Wall clock time and date at job start Tue Mar 31 2020 07:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.70901 * 2 1 4 4 C 1.53004 * 117.49677 * 24.84989 * 3 2 1 5 5 C 1.53000 * 60.00144 * 252.50931 * 4 3 2 6 6 C 1.52875 * 109.52655 * 120.36060 * 2 1 3 7 7 O 1.42965 * 109.29746 * 67.70156 * 6 2 1 8 8 C 1.42963 * 114.16650 * 62.45053 * 7 6 2 9 9 C 1.53296 * 109.22165 * 297.41881 * 8 7 6 10 10 N 1.47152 * 108.38523 * 52.30359 * 9 8 7 11 11 C 1.34772 * 120.98429 * 129.44620 * 10 9 8 12 12 O 1.21279 * 120.00130 * 175.74592 * 11 10 9 13 13 C 1.50703 * 119.99705 * 355.74126 * 11 10 9 14 14 C 1.53004 * 109.47065 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47168 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47346 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99863 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00174 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99906 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99831 * 359.72377 * 18 16 15 21 21 H 1.48503 * 109.47361 * 270.27168 * 20 18 16 22 22 H 1.48497 * 109.47346 * 30.27797 * 20 18 16 23 23 H 1.48508 * 109.47051 * 150.27630 * 20 18 16 24 24 H 1.09001 * 109.46595 * 180.53871 * 1 2 3 25 25 H 1.09002 * 109.46798 * 300.53056 * 1 2 3 26 26 H 1.08994 * 109.47439 * 60.53604 * 1 2 3 27 27 H 1.08995 * 115.55232 * 170.55704 * 3 2 1 28 28 H 1.08998 * 117.49716 * 0.02562 * 4 3 2 29 29 H 1.08999 * 117.49716 * 145.01947 * 4 3 2 30 30 H 1.08990 * 117.50169 * 252.50782 * 5 4 3 31 31 H 1.09000 * 117.51410 * 107.47641 * 5 4 3 32 32 H 1.09001 * 109.58526 * 307.68688 * 6 2 1 33 33 H 1.09001 * 109.40822 * 187.60918 * 6 2 1 34 34 H 1.08994 * 109.50865 * 177.49846 * 8 7 6 35 35 H 1.09001 * 109.51388 * 57.34376 * 8 7 6 36 36 H 1.09007 * 109.68238 * 292.58319 * 9 8 7 37 37 H 1.08996 * 109.68344 * 172.02967 * 9 8 7 38 38 H 1.08999 * 109.47236 * 60.00029 * 13 11 10 39 39 H 1.09001 * 109.47379 * 300.00157 * 13 11 10 40 40 H 1.09004 * 109.46655 * 60.00169 * 14 13 11 41 41 H 1.08993 * 109.47159 * 300.00420 * 14 13 11 42 42 H 1.09007 * 109.46778 * 60.00140 * 15 14 13 43 43 H 1.09005 * 109.47288 * 300.00518 * 15 14 13 44 44 H 0.97001 * 119.99776 * 179.72546 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0460 1.4404 0.0000 4 6 1.1248 2.5208 0.5704 5 6 1.3616 2.4360 -0.9388 6 6 2.0410 -0.7283 1.2432 7 8 1.7164 -2.1170 1.1441 8 6 2.3303 -2.7841 0.0387 9 6 1.8291 -2.1603 -1.2688 10 7 2.0257 -0.7039 -1.1935 11 6 2.6461 -0.0353 -2.1856 12 8 2.7304 1.1738 -2.1418 13 6 3.2353 -0.7901 -3.3493 14 6 3.8766 0.1979 -4.3259 15 6 4.4753 -0.5685 -5.5070 16 6 5.1063 0.4046 -6.4692 17 1 5.0830 1.4637 -6.2591 18 6 5.7134 -0.0571 -7.6179 19 7 6.2645 0.7921 -8.4573 20 14 5.7604 -1.8896 -7.9774 21 1 6.9864 -2.4795 -7.3825 22 1 4.5622 -2.5404 -7.3892 23 1 5.7699 -2.1056 -9.4467 24 1 -0.3632 -1.0277 0.0097 25 1 -0.3633 0.5221 0.8852 26 1 -0.3634 0.5054 -0.8947 27 1 3.1177 1.5558 0.1613 28 1 0.1515 2.2053 0.9459 29 1 1.5906 3.3472 1.1072 30 1 1.9830 3.2066 -1.3949 31 1 0.5441 2.0647 -1.5567 32 1 1.5714 -0.3071 2.1322 33 1 3.1225 -0.6112 1.3127 34 1 2.0687 -3.8420 0.0611 35 1 3.4129 -2.6745 0.1029 36 1 0.7697 -2.3815 -1.3987 37 1 2.3946 -2.5641 -2.1086 38 1 2.4476 -1.3454 -3.8585 39 1 3.9928 -1.4846 -2.9859 40 1 4.6644 0.7528 -3.8164 41 1 3.1195 0.8927 -4.6893 42 1 3.6877 -1.1237 -6.0166 43 1 5.2325 -1.2631 -5.1432 44 1 6.6950 0.4669 -9.2634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890589643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:41 Heat of formation + Delta-G solvation = -42.192724 kcal Electronic energy + Delta-G solvation = -23306.904065 eV Core-core repulsion = 20032.833153 eV Total energy + Delta-G solvation = -3274.070912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.08124 -38.41167 -37.29816 -34.75938 -34.26823 -32.26447 -31.84046 -29.16062 -28.20821 -26.77615 -24.69652 -23.85883 -22.28181 -21.76159 -20.87760 -19.74801 -18.30214 -17.03098 -16.76182 -16.55637 -16.13898 -15.85839 -15.64177 -15.08439 -14.68211 -14.30990 -14.17051 -13.70658 -13.42792 -12.92946 -12.81157 -12.66475 -12.43091 -12.08739 -11.94706 -11.64408 -11.59489 -11.42576 -11.10218 -10.95075 -10.82357 -10.79467 -10.74551 -10.34033 -10.12410 -9.92794 -9.72933 -9.64797 -9.16664 -8.62477 -8.51806 -8.40672 -6.01543 -3.99265 2.75753 2.86024 3.30421 3.37661 3.40252 3.51312 4.02844 4.39396 4.46174 4.50773 4.66965 4.72386 4.87318 4.91042 5.00654 5.09203 5.17174 5.29094 5.30868 5.31833 5.36290 5.45342 5.53144 5.55725 5.57281 5.59967 5.71536 5.78831 5.94331 6.08263 6.14799 6.33469 6.40117 6.47209 6.55371 6.69166 6.80133 6.91470 7.35084 7.44334 7.45348 7.81959 8.43197 8.58486 9.05167 9.60594 11.12206 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.004134 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.319257 B = 6771.304901 C = 7662.960690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.170 3.830 3 C -0.131 4.131 4 C -0.207 4.207 5 C -0.104 4.104 6 C 0.061 3.939 7 O -0.378 6.378 8 C 0.046 3.954 9 C 0.073 3.927 10 N -0.618 5.618 11 C 0.513 3.487 12 O -0.510 6.510 13 C -0.142 4.142 14 C -0.085 4.085 15 C -0.014 4.014 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.065 3.935 19 N -0.904 5.904 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.266 1.266 23 H -0.288 1.288 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.014 0.986 43 H 0.010 0.990 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.988 -6.402 21.016 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.086 3.914 3 C -0.149 4.149 4 C -0.245 4.245 5 C -0.141 4.141 6 C -0.016 4.016 7 O -0.296 6.296 8 C -0.032 4.032 9 C -0.051 4.051 10 N -0.354 5.354 11 C 0.303 3.697 12 O -0.384 6.384 13 C -0.182 4.182 14 C -0.123 4.123 15 C -0.051 4.051 16 C -0.556 4.556 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.191 1.191 23 H -0.214 1.214 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.032 0.968 43 H 0.028 0.972 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.950 -5.820 20.968 24.826 hybrid contribution 0.353 -1.012 -0.571 1.215 sum -11.597 -6.832 20.397 24.437 Atomic orbital electron populations 1.22204 0.94152 1.02495 1.02533 1.20576 0.94197 0.91360 0.85296 1.21963 0.97786 0.88527 1.06664 1.23596 1.00635 1.00918 0.99329 1.22521 1.00991 1.00569 0.90016 1.22907 0.99996 0.81329 0.97407 1.87946 1.71914 1.21811 1.47971 1.23005 0.97436 0.97106 0.85664 1.22417 1.02430 0.80754 0.99484 1.48338 1.59772 1.07408 1.19895 1.21145 0.77131 0.88528 0.82899 1.90788 1.56850 1.13563 1.77221 1.21933 1.00918 1.00423 0.94926 1.21246 0.99557 0.96595 0.94876 1.19601 0.95542 0.96280 0.93721 1.21154 1.35316 0.94976 1.04177 0.90970 1.25051 0.94959 0.97609 0.96000 1.69924 1.37915 1.34284 1.12244 0.86765 0.78851 0.86275 0.77273 1.20349 1.19092 1.21431 0.91876 0.91219 0.91960 0.88128 0.89058 0.89369 0.88781 0.89823 0.87816 0.92639 0.87681 0.92466 0.90702 0.88274 0.89733 0.89732 0.92183 0.92111 0.96761 0.97217 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 7.50 37.16 0.28 -1.26 16 2 C 0.17 1.87 0.90 -131.52 -0.12 1.75 16 3 C -0.13 -1.60 3.38 -90.61 -0.31 -1.91 16 4 C -0.21 -2.16 9.78 -26.73 -0.26 -2.42 16 5 C -0.10 -1.38 6.84 -26.73 -0.18 -1.56 16 6 C 0.06 0.60 5.63 37.09 0.21 0.81 16 7 O -0.38 -3.82 10.37 -35.23 -0.37 -4.19 16 8 C 0.05 0.38 6.99 37.31 0.26 0.64 16 9 C 0.07 0.66 6.16 -3.53 -0.02 0.64 16 10 N -0.62 -7.40 2.72 -157.74 -0.43 -7.82 16 11 C 0.51 7.74 7.57 -10.99 -0.08 7.65 16 12 O -0.51 -8.97 10.27 5.56 0.06 -8.92 16 13 C -0.14 -2.18 4.07 -27.88 -0.11 -2.29 16 14 C -0.08 -1.73 4.44 -26.73 -0.12 -1.85 16 15 C -0.01 -0.34 4.04 -27.89 -0.11 -0.45 16 16 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 17 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 20 Si 0.88 21.71 27.46 -169.99 -4.67 17.04 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.21 6.55 56.52 0.37 -5.84 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H 0.06 0.61 7.24 -51.93 -0.38 0.23 16 25 H 0.07 0.59 6.36 -51.93 -0.33 0.26 16 26 H 0.06 0.68 6.55 -51.93 -0.34 0.34 16 27 H 0.10 1.38 8.02 -51.93 -0.42 0.97 16 28 H 0.09 0.83 5.99 -51.93 -0.31 0.52 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.40 7.90 -51.93 -0.41 0.99 16 31 H 0.08 1.16 6.67 -51.93 -0.35 0.81 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 34 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.63 7.69 -51.93 -0.40 0.23 16 37 H 0.10 0.82 6.04 -51.93 -0.31 0.51 16 38 H 0.08 1.17 7.85 -51.93 -0.41 0.76 16 39 H 0.08 1.16 7.83 -51.93 -0.41 0.75 16 40 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 41 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 42 H 0.01 0.33 7.21 -51.93 -0.37 -0.04 16 43 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -32.68 334.04 -7.96 -40.65 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.36 Total: -0.37 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -1.00 Total: -13.86 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.34 Total: -35.39 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.31 Total: -13.10 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.68 -7.96 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890589643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.547 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds