Wall clock time and date at job start Tue Mar 31 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 5 5 H 1.48497 * 109.47169 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47241 * 119.99858 * 3 2 1 7 7 C 1.37877 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00490 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99828 * 179.72339 * 11 10 9 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 10 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 10 15 15 C 1.52990 * 109.47398 * 180.02562 * 14 12 11 16 16 H 1.08994 * 109.44012 * 305.00236 * 15 14 12 17 17 C 1.53073 * 109.43568 * 185.09155 * 15 14 12 18 18 C 1.53344 * 109.08565 * 180.48422 * 17 15 14 19 19 C 1.52854 * 108.70718 * 54.91806 * 18 17 15 20 20 C 1.53360 * 113.54536 * 77.69631 * 19 18 17 21 21 C 1.53859 * 86.94950 * 89.52327 * 20 19 18 22 22 C 1.53330 * 113.59075 * 175.67766 * 19 18 17 23 23 C 1.52752 * 112.68439 * 306.75045 * 19 18 17 24 24 O 1.42864 * 109.43291 * 64.90850 * 15 14 12 25 25 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46801 * 59.99996 * 9 7 2 27 27 H 1.09000 * 109.46987 * 300.00765 * 9 7 2 28 28 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 29 29 H 1.08994 * 109.46974 * 300.00349 * 10 9 7 30 30 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 31 31 H 1.08998 * 109.46954 * 300.00581 * 14 12 11 32 32 H 1.09002 * 109.46946 * 59.99717 * 14 12 11 33 33 H 1.08998 * 109.53742 * 300.41287 * 17 15 14 34 34 H 1.08998 * 109.53321 * 60.64787 * 17 15 14 35 35 H 1.09004 * 109.63302 * 295.13869 * 18 17 15 36 36 H 1.09004 * 109.58756 * 174.67026 * 18 17 15 37 37 H 1.09000 * 113.63231 * 204.03814 * 20 19 18 38 38 H 1.08996 * 113.63591 * 335.00701 * 20 19 18 39 39 H 1.09001 * 113.60253 * 270.53884 * 21 20 19 40 40 H 1.08997 * 113.60236 * 139.67302 * 21 20 19 41 41 H 1.09003 * 113.63204 * 25.03744 * 22 19 18 42 42 H 1.09001 * 113.62964 * 155.91414 * 22 19 18 43 43 H 1.09003 * 109.52958 * 293.74940 * 23 19 18 44 44 H 1.08995 * 109.58807 * 173.57305 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5125 -4.9308 0.0032 12 6 2.1863 -6.0980 -0.0023 13 8 3.3992 -6.0981 -0.0036 14 6 1.4328 -7.4031 -0.0068 15 6 2.4269 -8.5660 -0.0121 16 1 3.1102 -8.4554 -0.8540 17 6 1.6649 -9.8869 -0.1447 18 6 2.6676 -11.0472 -0.1369 19 6 3.5269 -10.9440 1.1229 20 6 2.8167 -11.4338 2.3908 21 6 3.3790 -12.8291 2.0677 22 6 4.5027 -12.1138 1.2977 23 6 4.1805 -9.5722 1.2795 24 8 3.1709 -8.5608 1.2076 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5575 -0.8880 27 1 0.6246 -2.5562 0.8919 28 1 2.8724 -3.6040 0.8910 29 1 2.8711 -3.6048 -0.8890 30 1 0.5425 -4.9308 0.0039 31 1 0.8071 -7.4644 0.8835 32 1 0.8051 -7.4572 -0.8964 33 1 0.9747 -9.9952 0.6919 34 1 1.1078 -9.8938 -1.0816 35 1 3.3043 -10.9870 -1.0196 36 1 2.1295 -11.9951 -0.1357 37 1 3.2161 -11.0037 3.3093 38 1 1.7298 -11.3765 2.3327 39 1 2.7257 -13.4263 1.4315 40 1 3.7289 -13.3726 2.9453 41 1 4.7706 -12.6029 0.3611 42 1 5.3697 -11.8715 1.9122 43 1 4.9056 -9.4206 0.4798 44 1 4.6848 -9.5157 2.2441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889911301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:47 Heat of formation + Delta-G solvation = -90.510663 kcal Electronic energy + Delta-G solvation = -22054.395411 eV Core-core repulsion = 18778.229275 eV Total energy + Delta-G solvation = -3276.166136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.74668 -39.13191 -37.25004 -34.73953 -33.34040 -32.77689 -31.21237 -29.55770 -27.75779 -25.97293 -25.10293 -24.10478 -22.88569 -21.26382 -20.83869 -19.86337 -18.50915 -16.72711 -16.61819 -16.21019 -15.95907 -15.81904 -15.17766 -14.83323 -14.51833 -14.29084 -14.24492 -13.71492 -13.31959 -13.14038 -12.86289 -12.73731 -12.51145 -12.27745 -11.86932 -11.69671 -11.41032 -11.32486 -11.17920 -11.14743 -10.98319 -10.64926 -10.63026 -10.40681 -10.26562 -10.19732 -9.72882 -9.40542 -9.26123 -9.07650 -8.47991 -8.27694 -6.06927 -4.09547 3.15654 3.32919 3.36429 3.39710 3.69703 3.78148 4.29019 4.32250 4.35947 4.43887 4.54985 4.74382 4.76329 4.88838 5.05002 5.18596 5.25036 5.29932 5.34160 5.40471 5.44637 5.49185 5.51581 5.57713 5.61562 5.65035 5.69161 5.76285 5.76891 5.89680 6.06017 6.14096 6.21473 6.41173 6.42123 6.80079 7.02956 7.30502 7.55632 7.65906 7.91731 8.12645 8.31937 8.79524 8.96557 9.54993 11.04690 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.049370 B = 0.002578 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.011708 B =10859.123214 C =11089.188701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.013 3.987 10 C 0.123 3.877 11 N -0.727 5.727 12 C 0.506 3.494 13 O -0.541 6.541 14 C -0.137 4.137 15 C 0.109 3.891 16 H 0.064 0.936 17 C -0.149 4.149 18 C -0.095 4.095 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.142 4.142 22 C -0.130 4.130 23 C 0.081 3.919 24 O -0.361 6.361 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.396 0.604 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.049 0.951 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.407 -26.154 1.105 26.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.377 5.377 12 C 0.291 3.709 13 O -0.418 6.418 14 C -0.177 4.177 15 C 0.050 3.950 16 H 0.082 0.918 17 C -0.187 4.187 18 C -0.132 4.132 19 C -0.119 4.119 20 C -0.161 4.161 21 C -0.180 4.180 22 C -0.168 4.168 23 C 0.004 3.996 24 O -0.279 6.279 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.229 0.771 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.067 0.933 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.101 -25.870 1.254 26.085 hybrid contribution -0.070 0.772 -0.194 0.799 sum 3.031 -25.098 1.060 25.303 Atomic orbital electron populations 1.69949 1.06079 1.26937 1.50422 1.24999 0.94902 0.99394 0.95030 0.86568 0.79511 0.82654 0.78777 1.20130 1.21256 1.20106 1.21032 0.93214 0.90463 1.51302 0.92337 1.19313 0.94216 0.91164 0.97763 1.21667 0.95984 0.81699 1.00607 1.46332 1.10380 1.06614 1.74412 1.20415 0.88343 0.85368 0.76728 1.90674 1.13946 1.87661 1.49562 1.21747 0.98760 0.92407 1.04799 1.21689 0.92425 0.92406 0.88438 0.91836 1.22241 0.98651 0.94994 1.02826 1.21341 0.97127 0.98526 0.96232 1.22255 0.97534 0.95790 0.96345 1.22849 1.00284 0.95687 0.97236 1.22859 0.98243 0.96647 1.00213 1.22854 0.96879 0.96403 1.00652 1.22455 0.89906 0.85359 1.01915 1.88026 1.49409 1.53299 1.37201 0.92820 0.96016 0.95972 0.92725 0.92784 0.77066 0.88354 0.87879 0.90866 0.90748 0.91527 0.91352 0.89990 0.91442 0.90372 0.91623 0.91435 0.89956 0.93278 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C 0.12 2.70 5.61 -4.04 -0.02 2.68 16 11 N -0.73 -13.03 5.56 -60.30 -0.33 -13.37 16 12 C 0.51 8.81 7.71 -10.98 -0.08 8.73 16 13 O -0.54 -11.57 15.41 -8.98 -0.14 -11.71 16 14 C -0.14 -1.67 5.41 -27.89 -0.15 -1.82 16 15 C 0.11 1.33 2.13 -26.70 -0.06 1.27 16 16 H 0.06 0.86 7.95 -51.93 -0.41 0.44 16 17 C -0.15 -1.33 5.35 -26.52 -0.14 -1.47 16 18 C -0.09 -0.78 5.11 -26.63 -0.14 -0.92 16 19 C -0.12 -1.05 0.86 -154.35 -0.13 -1.18 16 20 C -0.12 -1.02 7.13 -26.10 -0.19 -1.21 16 21 C -0.14 -0.98 7.73 -25.84 -0.20 -1.18 16 22 C -0.13 -0.96 7.23 -26.11 -0.19 -1.14 16 23 C 0.08 0.92 6.02 37.03 0.22 1.14 16 24 O -0.36 -5.18 9.64 -49.77 -0.48 -5.66 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.40 6.06 8.47 -40.82 -0.35 5.71 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.65 7.66 -51.93 -0.40 0.25 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.49 7.34 -51.93 -0.38 0.10 16 37 H 0.08 0.70 8.03 -51.93 -0.42 0.28 16 38 H 0.07 0.57 7.61 -51.93 -0.40 0.17 16 39 H 0.08 0.50 7.64 -51.93 -0.40 0.10 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 42 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -32.71 351.11 -9.35 -42.07 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.77 Total: 0.82 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.63 Total: -8.38 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.40 Total: -39.04 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.62 Total: -17.37 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.71 -9.35 -42.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889911301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.445 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds