Wall clock time and date at job start Tue Mar 31 2020 06:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.87035 * 2 1 4 4 C 1.54406 * 109.88294 * 238.83409 * 2 1 3 5 5 C 1.53475 * 103.78274 * 243.37832 * 4 2 1 6 6 C 1.52385 * 116.30481 * 250.78715 * 5 4 2 7 7 C 1.54043 * 86.73995 * 216.57024 * 6 5 4 8 8 N 1.46501 * 113.56939 * 138.94753 * 7 6 5 9 9 C 1.34772 * 119.99991 * 155.00005 * 8 7 6 10 10 O 1.21283 * 119.99897 * 359.97438 * 9 8 7 11 11 C 1.50697 * 120.00110 * 179.97438 * 9 8 7 12 12 C 1.53000 * 109.47259 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.46951 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00174 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99843 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99722 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99754 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47300 * 90.00206 * 17 15 13 19 19 H 1.48509 * 109.46832 * 210.00029 * 17 15 13 20 20 H 1.48501 * 109.47180 * 329.99579 * 17 15 13 21 21 C 1.52578 * 116.38989 * 148.52540 * 5 4 2 22 22 C 1.53663 * 103.67706 * 19.60886 * 5 4 2 23 23 O 1.43858 * 109.88051 * 121.00799 * 2 1 3 24 24 H 1.08998 * 109.47345 * 300.44504 * 1 2 3 25 25 H 1.09001 * 109.46900 * 60.44533 * 1 2 3 26 26 H 1.08998 * 109.47004 * 180.44401 * 1 2 3 27 27 H 1.08993 * 109.47368 * 179.55536 * 3 2 1 28 28 H 1.08997 * 109.47096 * 299.55487 * 3 2 1 29 29 H 1.08998 * 109.47391 * 59.55433 * 3 2 1 30 30 H 1.09004 * 110.56253 * 124.79695 * 4 2 1 31 31 H 1.09009 * 110.55964 * 1.95445 * 4 2 1 32 32 H 1.09002 * 113.68626 * 102.08525 * 6 5 4 33 33 H 1.09001 * 113.68918 * 331.05176 * 6 5 4 34 34 H 1.09006 * 113.56861 * 269.70373 * 7 6 5 35 35 H 0.97001 * 119.99937 * 334.99429 * 8 7 6 36 36 H 1.08998 * 109.47130 * 299.99858 * 11 9 8 37 37 H 1.09002 * 109.47240 * 59.99793 * 11 9 8 38 38 H 1.09001 * 109.47333 * 299.99639 * 12 11 9 39 39 H 1.08992 * 109.47460 * 60.00185 * 12 11 9 40 40 H 0.97002 * 119.99705 * 180.02562 * 16 15 13 41 41 H 1.08997 * 113.59708 * 28.91898 * 21 5 4 42 42 H 1.08992 * 113.83274 * 257.82223 * 21 5 4 43 43 H 1.08996 * 110.63762 * 83.05058 * 22 5 4 44 44 H 1.08997 * 110.64313 * 205.95558 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 2.0551 -0.7514 -1.2424 5 6 2.8076 -1.9520 -0.6527 6 6 4.3265 -1.9217 -0.7716 7 6 4.2515 -3.4441 -0.9946 8 7 5.1606 -3.9290 -2.0362 9 6 5.5885 -5.2068 -2.0156 10 8 5.2214 -5.9551 -1.1346 11 6 6.5231 -5.7058 -3.0873 12 6 6.8513 -7.1783 -2.8327 13 6 7.7864 -7.6770 -3.9041 14 1 8.1135 -7.0105 -4.6884 15 6 8.2243 -8.9843 -3.8830 16 7 7.8263 -9.7957 -2.9276 17 14 9.3828 -9.6027 -5.2115 18 1 10.7881 -9.3861 -4.7829 19 1 9.1512 -11.0525 -5.4346 20 1 9.1301 -8.8612 -6.4731 21 6 2.8082 -3.2289 -1.4879 22 6 2.2411 -2.0724 0.7706 23 8 2.0192 -0.6969 1.1595 24 1 -0.3634 0.5207 0.8859 25 1 -0.3633 0.5069 -0.8940 26 1 -0.3633 -1.0276 0.0080 27 1 3.1399 1.4314 0.0080 28 1 1.6968 1.9529 -0.8939 29 1 1.6838 1.9576 0.8859 30 1 2.7331 -0.1181 -1.8147 31 1 1.2261 -1.0875 -1.8654 32 1 4.8324 -1.6387 0.1515 33 1 4.6869 -1.3693 -1.6393 34 1 4.3155 -4.0232 -0.0734 35 1 5.4543 -3.3304 -2.7406 36 1 6.0459 -5.6036 -4.0619 37 1 7.4421 -5.1199 -3.0695 38 1 7.3284 -7.2810 -1.8580 39 1 5.9322 -7.7638 -2.8508 40 1 8.1347 -10.7153 -2.9126 41 1 2.7343 -3.0488 -2.5604 42 1 2.1076 -3.9859 -1.1356 43 1 1.3024 -2.6263 0.7650 44 1 2.9636 -2.5496 1.4327 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889725239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:44 Heat of formation + Delta-G solvation = -85.426557 kcal Electronic energy + Delta-G solvation = -22019.246933 eV Core-core repulsion = 18743.301261 eV Total energy + Delta-G solvation = -3275.945672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17252 -39.12865 -37.43490 -33.44391 -33.40137 -33.25087 -30.95071 -29.00090 -27.76486 -26.22641 -26.00330 -25.69338 -22.73355 -21.16064 -20.50921 -19.74524 -18.67933 -16.88741 -16.49696 -16.09009 -15.80388 -15.54924 -15.33824 -14.88189 -14.52311 -14.38649 -13.88371 -13.50285 -13.26887 -13.03644 -12.81140 -12.56511 -12.37719 -12.34615 -12.23807 -12.09268 -11.85351 -11.53922 -11.25171 -11.16498 -10.98544 -10.92572 -10.60066 -10.53428 -10.36295 -9.94888 -9.87177 -9.65578 -9.16277 -8.98025 -8.74336 -8.31489 -5.95637 -3.99997 3.23176 3.33475 3.39272 3.41789 3.48845 3.58642 4.08212 4.19740 4.40453 4.48134 4.53889 4.59351 4.71819 4.77338 4.92856 5.21185 5.21858 5.24607 5.32060 5.39260 5.42153 5.46505 5.49896 5.52107 5.55797 5.60541 5.64919 5.72352 5.82370 5.85351 5.94879 5.97126 6.16458 6.23765 6.26060 6.70587 6.78791 6.90743 7.74974 7.87254 7.91188 8.07968 8.39448 8.79736 9.08769 9.63452 11.15337 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.055163 B = 0.002565 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.465562 B =10915.211401 C =11090.911000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 C -0.143 4.143 4 C -0.129 4.129 5 C -0.114 4.114 6 C -0.128 4.128 7 C 0.125 3.875 8 N -0.734 5.734 9 C 0.510 3.490 10 O -0.535 6.535 11 C -0.131 4.131 12 C 0.037 3.963 13 C -0.527 4.527 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.136 4.136 22 C 0.069 3.931 23 O -0.368 6.368 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.397 0.603 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.427 23.102 3.557 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.057 3.943 3 C -0.200 4.200 4 C -0.166 4.166 5 C -0.115 4.115 6 C -0.166 4.166 7 C 0.020 3.980 8 N -0.386 5.386 9 C 0.299 3.701 10 O -0.410 6.410 11 C -0.171 4.171 12 C -0.001 4.001 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.175 4.175 22 C -0.007 4.007 23 O -0.287 6.287 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.231 0.769 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.633 22.433 4.476 26.630 hybrid contribution 0.664 -0.198 -1.266 1.444 sum -12.969 22.236 3.210 25.940 Atomic orbital electron populations 1.22255 0.95009 1.02448 1.02342 1.22171 0.93465 0.93187 0.85511 1.21885 1.01817 0.94035 1.02242 1.22822 1.00289 0.96135 0.97392 1.22277 0.96516 0.96125 0.96543 1.23178 0.94375 0.96173 1.02869 1.22465 0.88682 0.93796 0.93102 1.46178 1.49916 1.12880 1.29639 1.21601 0.80670 0.80727 0.87138 1.90661 1.57304 1.55369 1.37676 1.21869 0.96958 1.02462 0.95784 1.18894 0.97111 0.86754 0.97313 1.21229 1.28322 0.96099 1.10886 0.92628 1.25032 0.96526 0.96984 0.95894 1.69999 1.44424 1.05893 1.32522 0.86589 0.81196 0.78030 0.82110 1.20671 1.21224 1.19907 1.23313 0.98295 0.95768 1.00147 1.23174 0.99910 0.84113 0.93517 1.88947 1.85931 1.20854 1.32977 0.91977 0.91668 0.92276 0.91839 0.91427 0.92027 0.90184 0.90250 0.90406 0.89378 0.86980 0.76890 0.90299 0.90272 0.95845 0.95843 0.92954 0.89342 0.90655 0.91725 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.63 37.16 0.32 -0.85 16 2 C 0.10 0.79 1.20 -89.88 -0.11 0.68 16 3 C -0.14 -1.00 8.69 37.16 0.32 -0.68 16 4 C -0.13 -0.97 5.74 -25.75 -0.15 -1.12 16 5 C -0.11 -1.00 1.05 -154.47 -0.16 -1.16 16 6 C -0.13 -1.17 7.08 -26.50 -0.19 -1.36 16 7 C 0.13 1.50 4.14 -66.86 -0.28 1.23 16 8 N -0.73 -9.98 5.35 -52.77 -0.28 -10.26 16 9 C 0.51 9.72 7.83 -10.99 -0.09 9.63 16 10 O -0.53 -12.56 15.58 5.55 0.09 -12.48 16 11 C -0.13 -2.64 5.64 -27.88 -0.16 -2.80 16 12 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 13 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 14 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 17 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.14 -1.38 7.23 -26.40 -0.19 -1.57 16 22 C 0.07 0.66 6.92 37.50 0.26 0.92 16 23 O -0.37 -3.91 10.86 -35.23 -0.38 -4.29 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.55 7.47 -51.93 -0.39 0.16 16 31 H 0.08 0.56 7.67 -51.92 -0.40 0.16 16 32 H 0.08 0.74 8.12 -51.93 -0.42 0.31 16 33 H 0.09 0.70 8.01 -51.93 -0.42 0.28 16 34 H 0.11 1.59 7.47 -51.93 -0.39 1.20 16 35 H 0.40 4.19 8.72 -40.82 -0.36 3.84 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.10 0.90 8.07 -51.93 -0.42 0.48 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -34.06 356.25 -8.26 -42.32 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -7.82 Total: -0.58 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -0.94 Total: -9.96 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.45 Total: -37.09 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.30 Total: -16.76 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.06 -8.26 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889725239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.107 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds