Wall clock time and date at job start Tue Mar 31 2020 05:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86793 * 120.00310 * 2 1 4 4 H 1.48499 * 109.47286 * 240.00262 * 3 2 1 5 5 H 1.48503 * 109.46876 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47457 * 119.99975 * 3 2 1 7 7 C 1.37876 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99805 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47215 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47248 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47324 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99646 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00019 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99674 * 179.97438 * 14 12 11 16 16 H 1.08995 * 110.47698 * 344.83603 * 15 14 12 17 17 C 1.54949 * 110.53005 * 222.17479 * 15 14 12 18 18 C 1.55040 * 102.10435 * 220.38414 * 17 15 14 19 19 O 1.44522 * 103.58937 * 36.69170 * 18 17 15 20 20 C 1.43124 * 106.84753 * 320.55315 * 19 18 17 21 21 C 1.53740 * 110.46145 * 265.48570 * 20 19 18 22 22 C 1.55015 * 104.06841 * 216.03344 * 21 20 19 23 23 C 1.54939 * 102.80894 * 37.48847 * 22 21 20 24 24 C 1.53338 * 110.72292 * 146.95573 * 20 19 18 25 25 H 0.97004 * 120.00368 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47198 * 60.00131 * 9 7 2 27 27 H 1.09001 * 109.47238 * 300.00111 * 9 7 2 28 28 H 1.09000 * 109.47251 * 59.99771 * 10 9 7 29 29 H 1.09001 * 109.46787 * 299.99994 * 10 9 7 30 30 H 1.09000 * 109.47062 * 59.99801 * 11 10 9 31 31 H 1.09001 * 109.47340 * 299.99801 * 11 10 9 32 32 H 0.97000 * 120.00156 * 0.02562 * 14 12 11 33 33 H 1.09002 * 110.89824 * 102.19047 * 17 15 14 34 34 H 1.08998 * 110.90399 * 338.59134 * 17 15 14 35 35 H 1.08994 * 110.60585 * 278.16421 * 18 17 15 36 36 H 1.09004 * 110.72654 * 155.27867 * 18 17 15 37 37 H 1.09001 * 110.51596 * 334.68289 * 21 20 19 38 38 H 1.09004 * 110.51257 * 97.38968 * 21 20 19 39 39 H 1.09005 * 110.74374 * 279.16200 * 22 21 20 40 40 H 1.08994 * 110.74693 * 155.82078 * 22 21 20 41 41 H 1.09002 * 110.48139 * 203.67244 * 23 22 21 42 42 H 1.09005 * 110.48324 * 81.04392 * 23 22 21 43 43 H 1.09006 * 110.07169 * 239.61597 * 24 20 19 44 44 H 1.09001 * 110.07185 * 1.09024 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 6 2.4594 -6.1326 -0.0005 13 8 3.6518 -5.9110 -0.0009 14 7 2.0101 -7.4033 0.0004 15 6 2.9621 -8.5168 -0.0008 16 1 3.9585 -8.1662 -0.2694 17 6 2.4964 -9.6289 -0.9741 18 6 2.8298 -10.9174 -0.1790 19 8 2.5368 -10.5572 1.1897 20 6 2.9861 -9.2102 1.3694 21 6 4.4102 -9.1914 1.9483 22 6 4.4133 -7.9691 2.9017 23 6 2.9954 -8.0159 3.5247 24 6 2.0849 -8.4655 2.3615 25 1 -0.4851 0.8400 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8718 -3.6044 0.8894 29 1 2.8718 -3.6043 -0.8905 30 1 0.8532 -5.0451 -0.8896 31 1 0.8538 -5.0446 0.8903 32 1 1.0564 -7.5805 0.0011 33 1 3.0598 -9.5905 -1.9064 34 1 1.4257 -9.5555 -1.1648 35 1 3.8828 -11.1754 -0.2906 36 1 2.1972 -11.7444 -0.5017 37 1 4.6095 -10.1086 2.5025 38 1 5.1439 -9.0575 1.1533 39 1 4.5593 -7.0444 2.3434 40 1 5.1770 -8.0815 3.6711 41 1 2.7018 -7.0278 3.8790 42 1 2.9601 -8.7401 4.3386 43 1 1.6365 -7.5964 1.8800 44 1 1.3053 -9.1314 2.7314 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890408690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:24 Heat of formation + Delta-G solvation = -103.282314 kcal Electronic energy + Delta-G solvation = -22813.879029 eV Core-core repulsion = 19537.159073 eV Total energy + Delta-G solvation = -3276.719956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.05737 -38.97251 -36.29147 -34.69636 -34.15274 -32.10355 -31.14938 -28.96661 -28.83085 -27.61487 -24.74715 -23.60261 -22.02953 -21.13392 -20.56916 -19.77395 -19.60376 -17.24967 -16.60390 -16.35597 -16.18325 -15.77717 -15.47062 -14.81065 -14.68208 -14.41024 -13.76029 -13.49120 -13.40678 -13.12509 -12.82751 -12.37195 -12.24778 -11.98640 -11.77042 -11.56138 -11.37637 -11.29196 -11.18907 -10.97979 -10.84507 -10.77490 -10.63371 -10.59474 -10.54183 -9.83994 -9.69792 -9.68078 -9.27649 -9.03082 -8.96874 -8.31767 -5.97552 -3.99087 2.83438 3.16450 3.36591 3.40083 3.43885 3.61349 4.21916 4.45189 4.45887 4.49376 4.67796 4.76160 4.81367 4.98833 5.03736 5.27039 5.33929 5.38281 5.38492 5.43895 5.53325 5.63273 5.65086 5.66463 5.69352 5.73075 5.77098 5.86129 5.92768 6.02557 6.10554 6.23909 6.32761 6.44491 6.71419 6.78805 6.91974 7.15377 7.52052 7.70506 7.83335 8.02896 8.39097 8.46854 9.07768 9.64859 11.13909 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029702 B = 0.003318 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.463913 B = 8435.611624 C = 8779.621067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.094 4.094 11 C -0.139 4.139 12 C 0.514 3.486 13 O -0.532 6.532 14 N -0.725 5.725 15 C 0.119 3.881 16 H 0.112 0.888 17 C -0.165 4.165 18 C 0.046 3.954 19 O -0.363 6.363 20 C 0.088 3.912 21 C -0.132 4.132 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.129 4.129 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.402 0.598 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -23.252 1.559 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.179 4.179 12 C 0.302 3.698 13 O -0.407 6.407 14 N -0.378 5.378 15 C 0.013 3.987 16 H 0.130 0.870 17 C -0.204 4.204 18 C -0.031 4.031 19 O -0.282 6.282 20 C 0.048 3.952 21 C -0.170 4.170 22 C -0.162 4.162 23 C -0.159 4.159 24 C -0.166 4.166 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.237 0.763 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.076 -23.068 1.709 23.488 hybrid contribution 0.015 0.831 -0.232 0.862 sum 4.090 -22.238 1.477 22.659 Atomic orbital electron populations 1.69948 1.06036 1.26658 1.51093 1.25012 0.94852 0.99231 0.95369 0.86655 0.79581 0.83082 0.78688 1.20231 1.21332 1.20219 1.21232 0.93141 0.91030 1.50315 0.92644 1.19127 0.93958 0.91453 0.97109 1.21439 0.98621 0.91484 1.01670 1.21870 0.98152 0.94091 1.03814 1.21322 0.90517 0.83657 0.74265 1.90667 1.17244 1.84517 1.48311 1.46215 1.09739 1.05548 1.76322 1.22324 0.95883 0.86847 0.93644 0.86974 1.23507 1.03015 0.94626 0.99220 1.23513 1.00700 0.96943 0.81953 1.88882 1.82362 1.28631 1.28345 1.22724 0.94503 0.82458 0.95562 1.22757 0.95419 0.99329 0.99489 1.22488 0.96902 0.98486 0.98355 1.22325 0.95011 1.01253 0.97296 1.22429 0.98086 1.00540 0.95586 0.93007 0.96637 0.96614 0.92686 0.92732 0.89325 0.89309 0.76299 0.89546 0.89826 0.92003 0.88826 0.90758 0.91370 0.90400 0.91557 0.91332 0.91836 0.89187 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.09 -1.99 4.44 -26.73 -0.12 -2.11 16 11 C -0.14 -2.22 5.70 -27.88 -0.16 -2.38 16 12 C 0.51 7.75 7.42 -10.98 -0.08 7.67 16 13 O -0.53 -9.96 15.41 5.56 0.09 -9.87 16 14 N -0.72 -8.11 2.90 -52.52 -0.15 -8.27 16 15 C 0.12 1.28 3.24 -66.60 -0.22 1.06 16 16 H 0.11 1.41 6.25 -51.93 -0.32 1.09 16 17 C -0.17 -1.33 6.88 -24.62 -0.17 -1.50 16 18 C 0.05 0.36 7.71 38.24 0.29 0.66 16 19 O -0.36 -3.95 10.78 -35.23 -0.38 -4.33 16 20 C 0.09 0.95 1.07 -89.76 -0.10 0.86 16 21 C -0.13 -1.42 6.05 -25.28 -0.15 -1.57 16 22 C -0.12 -1.43 6.91 -24.64 -0.17 -1.60 16 23 C -0.12 -1.34 6.84 -24.97 -0.17 -1.51 16 24 C -0.13 -1.42 6.13 -25.82 -0.16 -1.58 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 29 H 0.05 1.21 8.10 -51.93 -0.42 0.78 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.40 3.55 8.35 -40.82 -0.34 3.21 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.62 7.96 -51.93 -0.41 0.20 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 38 H 0.07 0.72 7.37 -51.93 -0.38 0.33 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.01 5.04 -51.93 -0.26 0.75 16 44 H 0.07 0.78 7.97 -51.93 -0.41 0.37 16 LS Contribution 348.03 15.07 5.24 5.24 Total: -1.00 -32.61 348.03 -8.82 -41.43 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.59 Total: 0.49 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -1.75 Total: -15.36 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.58 Total: -34.57 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.29 Total: -14.20 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.61 -8.82 -41.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890408690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.852 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds