Wall clock time and date at job start Tue Mar 31 2020 06:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99873 * 2 1 4 4 H 1.48499 * 109.47295 * 269.99751 * 3 2 1 5 5 H 1.48507 * 109.47213 * 29.99811 * 3 2 1 6 6 H 1.48500 * 109.47589 * 149.99726 * 3 2 1 7 7 C 1.37879 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99722 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00146 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47259 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47218 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.47144 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99787 * 359.97438 * 12 11 10 14 14 N 1.34770 * 119.99969 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99895 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47247 * 180.02562 * 15 14 12 17 17 H 1.09005 * 110.55009 * 307.88233 * 16 15 14 18 18 C 1.54991 * 110.61968 * 184.99971 * 16 15 14 19 19 C 1.54815 * 102.09123 * 204.47442 * 18 16 15 20 20 C 1.54097 * 104.18567 * 20.88199 * 19 18 16 21 21 H 1.09001 * 109.87850 * 242.45155 * 20 19 18 22 22 C 1.53006 * 109.87859 * 121.45506 * 20 19 18 23 23 C 1.53000 * 117.49776 * 179.97438 * 22 20 19 24 24 C 1.52997 * 117.49537 * 248.62271 * 22 20 19 25 25 O 1.43742 * 107.29880 * 2.02795 * 20 19 18 26 26 H 0.96998 * 120.00085 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46668 * 60.00351 * 9 7 2 28 28 H 1.08997 * 109.47076 * 300.00570 * 9 7 2 29 29 H 1.09001 * 109.47029 * 59.99699 * 10 9 7 30 30 H 1.09002 * 109.46993 * 300.00129 * 10 9 7 31 31 H 1.08991 * 109.47174 * 59.99598 * 11 10 9 32 32 H 1.09002 * 109.46928 * 299.99782 * 11 10 9 33 33 H 0.96999 * 119.99994 * 0.02562 * 14 12 11 34 34 H 1.09003 * 109.47137 * 60.00500 * 15 14 12 35 35 H 1.08997 * 109.47547 * 300.00143 * 15 14 12 36 36 H 1.09003 * 110.90494 * 86.28176 * 18 16 15 37 37 H 1.08998 * 110.93827 * 322.68831 * 18 16 15 38 38 H 1.09004 * 110.48409 * 262.20530 * 19 18 16 39 39 H 1.08993 * 110.48634 * 139.56200 * 19 18 16 40 40 H 1.09002 * 115.56020 * 34.30399 * 22 20 19 41 41 H 1.08990 * 117.49990 * 359.97438 * 23 22 20 42 42 H 1.09004 * 117.49237 * 214.97568 * 23 22 20 43 43 H 1.08999 * 117.49685 * 145.02116 * 24 22 20 44 44 H 1.08999 * 117.52022 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0217 -2.6364 0.0001 11 6 5.5517 -2.6364 0.0001 12 6 6.0540 -4.0573 -0.0004 13 8 5.2659 -4.9791 -0.0003 14 7 7.3791 -4.3035 -0.0010 15 6 7.8674 -5.6847 -0.0009 16 6 9.3975 -5.6847 -0.0010 17 1 9.7801 -5.0580 -0.8066 18 6 9.9433 -7.1298 -0.1273 19 6 11.3470 -7.0034 0.5132 20 6 11.2514 -5.7368 1.3856 21 1 11.9547 -4.9855 1.0265 22 6 11.5611 -6.0844 2.8431 23 6 11.5158 -4.9470 3.8656 24 6 10.4101 -6.0052 3.8481 25 8 9.9059 -5.2430 1.2762 26 1 -0.4850 0.8400 -0.0004 27 1 3.8752 -0.6796 0.8895 28 1 3.8746 -0.6807 -0.8904 29 1 3.6579 -3.1505 -0.8896 30 1 3.6586 -3.1501 0.8903 31 1 5.9149 -2.1225 0.8900 32 1 5.9150 -2.1227 -0.8899 33 1 8.0094 -3.5662 -0.0007 34 1 7.5037 -6.1987 -0.8906 35 1 7.5045 -6.1984 0.8893 36 1 10.0184 -7.4271 -1.1733 37 1 9.3227 -7.8308 0.4309 38 1 12.1081 -6.8795 -0.2572 39 1 11.5651 -7.8756 1.1294 40 1 12.3065 -6.8655 2.9922 41 1 11.2658 -3.9512 3.4998 42 1 12.2312 -4.9803 4.6873 43 1 10.3985 -6.7342 4.6583 44 1 9.4323 -5.7052 3.4713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887475172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:01 Heat of formation + Delta-G solvation = -80.620197 kcal Electronic energy + Delta-G solvation = -21578.922677 eV Core-core repulsion = 18303.185424 eV Total energy + Delta-G solvation = -3275.737253 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39528 -39.30768 -36.92615 -34.73074 -34.17516 -32.59209 -32.05910 -30.53026 -28.39963 -26.16237 -23.66161 -22.68833 -22.37788 -21.73017 -20.70855 -20.38757 -19.73617 -17.08976 -17.05886 -16.49478 -16.08123 -16.01679 -15.73389 -15.40280 -14.97796 -14.19478 -14.05790 -13.76749 -13.59215 -13.09486 -12.68704 -12.61334 -12.38241 -12.21025 -11.98522 -11.87025 -11.69016 -11.61059 -11.51375 -11.20382 -10.92815 -10.74491 -10.55801 -10.41981 -9.97913 -9.94830 -9.79798 -9.65544 -9.37319 -9.08961 -9.01949 -8.47587 -5.97356 -3.94866 2.92475 3.17369 3.34285 3.34881 3.41375 3.44814 3.50054 4.07219 4.21540 4.43233 4.48981 4.50385 4.64550 4.68036 4.79611 4.88431 5.00801 5.08673 5.18269 5.19928 5.35641 5.36057 5.41491 5.48798 5.53499 5.59335 5.62585 5.66244 5.66986 5.74977 5.83682 6.00689 6.16876 6.44854 6.56581 6.61756 6.74606 6.97448 7.42588 7.50624 7.60528 7.86591 8.45522 8.63158 9.09652 9.64832 11.16400 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026716 B = 0.002683 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.813608 B =10431.850212 C =10946.000915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.087 4.087 11 C -0.141 4.141 12 C 0.513 3.487 13 O -0.537 6.537 14 N -0.737 5.737 15 C 0.128 3.872 16 C 0.065 3.935 17 H 0.077 0.923 18 C -0.146 4.146 19 C -0.148 4.148 20 C 0.106 3.894 21 H 0.072 0.928 22 C -0.164 4.164 23 C -0.176 4.176 24 C -0.164 4.164 25 O -0.361 6.361 26 H 0.262 0.738 27 H 0.015 0.985 28 H 0.011 0.989 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.401 0.599 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.690 -13.173 2.029 32.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.125 4.125 11 C -0.181 4.181 12 C 0.300 3.700 13 O -0.413 6.413 14 N -0.390 5.390 15 C 0.004 3.996 16 C 0.008 3.992 17 H 0.095 0.905 18 C -0.184 4.184 19 C -0.185 4.185 20 C 0.048 3.952 21 H 0.090 0.910 22 C -0.182 4.182 23 C -0.213 4.213 24 C -0.201 4.201 25 O -0.281 6.281 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.235 0.765 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.129 0.871 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 28.832 -13.610 2.192 31.958 hybrid contribution 0.930 1.125 -0.141 1.466 sum 29.762 -12.485 2.051 32.339 Atomic orbital electron populations 1.69927 1.06305 1.26757 1.51463 1.25057 0.94747 0.99157 0.94737 0.86755 0.80340 0.83628 0.78389 1.20372 1.21475 1.19020 1.21176 0.89569 0.94539 1.50306 0.90937 1.19609 0.97280 0.92231 0.96091 1.21261 0.89276 0.99478 1.02512 1.21860 1.00640 0.91923 1.03679 1.21160 0.81353 0.92651 0.74801 1.90691 1.55223 1.46771 1.48631 1.46040 1.07658 1.08050 1.77273 1.21311 0.90554 0.84714 1.03068 1.23394 0.94012 0.94839 0.86999 0.90502 1.23082 0.96275 0.96886 1.02189 1.22958 0.97587 0.98662 0.99320 1.22161 0.84834 0.94565 0.93640 0.91012 1.22520 1.02993 1.02168 0.90562 1.22946 1.02329 0.95020 1.01007 1.22890 0.95240 1.01682 1.00260 1.88941 1.27491 1.75596 1.36055 0.92825 0.96650 0.97115 0.92127 0.92096 0.89360 0.89437 0.76487 0.90252 0.90783 0.89833 0.89894 0.90552 0.90101 0.87098 0.88571 0.89038 0.89224 0.87494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.72 13.96 55.43 0.77 -27.94 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -15.37 9.66 -34.44 -0.33 -15.70 16 8 H 0.07 2.34 7.99 -52.49 -0.42 1.92 16 9 C -0.01 -0.36 4.04 -27.89 -0.11 -0.47 16 10 C -0.09 -1.86 4.44 -26.73 -0.12 -1.98 16 11 C -0.14 -2.26 5.70 -27.88 -0.16 -2.42 16 12 C 0.51 8.21 7.83 -10.99 -0.09 8.13 16 13 O -0.54 -10.84 15.98 5.56 0.09 -10.75 16 14 N -0.74 -8.72 5.56 -60.29 -0.33 -9.05 16 15 C 0.13 1.33 5.42 -4.04 -0.02 1.31 16 16 C 0.07 0.51 3.37 -25.68 -0.09 0.42 16 17 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 18 C -0.15 -0.89 6.59 -24.72 -0.16 -1.06 16 19 C -0.15 -0.81 6.64 -25.20 -0.17 -0.98 16 20 C 0.11 0.75 3.78 -26.16 -0.10 0.66 16 21 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 22 C -0.16 -1.17 5.55 -90.62 -0.50 -1.67 16 23 C -0.18 -1.34 10.22 -26.70 -0.27 -1.61 16 24 C -0.16 -1.37 9.88 -26.71 -0.26 -1.63 16 25 O -0.36 -3.33 9.28 -35.23 -0.33 -3.66 16 26 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 27 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 28 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 29 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 30 H 0.06 1.38 8.10 -51.93 -0.42 0.95 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.40 3.80 8.47 -40.82 -0.35 3.46 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.41 7.58 -51.93 -0.39 0.01 16 40 H 0.11 0.63 7.96 -51.93 -0.41 0.22 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.11 1.10 7.06 -51.93 -0.37 0.73 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -34.61 357.56 -9.35 -43.96 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.78 Total: -0.13 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -2.48 Total: -15.20 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.44 Total: -37.00 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.24 Total: -14.41 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.61 -9.35 -43.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887475172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.664 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds