Wall clock time and date at job start Tue Mar 31 2020 05:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00023 * 2 1 4 4 H 1.48498 * 109.46794 * 270.00229 * 3 2 1 5 5 H 1.48496 * 109.46955 * 30.00265 * 3 2 1 6 6 H 1.48501 * 109.46805 * 150.00309 * 3 2 1 7 7 C 1.37883 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00270 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99572 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46692 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46555 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46912 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47277 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00249 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99925 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99948 * 179.97438 * 15 13 12 17 17 H 1.09000 * 110.54496 * 32.38404 * 16 15 13 18 18 C 1.54108 * 110.48863 * 269.76917 * 16 15 13 19 19 O 1.43747 * 107.29092 * 239.29518 * 18 16 15 20 20 C 1.44418 * 107.00393 * 26.48856 * 19 18 16 21 21 C 1.54817 * 110.49057 * 155.00214 * 16 15 13 22 22 H 1.09000 * 110.90817 * 216.02954 * 21 16 15 23 23 C 1.53001 * 110.90248 * 339.59658 * 21 16 15 24 24 C 1.53000 * 117.50223 * 297.07381 * 23 21 16 25 25 C 1.52997 * 117.49889 * 228.44642 * 23 21 16 26 26 H 0.97000 * 120.00318 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47629 * 60.00221 * 9 7 2 28 28 H 1.08996 * 109.47230 * 299.99817 * 9 7 2 29 29 H 1.08994 * 109.46994 * 60.00149 * 10 9 7 30 30 H 1.09004 * 109.46763 * 299.99504 * 10 9 7 31 31 H 1.08999 * 109.47722 * 60.00053 * 11 10 9 32 32 H 1.09004 * 109.47155 * 299.99233 * 11 10 9 33 33 H 1.08999 * 109.46895 * 59.99533 * 12 11 10 34 34 H 1.09009 * 109.46632 * 300.00027 * 12 11 10 35 35 H 0.97003 * 120.00280 * 359.97438 * 15 13 12 36 36 H 1.09000 * 109.87502 * 358.71500 * 18 16 15 37 37 H 1.08997 * 109.87760 * 119.71933 * 18 16 15 38 38 H 1.08998 * 110.65568 * 201.48604 * 20 19 18 39 39 H 1.08992 * 110.60340 * 78.46945 * 20 19 18 40 40 H 1.09002 * 115.55911 * 82.76071 * 23 21 16 41 41 H 1.08990 * 117.49990 * 145.01974 * 24 23 21 42 42 H 1.09004 * 117.49237 * 359.97438 * 24 23 21 43 43 H 1.08999 * 117.49685 * 0.02562 * 25 23 21 44 44 H 1.08997 * 117.50044 * 214.98097 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1501 -0.0005 13 6 1.7209 -7.4551 -0.0005 14 8 0.5082 -7.4552 -0.0005 15 7 2.3948 -8.6223 -0.0005 16 6 1.6623 -9.8910 0.0000 17 1 0.7244 -9.7914 -0.5463 18 6 1.3982 -10.3607 1.4438 19 8 2.0178 -11.6491 1.5940 20 6 3.1087 -11.7059 0.6494 21 6 2.5294 -11.0177 -0.6129 22 1 1.9160 -11.7117 -1.1875 23 6 3.6480 -10.4355 -1.4793 24 6 3.2388 -9.6316 -2.7151 25 6 3.8411 -11.0289 -2.8763 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8894 30 1 2.8719 -3.6044 -0.8906 31 1 0.8538 -5.0446 -0.8914 32 1 0.8533 -5.0451 0.8887 33 1 3.1005 -6.0923 0.8899 34 1 3.1017 -6.0922 -0.8902 35 1 3.3649 -8.6224 -0.0009 36 1 1.8360 -9.6545 2.1492 37 1 0.3251 -10.4405 1.6171 38 1 3.3770 -12.7400 0.4336 39 1 3.9707 -11.1550 1.0254 40 1 4.5398 -10.1131 -0.9418 41 1 3.8613 -8.7805 -2.9906 42 1 2.1726 -9.5179 -2.9111 43 1 3.1708 -11.8338 -3.1782 44 1 4.8598 -11.0969 -3.2578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891042076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:54 Heat of formation + Delta-G solvation = -82.907641 kcal Electronic energy + Delta-G solvation = -21881.648797 eV Core-core repulsion = 18605.812353 eV Total energy + Delta-G solvation = -3275.836444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78506 -39.00755 -37.34567 -34.98838 -34.41916 -32.63117 -31.08931 -29.86103 -28.75275 -25.61367 -23.72968 -23.13638 -22.56105 -22.20134 -20.58592 -19.97085 -19.83511 -17.37954 -16.85135 -16.30180 -16.15962 -16.01093 -15.61304 -15.17390 -14.84092 -14.44615 -14.38140 -13.97868 -13.69836 -12.94535 -12.67221 -12.53781 -12.29926 -12.06105 -11.88078 -11.80871 -11.68250 -11.57326 -11.37550 -10.98143 -10.64341 -10.53896 -10.50437 -10.41076 -10.37115 -10.05334 -9.82386 -9.61216 -9.22863 -9.21308 -8.97761 -8.30184 -5.94915 -3.97477 2.68485 3.00438 3.27295 3.34068 3.40126 3.43281 3.60986 4.02532 4.20465 4.38340 4.49127 4.52835 4.69993 4.79875 4.82763 4.89747 4.94974 4.99674 5.28505 5.29427 5.32682 5.36701 5.40567 5.41405 5.55552 5.57436 5.61834 5.72604 5.79110 5.87279 6.13828 6.21438 6.30927 6.50520 6.55644 6.84191 7.02201 7.20289 7.40237 7.74503 7.90579 8.06548 8.23867 8.48294 9.10309 9.66160 11.16428 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029817 B = 0.002688 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.824298 B =10416.036514 C =10907.867709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.514 3.486 14 O -0.534 6.534 15 N -0.724 5.724 16 C 0.119 3.881 17 H 0.104 0.896 18 C 0.035 3.965 19 O -0.376 6.376 20 C 0.053 3.947 21 C -0.099 4.099 22 H 0.097 0.903 23 C -0.151 4.151 24 C -0.166 4.166 25 C -0.176 4.176 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.400 0.600 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.379 -26.016 -2.435 27.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.178 4.178 13 C 0.301 3.699 14 O -0.410 6.410 15 N -0.378 5.378 16 C 0.013 3.987 17 H 0.122 0.878 18 C -0.043 4.043 19 O -0.295 6.295 20 C -0.024 4.024 21 C -0.118 4.118 22 H 0.115 0.885 23 C -0.169 4.169 24 C -0.203 4.203 25 C -0.213 4.213 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.236 0.764 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.081 0.919 40 H 0.126 0.874 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.263 -26.047 -2.276 27.421 hybrid contribution 0.996 1.120 -0.164 1.507 sum 9.258 -24.927 -2.440 26.703 Atomic orbital electron populations 1.69973 1.06052 1.26512 1.50937 1.25044 0.94836 0.99226 0.95464 0.86614 0.79833 0.83616 0.78045 1.20711 1.21246 1.19920 1.21287 0.92974 0.91217 1.50402 0.92769 1.19094 0.94054 0.91267 0.97301 1.21650 0.99073 0.94031 1.00031 1.21450 0.97007 0.92696 1.02945 1.21793 1.00102 0.91991 1.03940 1.21129 0.88475 0.85573 0.74693 1.90709 1.14222 1.87610 1.48453 1.46088 1.10116 1.04813 1.76755 1.22189 0.96779 0.83748 0.95951 0.87799 1.23723 0.99356 0.85169 0.96080 1.88915 1.46364 1.34436 1.59746 1.23617 0.90161 1.01626 0.86963 1.22624 0.96026 0.96561 0.96616 0.88463 1.22037 0.99621 1.05298 0.89942 1.22928 1.01941 0.94792 1.00685 1.23041 1.02393 0.97269 0.98593 0.93038 0.96610 0.96597 0.93495 0.93516 0.91816 0.91821 0.89203 0.89162 0.76443 0.91606 0.88951 0.88625 0.91938 0.87443 0.88440 0.88694 0.88765 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 12 C -0.14 -1.76 5.70 -27.88 -0.16 -1.92 16 13 C 0.51 6.71 7.83 -10.99 -0.09 6.62 16 14 O -0.53 -9.29 15.63 5.56 0.09 -9.20 16 15 N -0.72 -6.65 4.00 -52.32 -0.21 -6.86 16 16 C 0.12 1.08 3.12 -66.40 -0.21 0.87 16 17 H 0.10 1.12 7.56 -51.93 -0.39 0.73 16 18 C 0.03 0.34 7.51 37.74 0.28 0.62 16 19 O -0.38 -3.78 11.52 -35.23 -0.41 -4.19 16 20 C 0.05 0.36 7.18 38.21 0.27 0.64 16 21 C -0.10 -0.66 3.26 -88.61 -0.29 -0.95 16 22 H 0.10 0.63 7.98 -51.93 -0.41 0.22 16 23 C -0.15 -0.86 3.70 -90.62 -0.34 -1.20 16 24 C -0.17 -1.13 9.53 -26.73 -0.25 -1.39 16 25 C -0.18 -0.98 10.19 -26.73 -0.27 -1.25 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 32 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.40 2.74 7.14 -40.82 -0.29 2.45 16 36 H 0.07 0.68 7.93 -51.93 -0.41 0.27 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.38 7.92 -51.93 -0.41 -0.04 16 40 H 0.11 0.51 7.61 -51.93 -0.40 0.11 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.50 8.08 -51.93 -0.42 0.08 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 358.55 15.07 5.40 5.40 Total: -1.00 -33.55 358.55 -9.03 -42.58 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.77 Total: -2.06 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -1.85 Total: -15.72 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.53 Total: -33.72 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.32 Total: -13.39 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.55 -9.03 -42.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891042076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.323 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds