Wall clock time and date at job start Tue Mar 31 2020 05:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99788 * 2 1 4 4 H 1.48501 * 109.46687 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47453 * 299.99818 * 3 2 1 6 6 H 1.48493 * 109.46984 * 60.00353 * 3 2 1 7 7 C 1.37875 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99643 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47067 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47179 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47095 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00081 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99993 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00088 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47189 * 179.97438 * 15 14 12 17 17 C 1.52999 * 115.54862 * 180.02562 * 16 15 14 18 18 O 1.42903 * 112.85030 * 164.08931 * 17 16 15 19 19 C 1.53778 * 113.61560 * 295.27869 * 17 16 15 20 20 C 1.54052 * 86.98326 * 140.02217 * 19 17 16 21 21 C 1.53773 * 87.07695 * 334.56942 * 20 19 17 22 22 C 1.52993 * 117.50125 * 325.67401 * 16 15 14 23 23 C 1.53004 * 117.49820 * 34.33441 * 16 15 14 24 24 H 0.97006 * 120.00020 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47495 * 60.00041 * 9 7 2 26 26 H 1.08996 * 109.47071 * 300.00003 * 9 7 2 27 27 H 1.09001 * 109.46848 * 60.00264 * 10 9 7 28 28 H 1.08996 * 109.47235 * 299.99973 * 10 9 7 29 29 H 1.09001 * 109.46793 * 60.00501 * 11 10 9 30 30 H 1.08996 * 109.47236 * 300.00243 * 11 10 9 31 31 H 0.96998 * 120.00359 * 0.02562 * 14 12 11 32 32 H 1.09004 * 109.47197 * 60.00501 * 15 14 12 33 33 H 1.08996 * 109.47377 * 300.00146 * 15 14 12 34 34 H 0.96700 * 114.00311 * 180.02562 * 18 17 16 35 35 H 1.08995 * 113.62020 * 254.61273 * 19 17 16 36 36 H 1.09004 * 113.61517 * 25.51927 * 19 17 16 37 37 H 1.09003 * 113.61948 * 220.01825 * 20 19 17 38 38 H 1.09001 * 113.61644 * 89.12155 * 20 19 17 39 39 H 1.09004 * 113.61925 * 270.87629 * 21 20 19 40 40 H 1.09011 * 113.61159 * 139.97609 * 21 20 19 41 41 H 1.08999 * 117.50121 * 215.00178 * 22 16 15 42 42 H 1.08998 * 117.49845 * 0.02562 * 22 16 15 43 43 H 1.09000 * 117.49777 * 359.97320 * 23 16 15 44 44 H 1.08997 * 117.49978 * 144.99294 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4802 -4.9871 -0.0033 12 6 2.4594 -6.1325 -0.0037 13 8 3.6518 -5.9110 -0.0031 14 7 2.0102 -7.4032 -0.0047 15 6 2.9621 -8.5167 -0.0056 16 6 2.1971 -9.8417 -0.0061 17 6 3.0626 -11.1034 -0.0064 18 8 2.3322 -12.2775 0.3542 19 6 3.9072 -11.2706 -1.2805 20 6 5.0444 -11.7612 -0.3644 21 6 4.3867 -10.9423 0.7587 22 6 0.8736 -9.8936 0.7597 23 6 0.8730 -9.8928 -0.7711 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5563 -0.8920 26 1 0.6240 -2.5574 0.8880 27 1 2.8718 -3.6051 0.8873 28 1 2.8718 -3.6036 -0.8926 29 1 0.8533 -5.0443 -0.8932 30 1 0.8538 -5.0454 0.8868 31 1 1.0565 -7.5805 -0.0056 32 1 3.5888 -8.4598 0.8844 33 1 3.5888 -8.4583 -0.8955 34 1 2.8638 -13.0853 0.3597 35 1 3.5291 -12.0364 -1.9578 36 1 4.1279 -10.3298 -1.7848 37 1 6.0286 -11.3931 -0.6545 38 1 5.0292 -12.8366 -0.1872 39 1 4.7382 -9.9119 0.8112 40 1 4.3953 -11.4433 1.7268 41 1 0.6194 -10.8265 1.2628 42 1 0.5476 -8.9836 1.2634 43 1 0.5468 -8.9822 -1.2737 44 1 0.6185 -10.8251 -1.2750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887537954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:43 Heat of formation + Delta-G solvation = -55.805066 kcal Electronic energy + Delta-G solvation = -21898.597717 eV Core-core repulsion = 18623.936529 eV Total energy + Delta-G solvation = -3274.661188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93194 -39.36958 -37.22316 -34.81461 -34.18276 -33.54327 -31.99632 -28.72936 -27.33035 -26.15370 -25.34034 -23.49993 -22.58441 -20.91132 -20.58633 -19.88764 -19.10750 -17.37410 -16.86556 -16.47651 -16.04436 -15.58133 -15.44388 -15.00951 -14.44312 -14.34583 -14.20457 -14.06100 -13.54633 -13.15878 -13.01023 -12.56244 -12.41503 -12.25256 -11.78241 -11.66745 -11.36018 -11.32284 -11.25240 -11.08866 -10.81270 -10.74558 -10.58384 -10.50225 -10.17143 -9.78619 -9.68774 -9.65493 -9.25621 -8.98981 -8.96364 -8.30813 -5.96308 -3.97532 2.93129 3.13520 3.33404 3.34741 3.41954 3.47832 3.76825 4.05556 4.20939 4.24475 4.42185 4.47519 4.50803 4.67779 4.80565 5.01126 5.20284 5.29287 5.32271 5.39850 5.44205 5.46060 5.50845 5.58285 5.59022 5.65757 5.68430 5.74329 5.74764 5.76081 5.94981 5.99318 6.27375 6.46755 6.74841 6.95313 7.18332 7.21540 7.57788 7.73165 7.85737 8.04699 8.44954 8.48955 9.09905 9.66424 11.15267 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040081 B = 0.002614 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.416308 B =10707.276873 C =11172.637190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.513 3.487 13 O -0.537 6.537 14 N -0.741 5.741 15 C 0.160 3.840 16 C -0.124 4.124 17 C 0.156 3.844 18 O -0.539 6.539 19 C -0.165 4.165 20 C -0.148 4.148 21 C -0.171 4.171 22 C -0.162 4.162 23 C -0.165 4.165 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.399 0.601 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.379 0.621 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.721 -27.835 -0.491 28.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.301 3.699 13 O -0.413 6.413 14 N -0.397 5.397 15 C 0.037 3.963 16 C -0.125 4.125 17 C 0.114 3.886 18 O -0.344 6.344 19 C -0.203 4.203 20 C -0.186 4.186 21 C -0.209 4.209 22 C -0.198 4.198 23 C -0.202 4.202 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.235 0.765 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.227 0.773 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.967 -27.117 -0.444 27.409 hybrid contribution 0.417 0.325 -0.063 0.533 sum 4.384 -26.792 -0.507 27.153 Atomic orbital electron populations 1.69978 1.06034 1.26411 1.51352 1.25027 0.94860 0.99266 0.95427 0.86537 0.80235 0.83767 0.77508 1.19684 1.21052 1.21045 1.21314 0.93230 0.91010 1.49933 0.92525 1.19139 0.93981 0.91483 0.97130 1.21443 0.98627 0.91502 1.01693 1.21851 0.98153 0.94093 1.03770 1.21263 0.90429 0.83564 0.74621 1.90674 1.17330 1.84735 1.48588 1.46241 1.10156 1.05727 1.77526 1.20618 0.91080 0.82279 1.02373 1.21324 0.89465 0.93498 1.08170 1.21283 0.88551 0.84426 0.94315 1.86425 1.39805 1.16959 1.91260 1.23752 0.96542 1.02772 0.97216 1.22935 0.99037 0.99719 0.96888 1.23807 0.96268 1.02278 0.98530 1.23041 0.98536 1.03816 0.94453 1.23051 0.98750 1.03572 0.94823 0.93137 0.96609 0.96591 0.92700 0.92699 0.89353 0.89348 0.76478 0.90866 0.91092 0.77257 0.90777 0.88784 0.90630 0.90234 0.88398 0.90662 0.87613 0.88593 0.88437 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.09 -2.06 4.44 -26.73 -0.12 -2.18 16 11 C -0.14 -2.31 5.70 -27.88 -0.16 -2.47 16 12 C 0.51 8.30 7.83 -10.99 -0.09 8.22 16 13 O -0.54 -10.78 15.98 5.56 0.09 -10.69 16 14 N -0.74 -8.90 4.99 -60.30 -0.30 -9.20 16 15 C 0.16 1.75 4.72 -4.04 -0.02 1.74 16 16 C -0.12 -1.12 2.12 -154.51 -0.33 -1.44 16 17 C 0.16 1.22 1.59 -89.81 -0.14 1.07 16 18 O -0.54 -4.07 12.22 -35.23 -0.43 -4.50 16 19 C -0.17 -1.15 7.37 -25.78 -0.19 -1.34 16 20 C -0.15 -0.88 7.76 -25.78 -0.20 -1.08 16 21 C -0.17 -1.26 7.20 -25.93 -0.19 -1.44 16 22 C -0.16 -1.42 9.18 -26.70 -0.25 -1.66 16 23 C -0.16 -1.40 9.35 -26.69 -0.25 -1.65 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 28 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.40 3.90 5.58 -40.82 -0.23 3.67 16 32 H 0.07 0.86 6.74 -51.93 -0.35 0.51 16 33 H 0.07 0.82 7.24 -51.93 -0.38 0.44 16 34 H 0.38 1.53 8.32 45.56 0.38 1.91 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.73 7.14 -51.93 -0.37 0.36 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.35 7.79 -51.93 -0.40 -0.06 16 39 H 0.10 0.81 5.95 -51.93 -0.31 0.50 16 40 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 41 H 0.11 0.97 7.40 -51.93 -0.38 0.59 16 42 H 0.10 0.81 7.01 -51.93 -0.36 0.45 16 43 H 0.10 0.79 7.01 -51.93 -0.36 0.43 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -33.83 351.71 -8.64 -42.47 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.54 Total: 1.80 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -2.47 Total: -15.76 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.44 Total: -35.74 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.34 Total: -15.20 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.83 -8.64 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887537954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.338 kcal (2) G-P(sol) polarization free energy of solvation -33.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds