Wall clock time and date at job start Tue Mar 31 2020 05:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47352 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99901 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00338 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 H 1.09007 * 110.31377 * 307.21729 * 16 15 14 18 18 C 1.54752 * 110.36130 * 185.00044 * 16 15 14 19 19 C 1.53458 * 103.63144 * 217.36169 * 18 16 15 20 20 C 1.52643 * 115.84661 * 230.97157 * 19 18 16 21 21 C 1.53990 * 86.73361 * 217.20328 * 20 19 18 22 22 C 1.52652 * 115.82272 * 129.60881 * 19 18 16 23 23 C 1.53441 * 105.20755 * 0.31035 * 19 18 16 24 24 O 1.44513 * 110.35957 * 69.55106 * 16 15 14 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 29 29 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 30 30 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 31 31 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 32 32 H 0.97001 * 119.99493 * 0.02562 * 14 12 11 33 33 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 34 34 H 1.08998 * 109.46734 * 60.00204 * 15 14 12 35 35 H 1.09002 * 110.58892 * 335.89857 * 18 16 15 36 36 H 1.08997 * 110.58782 * 98.67085 * 18 16 15 37 37 H 1.09001 * 113.66991 * 331.66232 * 20 19 18 38 38 H 1.09001 * 113.67630 * 102.74230 * 20 19 18 39 39 H 1.08998 * 113.57630 * 269.97636 * 21 20 19 40 40 H 1.09000 * 113.64974 * 139.19496 * 21 20 19 41 41 H 1.08995 * 113.67567 * 257.27111 * 22 19 18 42 42 H 1.09001 * 113.67205 * 28.36455 * 22 19 18 43 43 H 1.08997 * 110.42163 * 141.96137 * 23 19 18 44 44 H 1.09004 * 110.42355 * 264.30869 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4595 -6.1326 -0.0005 13 8 3.6519 -5.9110 -0.0001 14 7 2.0103 -7.4033 -0.0004 15 6 2.9622 -8.5168 -0.0004 16 6 2.1972 -9.8418 -0.0009 17 1 1.4723 -9.8606 0.8130 18 6 3.1796 -11.0308 0.1256 19 6 2.5664 -12.1049 -0.7828 20 6 2.3871 -13.4845 -0.1547 21 6 2.7734 -14.0631 -1.5285 22 6 3.5155 -12.7404 -1.7954 23 6 1.2990 -11.4645 -1.3643 24 8 1.5363 -10.0403 -1.2706 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.8719 -3.6044 -0.8906 29 1 2.8719 -3.6044 0.8894 30 1 0.8533 -5.0451 0.8886 31 1 0.8539 -5.0446 -0.8913 32 1 1.0566 -7.5805 -0.0011 33 1 3.5888 -8.4591 -0.8904 34 1 3.5888 -8.4590 0.8896 35 1 4.1708 -10.7486 -0.2296 36 1 3.2282 -11.3798 1.1571 37 1 3.1092 -13.7046 0.6316 38 1 1.3600 -13.7018 0.1386 39 1 1.9212 -14.2257 -2.1883 40 1 3.4330 -14.9288 -1.4685 41 1 3.3882 -12.3645 -2.8105 42 1 4.5567 -12.7502 -1.4731 43 1 1.1665 -11.7605 -2.4050 44 1 0.4260 -11.7462 -0.7756 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894399513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:18 Heat of formation + Delta-G solvation = -88.756110 kcal Electronic energy + Delta-G solvation = -21415.826041 eV Core-core repulsion = 18139.735989 eV Total energy + Delta-G solvation = -3276.090052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02580 -39.34048 -37.48747 -34.69831 -34.06576 -32.05064 -31.44850 -29.21977 -27.76959 -26.27669 -25.76039 -23.72427 -22.90771 -21.60034 -20.51862 -19.63299 -19.11796 -17.02816 -16.70835 -16.22123 -16.05289 -15.89089 -15.57531 -15.19736 -14.89564 -14.38028 -14.18808 -13.79078 -13.54894 -13.35558 -12.99640 -12.55051 -12.34869 -12.21642 -12.07790 -11.88621 -11.68667 -11.41984 -11.26077 -10.92367 -10.76378 -10.69692 -10.64423 -10.53902 -10.49565 -10.08053 -9.62252 -9.61651 -9.20911 -8.96351 -8.94795 -8.27841 -5.93608 -3.94702 3.00814 3.27101 3.37678 3.43222 3.48149 3.50804 3.88837 3.99059 4.19025 4.33740 4.50222 4.52855 4.58588 4.74846 4.84659 5.03006 5.11395 5.22840 5.25663 5.27644 5.31532 5.35785 5.42306 5.45810 5.49661 5.50622 5.59458 5.75340 5.79400 5.80857 5.83132 5.91068 6.33395 6.44466 6.55167 6.79630 6.99942 7.22549 7.68356 7.76393 7.89442 8.07584 8.51412 8.54021 9.12449 9.68869 11.17906 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.059443 B = 0.002217 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.924768 B =12625.441948 C =12821.881784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.513 3.487 13 O -0.541 6.541 14 N -0.737 5.737 15 C 0.127 3.873 16 C 0.063 3.937 17 H 0.076 0.924 18 C -0.134 4.134 19 C -0.118 4.118 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.125 4.125 23 C 0.069 3.931 24 O -0.364 6.364 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.402 0.598 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.098 -31.211 -0.480 31.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.178 4.178 12 C 0.301 3.699 13 O -0.417 6.417 14 N -0.390 5.390 15 C 0.003 3.997 16 C 0.005 3.995 17 H 0.094 0.906 18 C -0.172 4.172 19 C -0.118 4.118 20 C -0.164 4.164 21 C -0.181 4.181 22 C -0.163 4.163 23 C -0.008 4.008 24 O -0.283 6.283 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.236 0.764 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.775 -30.752 -0.644 30.883 hybrid contribution -0.052 0.590 0.164 0.615 sum 2.724 -30.161 -0.480 30.288 Atomic orbital electron populations 1.69968 1.06017 1.26474 1.51300 1.25032 0.94872 0.99248 0.95466 0.86587 0.79895 0.83432 0.78059 1.20712 1.19851 1.21289 1.21283 0.93193 0.91031 1.49987 0.92581 1.19139 0.93993 0.91473 0.97126 1.21442 0.98621 0.91576 1.01652 1.21834 0.98146 0.94062 1.03754 1.21260 0.90370 0.83708 0.74595 1.90668 1.17377 1.84776 1.48893 1.46057 1.10118 1.05621 1.77245 1.21346 0.91943 0.83513 1.02930 1.23316 0.94067 0.94769 0.87307 0.90610 1.22800 0.99854 0.94061 1.00482 1.22500 0.97105 0.94818 0.97378 1.22835 1.02095 0.94315 0.97129 1.22918 1.00545 0.97362 0.97238 1.22841 0.98449 0.95841 0.99149 1.23077 0.95104 0.80964 1.01672 1.89261 1.79125 1.22880 1.37061 0.93113 0.96620 0.96578 0.92728 0.92741 0.89417 0.89331 0.76423 0.90869 0.90360 0.89868 0.89915 0.89663 0.91116 0.90111 0.91288 0.90953 0.89717 0.88923 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.52 -15.25 9.11 -34.44 -0.31 -15.57 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.39 16 10 C -0.09 -2.12 4.44 -26.73 -0.12 -2.24 16 11 C -0.14 -2.40 5.70 -27.88 -0.16 -2.56 16 12 C 0.51 8.71 7.83 -10.99 -0.09 8.62 16 13 O -0.54 -11.29 15.98 5.56 0.09 -11.20 16 14 N -0.74 -9.47 5.56 -60.30 -0.33 -9.80 16 15 C 0.13 1.43 5.28 -4.04 -0.02 1.41 16 16 C 0.06 0.55 3.34 -25.81 -0.09 0.46 16 17 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 18 C -0.13 -0.92 6.14 -25.57 -0.16 -1.08 16 19 C -0.12 -0.74 1.17 -154.42 -0.18 -0.92 16 20 C -0.13 -0.63 7.30 -26.40 -0.19 -0.82 16 21 C -0.14 -0.70 7.95 -25.71 -0.20 -0.90 16 22 C -0.13 -0.75 7.22 -26.39 -0.19 -0.94 16 23 C 0.07 0.50 6.90 37.39 0.26 0.76 16 24 O -0.36 -3.74 11.35 -35.23 -0.40 -4.14 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 29 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.40 4.24 8.47 -40.82 -0.35 3.89 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.60 7.71 -51.93 -0.40 0.20 16 36 H 0.08 0.47 7.97 -51.93 -0.41 0.05 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.32 8.05 -51.93 -0.42 -0.09 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.62 7.92 -51.93 -0.41 0.20 16 44 H 0.06 0.40 8.04 -51.93 -0.42 -0.02 16 LS Contribution 357.87 15.07 5.39 5.39 Total: -1.00 -34.25 357.87 -9.08 -43.33 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -7.86 Total: -2.29 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.69 Total: -11.87 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.40 Total: -36.56 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.31 Total: -15.35 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.25 -9.08 -43.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894399513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.424 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds