Wall clock time and date at job start Tue Mar 31 2020 05:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00046 * 2 1 4 4 H 1.48497 * 109.47180 * 269.99898 * 3 2 1 5 5 H 1.48503 * 109.46903 * 29.99877 * 3 2 1 6 6 H 1.48498 * 109.47152 * 149.99643 * 3 2 1 7 7 C 1.37876 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00505 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99904 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47159 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72352 * 12 11 10 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 11 16 16 C 1.52997 * 109.47555 * 180.02562 * 15 14 12 17 17 H 1.09004 * 110.24065 * 60.55969 * 16 15 14 18 18 C 1.55194 * 110.28026 * 182.66838 * 16 15 14 19 19 C 1.54011 * 100.75142 * 154.08675 * 18 16 15 20 20 C 1.52410 * 115.91940 * 96.36574 * 19 18 16 21 21 C 1.54042 * 86.64379 * 93.63309 * 20 19 18 22 22 C 1.52402 * 115.92892 * 198.17085 * 19 18 16 23 23 C 1.53073 * 103.79492 * 327.28187 * 19 18 16 24 24 O 1.43596 * 107.17098 * 19.97643 * 23 19 18 25 25 H 0.96996 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47154 * 60.00159 * 9 7 2 27 27 H 1.09003 * 109.46515 * 299.99635 * 9 7 2 28 28 H 1.09004 * 109.47131 * 59.99662 * 10 9 7 29 29 H 1.09000 * 109.47504 * 299.99966 * 10 9 7 30 30 H 1.09004 * 109.47066 * 60.00025 * 11 10 9 31 31 H 1.08994 * 109.47405 * 299.99855 * 11 10 9 32 32 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 33 33 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 34 34 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 35 35 H 1.09005 * 111.15590 * 271.96064 * 18 16 15 36 36 H 1.08990 * 111.15809 * 36.21114 * 18 16 15 37 37 H 1.09003 * 113.67950 * 208.06512 * 20 19 18 38 38 H 1.09001 * 113.68405 * 339.19705 * 20 19 18 39 39 H 1.09000 * 113.56728 * 269.77409 * 21 20 19 40 40 H 1.08998 * 113.56954 * 139.01183 * 21 20 19 41 41 H 1.08997 * 113.68460 * 20.81329 * 22 19 18 42 42 H 1.09004 * 113.68379 * 151.84342 * 22 19 18 43 43 H 1.09001 * 109.90353 * 260.59286 * 23 19 18 44 44 H 1.09003 * 110.04623 * 139.44231 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5515 -2.6365 0.0022 12 6 6.0538 -4.0574 0.0040 13 8 5.2657 -4.9793 0.0047 14 7 7.3789 -4.3037 -0.0014 15 6 7.8672 -5.6848 -0.0057 16 6 9.3972 -5.6849 -0.0107 17 1 9.7773 -5.1840 0.8797 18 6 9.9348 -7.1389 -0.0832 19 6 11.3088 -6.9049 -0.7383 20 6 12.4935 -6.8064 0.2154 21 6 12.6925 -8.3157 -0.0199 22 6 11.9655 -8.1291 -1.3650 23 6 11.0736 -5.7071 -1.6619 24 8 9.8916 -5.0380 -1.1957 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8751 -0.6805 -0.8889 28 1 3.6585 -3.1510 -0.8875 29 1 3.6579 -3.1498 0.8925 30 1 5.9148 -2.1220 0.8918 31 1 5.9148 -2.1235 -0.8881 32 1 8.0092 -3.5664 -0.0022 33 1 7.5071 -6.2003 0.8846 34 1 7.5006 -6.1970 -0.8953 35 1 10.0418 -7.5689 0.9128 36 1 9.2998 -7.7623 -0.7125 37 1 13.3108 -6.1928 -0.1636 38 1 12.2125 -6.5561 1.2384 39 1 12.1481 -8.9424 0.6866 40 1 13.7376 -8.6063 -0.1259 41 1 11.2646 -8.9305 -1.5987 42 1 12.6311 -7.8923 -2.1951 43 1 10.9256 -6.0512 -2.6855 44 1 11.9256 -5.0286 -1.6182 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894399512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:13 Heat of formation + Delta-G solvation = -85.120927 kcal Electronic energy + Delta-G solvation = -21501.311099 eV Core-core repulsion = 18225.378680 eV Total energy + Delta-G solvation = -3275.932419 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12181 -39.39421 -37.53629 -34.76442 -34.16248 -32.08250 -31.39672 -29.49135 -28.31977 -26.36868 -25.93206 -23.44033 -22.92760 -21.61602 -20.41651 -19.71819 -19.08912 -17.22780 -17.00491 -16.47114 -16.04884 -15.82697 -15.59795 -15.42630 -14.97011 -14.34526 -14.15170 -13.75802 -13.46361 -13.40092 -12.95700 -12.64323 -12.58860 -12.55511 -12.29974 -11.98803 -11.73044 -11.59918 -11.49485 -10.97172 -10.90512 -10.79229 -10.73383 -10.69836 -9.95200 -9.88135 -9.78456 -9.64281 -9.35459 -9.07816 -8.98251 -8.46765 -5.96532 -3.93948 2.94762 3.13556 3.35257 3.42021 3.45511 3.51197 3.78750 3.90257 4.09042 4.27217 4.46508 4.51178 4.61538 4.69063 4.72915 4.96568 5.13689 5.15556 5.19313 5.26417 5.28481 5.32768 5.36804 5.36969 5.42761 5.48156 5.59436 5.65075 5.68272 5.71459 5.77975 5.84616 6.18984 6.46138 6.63204 6.64342 6.76137 6.98874 7.43930 7.51883 7.64861 7.87521 8.48458 8.64050 9.10426 9.65670 11.17185 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.048327 B = 0.002373 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.242640 B =11794.846447 C =12117.476851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.063 3.937 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.087 4.087 11 C -0.141 4.141 12 C 0.512 3.488 13 O -0.539 6.539 14 N -0.734 5.734 15 C 0.122 3.878 16 C 0.072 3.928 17 H 0.078 0.922 18 C -0.125 4.125 19 C -0.118 4.118 20 C -0.127 4.127 21 C -0.140 4.140 22 C -0.125 4.125 23 C 0.066 3.934 24 O -0.375 6.375 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.403 0.597 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.800 -15.121 -0.260 34.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.125 4.125 11 C -0.181 4.181 12 C 0.300 3.700 13 O -0.415 6.415 14 N -0.388 5.388 15 C -0.002 4.002 16 C 0.014 3.986 17 H 0.096 0.904 18 C -0.163 4.163 19 C -0.118 4.118 20 C -0.164 4.164 21 C -0.178 4.178 22 C -0.162 4.162 23 C -0.011 4.011 24 O -0.295 6.295 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.237 0.763 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 29.959 -15.502 -0.354 33.735 hybrid contribution 0.856 1.094 0.030 1.390 sum 30.816 -14.408 -0.324 34.019 Atomic orbital electron populations 1.69924 1.06293 1.26742 1.51485 1.25060 0.94759 0.99167 0.94762 0.86751 0.80315 0.83616 0.78408 1.20362 1.21492 1.19033 1.21176 0.89566 0.94525 1.50266 0.90943 1.19615 0.97277 0.92252 0.96104 1.21259 0.89306 0.99457 1.02497 1.21857 1.00595 0.91937 1.03703 1.21168 0.81375 0.92648 0.74811 1.90686 1.55251 1.46775 1.48775 1.45990 1.07613 1.08088 1.77095 1.21450 0.91072 0.84841 1.02839 1.23266 0.93610 0.92572 0.89142 0.90436 1.22906 0.94530 0.96618 1.02211 1.22470 0.95331 0.96599 0.97442 1.22816 0.97072 0.97079 0.99477 1.22903 1.00892 0.96497 0.97487 1.22713 0.99404 0.96786 0.97331 1.22965 0.87995 0.92561 0.97563 1.88536 1.43003 1.54665 1.43251 0.92841 0.96667 0.97072 0.92134 0.92111 0.89431 0.89340 0.76326 0.90437 0.91069 0.89393 0.89437 0.89633 0.90997 0.90017 0.91242 0.90853 0.89647 0.90991 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.77 13.96 55.43 0.77 -27.99 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.52 -15.41 9.66 -34.44 -0.33 -15.74 16 8 H 0.07 2.34 7.99 -52.49 -0.42 1.92 16 9 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 10 C -0.09 -1.87 4.44 -26.74 -0.12 -1.99 16 11 C -0.14 -2.30 5.70 -27.88 -0.16 -2.46 16 12 C 0.51 8.40 7.83 -10.98 -0.09 8.31 16 13 O -0.54 -11.02 15.98 5.55 0.09 -10.93 16 14 N -0.73 -9.09 5.48 -60.29 -0.33 -9.42 16 15 C 0.12 1.32 5.40 -4.04 -0.02 1.30 16 16 C 0.07 0.59 3.53 -25.57 -0.09 0.50 16 17 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 18 C -0.12 -0.79 5.77 -25.04 -0.14 -0.94 16 19 C -0.12 -0.69 0.94 -154.59 -0.15 -0.83 16 20 C -0.13 -0.62 7.32 -26.49 -0.19 -0.82 16 21 C -0.14 -0.62 7.97 -25.68 -0.20 -0.82 16 22 C -0.12 -0.60 7.41 -26.49 -0.20 -0.80 16 23 C 0.07 0.48 7.31 37.20 0.27 0.75 16 24 O -0.38 -3.71 10.91 -35.23 -0.38 -4.10 16 25 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 26 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 28 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 29 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.40 4.12 8.41 -40.82 -0.34 3.77 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.46 8.06 -51.93 -0.42 0.04 16 36 H 0.09 0.58 8.04 -51.93 -0.42 0.16 16 37 H 0.09 0.38 8.03 -51.93 -0.42 -0.03 16 38 H 0.07 0.36 8.12 -51.93 -0.42 -0.07 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.36 8.12 -51.93 -0.42 -0.07 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 44 H 0.07 0.45 7.88 -51.93 -0.41 0.04 16 LS Contribution 354.48 15.07 5.34 5.34 Total: -1.00 -34.90 354.48 -8.66 -43.56 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -7.84 Total: -1.71 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.63 Total: -12.23 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.44 Total: -37.42 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.30 Total: -15.02 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.90 -8.66 -43.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894399512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.565 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds