Wall clock time and date at job start Tue Mar 31 2020 05:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47352 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99901 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00338 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 H 1.09007 * 110.31377 * 307.21729 * 16 15 14 18 18 C 1.54752 * 110.36130 * 185.00044 * 16 15 14 19 19 C 1.53458 * 103.63144 * 217.36169 * 18 16 15 20 20 C 1.52643 * 115.84661 * 230.97157 * 19 18 16 21 21 C 1.53990 * 86.73361 * 217.20328 * 20 19 18 22 22 C 1.52652 * 115.82272 * 129.60881 * 19 18 16 23 23 C 1.53441 * 105.20755 * 0.31035 * 19 18 16 24 24 O 1.44513 * 110.35957 * 69.55106 * 16 15 14 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 29 29 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 30 30 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 31 31 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 32 32 H 0.97001 * 119.99493 * 0.02562 * 14 12 11 33 33 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 34 34 H 1.08998 * 109.46734 * 60.00204 * 15 14 12 35 35 H 1.09002 * 110.58892 * 335.89857 * 18 16 15 36 36 H 1.08997 * 110.58782 * 98.67085 * 18 16 15 37 37 H 1.09001 * 113.66991 * 331.66232 * 20 19 18 38 38 H 1.09001 * 113.67630 * 102.74230 * 20 19 18 39 39 H 1.08998 * 113.57630 * 269.97636 * 21 20 19 40 40 H 1.09000 * 113.64974 * 139.19496 * 21 20 19 41 41 H 1.08995 * 113.67567 * 257.27111 * 22 19 18 42 42 H 1.09001 * 113.67205 * 28.36455 * 22 19 18 43 43 H 1.08997 * 110.42163 * 141.96137 * 23 19 18 44 44 H 1.09004 * 110.42355 * 264.30869 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4595 -6.1326 -0.0005 13 8 3.6519 -5.9110 -0.0001 14 7 2.0103 -7.4033 -0.0004 15 6 2.9622 -8.5168 -0.0004 16 6 2.1972 -9.8418 -0.0009 17 1 1.4723 -9.8606 0.8130 18 6 3.1796 -11.0308 0.1256 19 6 2.5664 -12.1049 -0.7828 20 6 2.3871 -13.4845 -0.1547 21 6 2.7734 -14.0631 -1.5285 22 6 3.5155 -12.7404 -1.7954 23 6 1.2990 -11.4645 -1.3643 24 8 1.5363 -10.0403 -1.2706 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.8719 -3.6044 -0.8906 29 1 2.8719 -3.6044 0.8894 30 1 0.8533 -5.0451 0.8886 31 1 0.8539 -5.0446 -0.8913 32 1 1.0566 -7.5805 -0.0011 33 1 3.5888 -8.4591 -0.8904 34 1 3.5888 -8.4590 0.8896 35 1 4.1708 -10.7486 -0.2296 36 1 3.2282 -11.3798 1.1571 37 1 3.1092 -13.7046 0.6316 38 1 1.3600 -13.7018 0.1386 39 1 1.9212 -14.2257 -2.1883 40 1 3.4330 -14.9288 -1.4685 41 1 3.3882 -12.3645 -2.8105 42 1 4.5567 -12.7502 -1.4731 43 1 1.1665 -11.7605 -2.4050 44 1 0.4260 -11.7462 -0.7756 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894399513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:18 Heat of formation + Delta-G solvation = -111.025875 kcal Electronic energy + Delta-G solvation = -21416.791731 eV Core-core repulsion = 18139.735989 eV Total energy + Delta-G solvation = -3277.055742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.60021 -40.64239 -38.12768 -36.20647 -35.66187 -34.02866 -32.29096 -30.25475 -29.20626 -26.82123 -26.68276 -25.38927 -23.59992 -22.33854 -22.23097 -21.08286 -19.61977 -18.62822 -17.82585 -17.57253 -17.06798 -16.69837 -16.50909 -16.44987 -16.15550 -15.66753 -15.15583 -14.76840 -14.64248 -14.25370 -14.21554 -13.81275 -13.71486 -13.51384 -13.06185 -12.94296 -12.62895 -12.57448 -12.51746 -12.46834 -12.35084 -11.89961 -11.55354 -11.46988 -11.41366 -11.27334 -11.16507 -11.09386 -10.75162 -10.68406 -10.54046 -10.12194 -8.19872 -6.29832 1.39546 1.40991 1.52594 1.65320 2.18986 2.42352 2.81712 3.12780 3.37541 3.51408 3.68244 3.87054 3.93577 3.95563 4.00480 4.09401 4.23218 4.27248 4.35252 4.49485 4.55589 4.63964 4.75007 4.80795 4.82691 4.85832 4.88870 4.95689 4.97914 5.03786 5.10839 5.11395 5.13517 5.19627 5.35461 5.43669 5.51535 5.54973 5.75838 5.84017 5.87199 6.27835 6.54256 6.85452 7.26356 7.38556 8.91652 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.059443 B = 0.002217 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.924768 B =12625.441948 C =12821.881784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.278 1.278 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.025 3.975 10 C -0.082 4.082 11 C -0.130 4.130 12 C 0.515 3.485 13 O -0.586 6.586 14 N -0.717 5.717 15 C 0.125 3.875 16 C 0.069 3.931 17 H 0.093 0.907 18 C -0.132 4.132 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.140 4.140 22 C -0.132 4.132 23 C 0.064 3.936 24 O -0.392 6.392 25 H 0.265 0.735 26 H 0.002 0.998 27 H 0.000 1.000 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.416 0.584 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 -32.474 0.069 32.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.069 0.931 9 C -0.012 4.012 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.303 3.697 13 O -0.466 6.466 14 N -0.370 5.370 15 C 0.002 3.998 16 C 0.011 3.989 17 H 0.110 0.890 18 C -0.170 4.170 19 C -0.119 4.119 20 C -0.157 4.157 21 C -0.177 4.177 22 C -0.169 4.169 23 C -0.012 4.012 24 O -0.312 6.312 25 H 0.073 0.927 26 H 0.020 0.980 27 H 0.019 0.981 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.252 0.748 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.505 -32.065 -0.094 32.162 hybrid contribution -0.011 0.937 -0.036 0.938 sum 2.494 -31.127 -0.130 31.227 Atomic orbital electron populations 1.70072 1.07489 1.27779 1.51573 1.25937 0.95877 1.03140 0.94718 0.85474 0.78578 0.78594 0.78563 1.19635 1.19325 1.20283 1.21691 0.93342 0.92798 1.50709 0.93058 1.19028 0.94211 0.92394 0.95545 1.21164 0.97640 0.92982 1.00280 1.21673 0.97920 0.91695 1.05699 1.21070 0.89396 0.84827 0.74388 1.90656 1.19007 1.85543 1.51421 1.45880 1.11282 1.04710 1.75131 1.21461 0.91921 0.84222 1.02241 1.23312 0.94545 0.93646 0.87365 0.88975 1.22819 0.99046 0.93467 1.01653 1.22510 0.96649 0.95276 0.97494 1.22829 1.02765 0.92911 0.97209 1.22915 1.00571 0.96909 0.97300 1.22886 0.98681 0.96721 0.98600 1.23235 0.96049 0.79630 1.02279 1.89225 1.79392 1.24740 1.37794 0.92662 0.97953 0.98148 0.94275 0.93931 0.87189 0.87673 0.74767 0.92712 0.89977 0.90520 0.88203 0.88988 0.90375 0.89737 0.90701 0.91907 0.89617 0.88717 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.96 45.86 29.54 68.60 2.03 47.89 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 7 C -0.55 -32.82 9.11 25.60 0.23 -32.59 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.08 -3.75 4.44 30.59 0.14 -3.62 16 11 C -0.13 -4.43 5.70 29.85 0.17 -4.26 16 12 C 0.52 17.24 7.83 87.66 0.69 17.92 16 13 O -0.59 -24.75 15.98 -3.03 -0.05 -24.80 16 14 N -0.72 -17.54 5.56 -463.07 -2.57 -20.11 16 15 C 0.13 2.72 5.28 86.38 0.46 3.18 16 16 C 0.07 1.08 3.34 31.19 0.10 1.19 16 17 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 18 C -0.13 -1.59 6.14 31.35 0.19 -1.40 16 19 C -0.12 -1.30 1.17 -52.13 -0.06 -1.36 16 20 C -0.12 -0.90 7.30 30.81 0.22 -0.68 16 21 C -0.14 -1.10 7.95 31.25 0.25 -0.85 16 22 C -0.13 -1.42 7.22 30.81 0.22 -1.20 16 23 C 0.06 0.84 6.90 72.13 0.50 1.33 16 24 O -0.39 -7.55 11.35 -148.98 -1.69 -9.24 16 25 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 26 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 27 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 29 H 0.04 2.00 8.10 -2.39 -0.02 1.98 16 30 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 31 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.42 7.92 8.47 -92.71 -0.79 7.14 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 1.03 7.71 -2.39 -0.02 1.01 16 36 H 0.10 0.86 7.97 -2.39 -0.02 0.85 16 37 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.08 0.49 8.05 -2.39 -0.02 0.48 16 39 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.06 0.78 8.05 -2.39 -0.02 0.77 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.09 1.15 7.92 -2.39 -0.02 1.13 16 44 H 0.08 0.79 8.04 -2.39 -0.02 0.77 16 Total: -1.00 -74.00 357.87 1.90 -72.11 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.18 Total: 11.28 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 3.72 Total: -20.27 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -2.29 Total: -76.96 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -1.74 Total: -34.04 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -74.00 1.90 -72.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894399513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.919 kcal (2) G-P(sol) polarization free energy of solvation -74.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds