Wall clock time and date at job start Tue Mar 31 2020 05:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46978 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47342 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99736 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00201 * 179.97438 * 13 12 11 16 16 C 1.46503 * 119.99606 * 180.02562 * 15 13 12 17 17 H 1.08995 * 110.43553 * 325.70097 * 16 15 13 18 18 C 1.54094 * 110.48593 * 88.24925 * 16 15 13 19 19 O 1.44048 * 107.14366 * 120.65691 * 18 16 15 20 20 C 1.44380 * 107.03652 * 333.59006 * 19 18 16 21 21 C 1.54813 * 110.48027 * 203.15493 * 16 15 13 22 22 H 1.09002 * 110.89906 * 143.97434 * 21 16 15 23 23 C 1.52991 * 110.91221 * 20.40848 * 21 16 15 24 24 C 1.52996 * 117.50480 * 128.61785 * 23 21 16 25 25 C 1.52994 * 60.00009 * 252.50797 * 24 23 21 26 26 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 28 28 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 29 29 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 30 30 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 31 31 H 1.09002 * 109.46838 * 299.99316 * 11 10 9 32 32 H 1.09001 * 109.47142 * 59.99766 * 11 10 9 33 33 H 1.09002 * 109.47045 * 299.99833 * 12 11 10 34 34 H 1.09001 * 109.47375 * 59.99908 * 12 11 10 35 35 H 0.96991 * 119.99747 * 0.02562 * 15 13 12 36 36 H 1.09006 * 109.88027 * 240.12519 * 18 16 15 37 37 H 1.08997 * 109.88347 * 1.27801 * 18 16 15 38 38 H 1.08993 * 110.62333 * 281.51079 * 20 19 18 39 39 H 1.08996 * 110.61482 * 158.50568 * 20 19 18 40 40 H 1.09006 * 115.54624 * 274.32764 * 23 21 16 41 41 H 1.08994 * 117.49670 * 0.02562 * 24 23 21 42 42 H 1.08997 * 117.50209 * 145.01690 * 24 23 21 43 43 H 1.09002 * 117.50207 * 252.50743 * 25 24 23 44 44 H 1.09001 * 117.49880 * 107.49049 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0031 13 6 1.7212 -7.4551 0.0031 14 8 0.5084 -7.4551 0.0012 15 7 2.3951 -8.6223 0.0042 16 6 1.6625 -9.8910 0.0036 17 1 0.7409 -9.7986 0.5780 18 6 1.3564 -10.3363 -1.4395 19 8 1.9744 -11.6239 -1.6267 20 6 3.0904 -11.6942 -0.7134 21 6 2.5458 -11.0267 0.5751 22 1 1.9480 -11.7298 1.1552 23 6 3.6875 -10.4581 1.4200 24 6 3.8750 -11.0258 2.8283 25 6 3.3115 -9.6158 2.6406 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8896 29 1 2.8727 -3.6047 -0.8877 30 1 2.8713 -3.6038 0.8923 31 1 0.8528 -5.0447 0.8906 32 1 0.8546 -5.0450 -0.8895 33 1 3.1026 -6.0925 -0.8860 34 1 3.0999 -6.0919 0.8940 35 1 3.3650 -8.6222 0.0053 36 1 0.2786 -10.4161 -1.5820 37 1 1.7734 -9.6182 -2.1454 38 1 3.9418 -11.1369 -1.1038 39 1 3.3647 -12.7316 -0.5217 40 1 4.5835 -10.1730 0.8685 41 1 3.1851 -11.8048 3.1528 42 1 4.8944 -11.1145 3.2036 43 1 3.9602 -8.7768 2.8925 44 1 2.2506 -9.4669 2.8419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891042080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:08 Heat of formation + Delta-G solvation = -86.838216 kcal Electronic energy + Delta-G solvation = -21927.915002 eV Core-core repulsion = 18651.908116 eV Total energy + Delta-G solvation = -3276.006886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.82620 -39.04911 -37.37177 -35.16773 -34.46803 -32.84823 -31.11190 -29.79402 -28.69755 -25.27093 -23.74681 -23.13311 -22.58878 -22.25547 -20.74432 -20.15520 -19.88271 -17.43588 -16.89460 -16.59319 -16.32392 -16.07044 -15.67409 -15.22700 -14.86335 -14.40812 -14.08972 -13.84322 -13.66881 -13.02647 -12.88838 -12.62399 -12.42220 -12.23948 -12.13015 -11.90202 -11.83816 -11.40765 -11.11538 -10.94896 -10.68460 -10.66579 -10.57983 -10.40391 -10.09623 -10.08575 -9.91732 -9.75197 -9.53467 -9.26999 -8.46407 -8.27206 -6.30552 -3.99233 2.62672 2.95685 3.23661 3.45846 3.48309 3.57504 3.67145 3.98454 4.17489 4.35029 4.49732 4.58729 4.66116 4.76413 4.78788 4.85577 4.91072 4.97218 5.22248 5.25848 5.27873 5.29464 5.38690 5.46799 5.52220 5.53886 5.57794 5.69292 5.75482 5.79710 6.02985 6.16174 6.20071 6.41759 6.48269 6.70728 6.87613 7.04104 7.35070 7.49839 7.62777 8.18075 8.28638 8.52439 8.94662 9.73559 11.10217 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.002701 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.079992 B =10364.485532 C =10860.888526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.012 3.988 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.007 3.993 10 C -0.103 4.103 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.514 3.486 14 O -0.535 6.535 15 N -0.723 5.723 16 C 0.119 3.881 17 H 0.103 0.897 18 C 0.035 3.965 19 O -0.377 6.377 20 C 0.053 3.947 21 C -0.099 4.099 22 H 0.098 0.902 23 C -0.152 4.152 24 C -0.175 4.175 25 C -0.167 4.167 26 H 0.269 0.731 27 H 0.006 0.994 28 H 0.007 0.993 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.401 0.599 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.903 -26.319 2.378 28.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.641 4.641 8 H 0.066 0.934 9 C -0.030 4.030 10 C -0.141 4.141 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.301 3.699 14 O -0.411 6.411 15 N -0.377 5.377 16 C 0.013 3.987 17 H 0.121 0.879 18 C -0.043 4.043 19 O -0.295 6.295 20 C -0.024 4.024 21 C -0.118 4.118 22 H 0.116 0.884 23 C -0.171 4.171 24 C -0.212 4.212 25 C -0.204 4.204 26 H 0.080 0.920 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.236 0.764 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.741 -24.819 2.222 26.407 hybrid contribution 0.810 -1.564 0.157 1.769 sum 9.552 -26.383 2.379 28.160 Atomic orbital electron populations 1.70767 1.06896 1.30675 1.46739 1.25863 0.96597 1.02744 0.93923 0.83552 0.74876 0.75420 0.76425 1.21499 1.21499 1.20783 1.22084 0.94209 0.92205 1.55585 0.93434 1.19219 0.94695 0.93099 0.95995 1.21519 0.98798 0.93489 1.00284 1.21459 0.97072 0.92791 1.02864 1.21773 1.00042 0.91955 1.04023 1.21100 0.88456 0.85573 0.74744 1.90709 1.14214 1.87634 1.48510 1.46098 1.10162 1.04797 1.76678 1.22191 0.96506 0.83720 0.96237 0.87927 1.23772 0.99350 0.85277 0.95859 1.88958 1.44608 1.34930 1.61012 1.23611 0.89763 1.01704 0.87275 1.22619 0.95821 0.96574 0.96767 0.88409 1.22055 0.99429 1.05446 0.90130 1.23042 1.02510 0.97394 0.98258 1.22937 1.02210 0.94390 1.00840 0.92033 0.97527 0.97511 0.93321 0.93319 0.91867 0.91854 0.89141 0.89107 0.76383 0.88912 0.91557 0.91940 0.88595 0.87388 0.88742 0.88621 0.88437 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.95 13.65 55.43 0.76 -28.20 16 2 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 3 Si 1.07 25.79 29.90 -169.99 -5.08 20.71 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.60 -17.68 9.11 -34.44 -0.31 -18.00 16 8 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 9 C 0.01 0.18 4.28 -27.88 -0.12 0.06 16 10 C -0.10 -2.14 5.15 -26.73 -0.14 -2.28 16 11 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 12 C -0.14 -1.76 5.70 -27.89 -0.16 -1.92 16 13 C 0.51 6.68 7.83 -10.99 -0.09 6.60 16 14 O -0.54 -9.25 15.66 5.56 0.09 -9.16 16 15 N -0.72 -6.61 3.91 -52.33 -0.20 -6.82 16 16 C 0.12 1.07 3.05 -66.40 -0.20 0.87 16 17 H 0.10 1.09 7.61 -51.93 -0.40 0.70 16 18 C 0.04 0.35 7.53 37.73 0.28 0.63 16 19 O -0.38 -3.79 11.53 -35.23 -0.41 -4.19 16 20 C 0.05 0.36 7.18 38.21 0.27 0.64 16 21 C -0.10 -0.65 3.28 -88.61 -0.29 -0.94 16 22 H 0.10 0.63 7.96 -51.93 -0.41 0.21 16 23 C -0.15 -0.85 3.71 -90.63 -0.34 -1.19 16 24 C -0.18 -0.96 10.19 -26.74 -0.27 -1.24 16 25 C -0.17 -1.12 9.30 -26.74 -0.25 -1.37 16 26 H 0.27 8.53 7.22 -40.82 -0.29 8.24 16 27 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 28 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 32 H 0.06 1.20 8.10 -51.93 -0.42 0.77 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 2.74 7.12 -40.82 -0.29 2.45 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.69 7.93 -51.93 -0.41 0.28 16 38 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.11 0.50 7.69 -51.93 -0.40 0.10 16 41 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -34.39 356.99 -9.01 -43.40 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.71 Total: -1.31 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -1.83 Total: -19.81 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.55 Total: -35.01 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.32 Total: -13.35 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.39 -9.01 -43.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891042080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.441 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds