Wall clock time and date at job start Tue Mar 31 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99893 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47073 * 179.97438 * 14 13 11 16 16 H 1.09004 * 109.43513 * 59.99345 * 15 14 13 17 17 C 1.53069 * 109.43709 * 179.90782 * 15 14 13 18 18 C 1.53351 * 109.08317 * 179.47928 * 17 15 14 19 19 C 1.52847 * 108.74373 * 305.15086 * 18 17 15 20 20 C 1.53363 * 113.53898 * 282.26097 * 19 18 17 21 21 C 1.53855 * 86.95138 * 220.08988 * 20 19 18 22 22 C 1.53323 * 113.59578 * 184.28238 * 19 18 17 23 23 C 1.52750 * 112.68831 * 53.20959 * 19 18 17 24 24 O 1.42869 * 109.43101 * 300.09145 * 15 14 13 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 29 29 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 30 30 H 0.96991 * 119.99641 * 0.02562 * 13 11 10 31 31 H 1.09002 * 109.46901 * 299.99583 * 14 13 11 32 32 H 1.08998 * 109.47473 * 60.00153 * 14 13 11 33 33 H 1.09004 * 109.53392 * 299.36344 * 17 15 14 34 34 H 1.08998 * 109.53516 * 59.51859 * 17 15 14 35 35 H 1.09000 * 109.58852 * 64.92233 * 18 17 15 36 36 H 1.08997 * 109.58834 * 185.21940 * 18 17 15 37 37 H 1.09007 * 113.63210 * 334.60034 * 20 19 18 38 38 H 1.09000 * 113.63608 * 105.56836 * 20 19 18 39 39 H 1.09005 * 113.59876 * 270.54107 * 21 20 19 40 40 H 1.09001 * 113.60443 * 139.67810 * 21 20 19 41 41 H 1.09002 * 113.63336 * 254.37110 * 22 19 18 42 42 H 1.09001 * 113.63691 * 25.33735 * 22 19 18 43 43 H 1.09000 * 109.52862 * 66.27808 * 23 19 18 44 44 H 1.09002 * 109.52577 * 186.41658 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2789 -4.9672 0.0010 13 7 2.1656 -6.1344 -0.0003 14 6 1.4331 -7.4031 -0.0003 15 6 2.4273 -8.5661 -0.0014 16 1 3.0543 -8.5081 0.8883 17 6 1.6611 -9.8912 0.0010 18 6 2.6647 -11.0506 -0.0134 19 6 3.6045 -10.8720 -1.2055 20 6 2.9800 -11.2823 -2.5447 21 6 4.3455 -11.8958 -2.8998 22 6 4.5924 -12.0304 -1.3871 23 6 4.2637 -9.4944 -1.2348 24 8 3.2487 -8.4880 -1.1677 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.8719 -3.6044 -0.8906 29 1 2.8719 -3.6044 0.8894 30 1 3.1355 -6.1344 -0.0006 31 1 0.8068 -7.4610 0.8900 32 1 0.8061 -7.4608 -0.8900 33 1 1.0443 -9.9540 0.8975 34 1 1.0258 -9.9465 -0.8830 35 1 3.2420 -11.0457 0.9111 36 1 2.1297 -11.9959 -0.1052 37 1 2.1821 -12.0187 -2.4474 38 1 2.7032 -10.4372 -3.1750 39 1 5.0227 -11.1979 -3.3921 40 1 4.2729 -12.8526 -3.4171 41 1 5.6116 -11.7866 -1.0874 42 1 4.2411 -12.9739 -0.9693 43 1 4.9348 -9.3933 -0.3818 44 1 4.8299 -9.3810 -2.1593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894526322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:52 Heat of formation + Delta-G solvation = -89.209085 kcal Electronic energy + Delta-G solvation = -21979.680003 eV Core-core repulsion = 18703.570308 eV Total energy + Delta-G solvation = -3276.109695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89094 -39.05846 -37.61368 -34.44323 -33.38028 -33.14870 -31.05080 -29.87352 -27.02812 -26.04468 -25.55908 -24.52393 -22.63741 -21.32410 -21.20102 -19.51871 -18.81873 -16.90159 -16.70185 -16.24323 -15.85116 -15.74819 -15.44899 -14.87548 -14.44816 -14.41331 -14.21855 -14.07801 -13.32761 -12.99813 -12.91463 -12.81983 -12.70242 -12.14387 -12.00382 -11.88667 -11.67797 -11.42793 -11.16674 -11.08731 -10.87321 -10.79626 -10.58107 -10.36911 -10.27588 -9.88519 -9.70607 -9.60181 -9.11918 -8.93626 -8.67559 -8.26955 -5.91436 -3.95578 3.33479 3.37652 3.41756 3.42896 3.44024 3.63642 4.14422 4.16873 4.25727 4.48003 4.51186 4.59712 4.67324 4.72794 4.87339 5.05821 5.15013 5.26157 5.28348 5.30906 5.36913 5.43203 5.43387 5.53286 5.58591 5.62043 5.67622 5.71097 5.76008 5.89913 5.97290 6.03679 6.07279 6.31109 6.33465 6.79811 6.97433 6.98209 7.79428 7.92918 8.00747 8.12980 8.44418 8.88142 9.13239 9.67470 11.19559 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039302 B = 0.002634 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.264204 B =10629.306603 C =11006.659148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.509 3.491 12 O -0.538 6.538 13 N -0.739 5.739 14 C 0.129 3.871 15 C 0.081 3.919 16 H 0.063 0.937 17 C -0.146 4.146 18 C -0.103 4.103 19 C -0.119 4.119 20 C -0.126 4.126 21 C -0.144 4.144 22 C -0.129 4.129 23 C 0.086 3.914 24 O -0.368 6.368 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.400 0.600 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.225 -27.408 -1.531 29.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.298 3.702 12 O -0.414 6.414 13 N -0.393 5.393 14 C 0.005 3.995 15 C 0.023 3.977 16 H 0.081 0.919 17 C -0.185 4.185 18 C -0.141 4.141 19 C -0.119 4.119 20 C -0.164 4.164 21 C -0.181 4.181 22 C -0.167 4.167 23 C 0.009 3.991 24 O -0.287 6.287 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.233 0.767 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.127 -27.131 -1.673 28.674 hybrid contribution 0.974 0.555 0.200 1.139 sum 10.102 -26.576 -1.473 28.469 Atomic orbital electron populations 1.69993 1.06049 1.26634 1.50232 1.25032 0.94830 0.99202 0.95372 0.86649 0.79532 0.83195 0.78522 1.21314 1.20275 1.20262 1.21203 0.92896 0.91065 1.51328 0.92667 1.18892 0.93193 0.89368 0.98587 1.21848 1.00682 0.91975 1.02438 1.21546 0.88615 0.85673 0.74397 1.90661 1.14503 1.87702 1.48536 1.46072 1.10206 1.05229 1.77764 1.21265 0.93623 0.81914 1.02746 1.22336 0.92202 0.94570 0.88626 0.91900 1.22127 0.98628 0.94183 1.03520 1.21513 0.96701 0.98419 0.97426 1.22247 0.97415 0.96026 0.96260 1.22859 0.96643 1.00682 0.96169 1.22882 0.97875 1.01141 0.96232 1.22864 0.99069 0.98065 0.96691 1.22318 0.89403 0.85207 1.02180 1.88048 1.46202 1.51568 1.42857 0.92931 0.95866 0.95829 0.90245 0.90353 0.76661 0.90503 0.91150 0.90522 0.90538 0.91749 0.91261 0.90223 0.90865 0.90122 0.91527 0.91404 0.89953 0.92916 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.92 13.29 55.43 0.74 -27.19 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -15.27 9.11 -34.44 -0.31 -15.58 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 10 C -0.13 -2.74 5.64 -27.89 -0.16 -2.89 16 11 C 0.51 10.29 7.83 -10.98 -0.09 10.21 16 12 O -0.54 -13.19 15.98 5.56 0.09 -13.10 16 13 N -0.74 -11.18 5.45 -60.29 -0.33 -11.50 16 14 C 0.13 1.69 5.36 -4.04 -0.02 1.67 16 15 C 0.08 0.80 2.67 -26.69 -0.07 0.73 16 16 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 17 C -0.15 -1.20 5.36 -26.51 -0.14 -1.34 16 18 C -0.10 -0.71 5.20 -26.63 -0.14 -0.85 16 19 C -0.12 -0.84 0.85 -154.36 -0.13 -0.97 16 20 C -0.13 -0.92 7.12 -26.10 -0.19 -1.10 16 21 C -0.14 -0.88 7.73 -25.84 -0.20 -1.08 16 22 C -0.13 -0.76 7.23 -26.12 -0.19 -0.95 16 23 C 0.09 0.70 5.93 37.03 0.22 0.92 16 24 O -0.37 -4.00 10.15 -35.23 -0.36 -4.36 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 27 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.40 5.07 8.34 -40.82 -0.34 4.72 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.43 8.04 -51.93 -0.42 0.02 16 37 H 0.08 0.55 8.02 -51.92 -0.42 0.13 16 38 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.08 0.48 7.64 -51.93 -0.40 0.08 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 42 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.10 0.72 7.34 -51.93 -0.38 0.34 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -34.36 352.81 -9.02 -43.38 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.82 Total: -0.78 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.63 Total: -8.75 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.41 Total: -38.69 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.27 Total: -17.46 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.36 -9.02 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894526322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.832 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds