26.257 Atomic orbital electron populations 1.69960 1.06044 1.26527 1.51262 1.25021 0.94854 0.99253 0.95403 0.86594 0.79911 0.83422 0.78102 1.20677 1.21268 1.19828 1.21275 0.93195 0.91013 1.50079 0.92574 1.19132 0.93973 0.91481 0.97094 1.21434 0.98614 0.91413 1.01713 1.21861 0.98147 0.94032 1.03734 1.21274 0.90571 0.83271 0.74657 1.90639 1.17000 1.84630 1.48150 1.45506 1.09107 1.04468 1.76645 1.20348 0.84894 0.85793 1.08593 1.21298 0.88788 0.87299 0.95219 0.91506 1.22204 0.96540 0.97721 1.02562 1.21584 0.98673 0.94637 1.01032 1.22204 0.96189 1.00331 1.00820 1.22581 0.95782 0.83487 0.99648 1.87937 1.45799 1.17973 1.77178 1.23287 0.97743 1.03791 0.94886 1.23395 0.98154 1.03636 0.95706 0.93080 0.96645 0.96619 0.92673 0.92675 0.89378 0.89375 0.76278 0.90265 0.90703 0.91742 0.91139 0.90871 0.90871 0.93177 0.88674 0.87345 0.88145 0.89203 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 10 C -0.09 -2.02 4.44 -26.73 -0.12 -2.14 16 11 C -0.14 -2.27 5.70 -27.88 -0.16 -2.43 16 12 C 0.51 8.23 7.53 -10.99 -0.08 8.14 16 13 O -0.53 -10.18 11.46 5.55 0.06 -10.11 16 14 N -0.70 -8.69 5.39 -47.61 -0.26 -8.95 16 15 C 0.09 1.11 3.10 -131.82 -0.41 0.70 16 16 C 0.13 1.25 2.98 -26.68 -0.08 1.17 16 17 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 18 C -0.15 -1.18 4.71 -26.59 -0.13 -1.31 16 19 C -0.12 -0.76 6.03 -26.55 -0.16 -0.92 16 20 C -0.16 -0.95 6.14 -26.59 -0.16 -1.12 16 21 C 0.06 0.42 6.84 37.20 0.25 0.68 16 22 O -0.37 -3.67 8.77 -35.23 -0.31 -3.98 16 23 C -0.16 -2.19 9.05 -26.73 -0.24 -2.44 16 24 C -0.17 -2.28 9.42 -26.73 -0.25 -2.54 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.05 1.24 8.10 -51.94 -0.42 0.82 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.40 3.82 6.52 -40.82 -0.27 3.55 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.50 6.59 -51.93 -0.34 0.16 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.11 1.78 6.36 -51.93 -0.33 1.45 16 42 H 0.10 1.29 7.03 -51.93 -0.36 0.93 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.11 1.76 6.39 -51.93 -0.33 1.42 16 LS Contribution 346.22 15.07 5.22 5.22 Total: -1.00 -32.87 346.22 -9.17 -42.04 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.51 Total: 0.81 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -2.09 Total: -15.66 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.48 Total: -35.46 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.25 Total: -14.09 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.87 -9.17 -42.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887085960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.521 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds