Wall clock time and date at job start Tue Mar 31 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47432 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47481 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46573 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00072 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99762 * 180.02562 * 13 12 11 16 16 C 1.47386 * 125.71071 * 179.71846 * 15 13 12 17 17 C 1.54922 * 104.92223 * 155.00608 * 16 15 13 18 18 H 1.09001 * 113.57683 * 275.20140 * 17 16 15 19 19 C 1.53801 * 108.80871 * 147.16792 * 17 16 15 20 20 H 1.09003 * 109.90041 * 154.12069 * 19 17 16 21 21 O 1.42897 * 109.90519 * 33.06107 * 19 17 16 22 22 C 1.53700 * 107.14718 * 273.49873 * 19 17 16 23 23 C 1.55357 * 107.06335 * 0.58665 * 22 19 17 24 24 C 1.54484 * 104.21898 * 337.73758 * 23 22 19 25 25 H 1.09006 * 113.37735 * 271.17172 * 24 23 22 26 26 C 1.47069 * 125.70840 * 0.02562 * 15 13 12 27 27 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 28 28 H 1.08996 * 109.47197 * 300.00354 * 9 7 2 29 29 H 1.09004 * 109.47476 * 59.99997 * 9 7 2 30 30 H 1.08996 * 109.47340 * 300.00415 * 10 9 7 31 31 H 1.09000 * 109.46925 * 60.00107 * 10 9 7 32 32 H 1.09001 * 109.46611 * 300.00296 * 11 10 9 33 33 H 1.09000 * 109.46866 * 60.00179 * 11 10 9 34 34 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 35 35 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 36 36 H 1.09002 * 110.33054 * 273.98896 * 16 15 13 37 37 H 1.09004 * 110.32958 * 36.20210 * 16 15 13 38 38 H 0.96703 * 114.00354 * 180.02562 * 21 19 17 39 39 H 1.09001 * 110.01907 * 120.50809 * 22 19 17 40 40 H 1.09000 * 110.01924 * 241.89925 * 22 19 17 41 41 H 1.08996 * 111.17603 * 218.83721 * 23 22 19 42 42 H 1.09003 * 110.14490 * 96.11627 * 23 22 19 43 43 H 1.09004 * 109.84062 * 301.47165 * 26 15 13 44 44 H 1.09004 * 109.84019 * 62.47684 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 6 4.0214 -2.6367 -0.0114 11 6 5.5515 -2.6368 -0.0115 12 6 6.0613 -4.0793 -0.0185 13 6 7.5684 -4.0793 -0.0179 14 8 8.1748 -3.0291 -0.0129 15 7 8.2422 -5.2466 -0.0239 16 6 9.7087 -5.3933 -0.0300 17 6 9.9731 -6.7849 0.5973 18 1 10.0036 -6.7733 1.6868 19 6 11.2258 -7.3932 -0.0554 20 1 11.6943 -8.1007 0.6288 21 8 12.1507 -6.3573 -0.3921 22 6 10.7652 -8.1224 -1.3276 23 6 9.2273 -7.9286 -1.4326 24 6 8.7848 -7.6146 0.0138 25 1 8.5456 -8.5047 0.5958 26 6 7.6371 -6.5870 -0.0320 27 1 -0.4850 0.8401 0.0040 28 1 3.8752 -0.6760 -0.8923 29 1 3.8746 -0.6849 0.8876 30 1 3.6577 -3.1546 0.8760 31 1 3.6584 -3.1464 -0.9039 32 1 5.9147 -2.1190 -0.8992 33 1 5.9148 -2.1269 0.8808 34 1 5.6981 -4.5974 0.8691 35 1 5.6980 -4.5889 -0.9109 36 1 10.0887 -5.3572 -1.0511 37 1 10.1700 -4.6120 0.5742 38 1 12.9634 -6.6756 -0.8085 39 1 11.2610 -7.6986 -2.2009 40 1 10.9900 -9.1862 -1.2501 41 1 8.7397 -8.8354 -1.7902 42 1 8.9987 -7.0895 -2.0898 43 1 6.9963 -6.7089 0.8414 44 1 7.0538 -6.7241 -0.9425 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899388006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:05 Heat of formation + Delta-G solvation = -108.228055 kcal Electronic energy + Delta-G solvation = -21980.336137 eV Core-core repulsion = 18703.401717 eV Total energy + Delta-G solvation = -3276.934419 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.52 seconds Orbital eigenvalues (eV) -40.94801 -38.96616 -36.68423 -34.98585 -34.10399 -32.54462 -30.68492 -29.89550 -29.40883 -26.59650 -25.57977 -23.78323 -21.71858 -21.15538 -20.02690 -19.94442 -19.09965 -17.52493 -17.16493 -16.72029 -16.44945 -15.77399 -15.49730 -14.94302 -14.54786 -14.12979 -13.87215 -13.68619 -13.35627 -13.14078 -12.81989 -12.72883 -12.51014 -12.27857 -12.09885 -11.99011 -11.69074 -11.36665 -11.20675 -11.11002 -11.05362 -10.89410 -10.68272 -10.48695 -10.38174 -9.89632 -9.76061 -9.60329 -9.36612 -9.08399 -8.71724 -8.46425 -5.97833 -3.95012 2.73570 2.91722 3.38044 3.44857 3.51645 3.56975 3.78420 4.05563 4.31904 4.53051 4.57473 4.65031 4.78584 4.79408 4.87146 4.97354 5.04025 5.11292 5.28528 5.30278 5.33734 5.35839 5.37743 5.46029 5.50903 5.65749 5.75829 5.79177 5.83857 5.90542 6.08513 6.13104 6.25498 6.47046 6.73255 6.86973 7.03545 7.20643 7.42075 7.46737 7.55073 7.87959 8.24661 8.61424 9.07259 9.65768 11.15690 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042085 B = 0.002676 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.162018 B =10462.786345 C =10904.443096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.264 1.264 6 H -0.289 1.289 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.133 4.133 13 C 0.528 3.472 14 O -0.536 6.536 15 N -0.628 5.628 16 C 0.126 3.874 17 C -0.098 4.098 18 H 0.100 0.900 19 C 0.110 3.890 20 H 0.061 0.939 21 O -0.561 6.561 22 C -0.157 4.157 23 C -0.117 4.117 24 C -0.101 4.101 25 H 0.106 0.894 26 C 0.105 3.895 27 H 0.262 0.738 28 H 0.016 0.984 29 H 0.011 0.989 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.378 0.622 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.326 -22.231 -1.081 32.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.189 1.189 6 H -0.215 1.215 7 C -0.556 4.556 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.139 4.139 11 C -0.145 4.145 12 C -0.173 4.173 13 C 0.318 3.682 14 O -0.412 6.412 15 N -0.364 5.364 16 C 0.003 3.997 17 C -0.117 4.117 18 H 0.118 0.882 19 C 0.051 3.949 20 H 0.079 0.921 21 O -0.367 6.367 22 C -0.195 4.195 23 C -0.155 4.155 24 C -0.120 4.120 25 H 0.124 0.876 26 C -0.018 4.018 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.225 0.775 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 23.973 -21.067 -0.840 31.925 hybrid contribution 0.750 0.344 -0.223 0.855 sum 24.723 -20.723 -1.063 32.277 Atomic orbital electron populations 1.69926 1.06304 1.26792 1.51584 1.25045 0.94738 0.99230 0.94635 0.86772 0.80455 0.83527 0.78541 1.20326 1.18865 1.21474 1.21190 0.89680 0.94367 1.50399 0.91119 1.19579 0.96876 0.92531 0.96332 1.21469 0.91697 0.99890 1.00883 1.21497 0.97174 0.92890 1.02907 1.21756 0.90020 1.01569 1.03971 1.20771 0.90571 0.81736 0.75172 1.90706 1.70612 1.30490 1.49380 1.48679 1.07262 1.05681 1.74796 1.21982 0.80270 0.96067 1.01344 1.23130 0.92855 0.95573 1.00112 0.88169 1.22197 0.89557 0.88556 0.94624 0.92113 1.86594 1.31964 1.35148 1.83006 1.23068 0.97002 1.00817 0.98578 1.22551 0.94807 1.02262 0.95835 1.23084 0.94157 0.97690 0.97083 0.87626 1.22011 0.95675 0.81835 1.02285 0.92847 0.96605 0.97047 0.92888 0.92879 0.91807 0.91797 0.89142 0.89162 0.90830 0.90519 0.77490 0.90627 0.91169 0.90792 0.90909 0.91088 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.72 13.96 55.43 0.77 -27.94 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.72 27.47 -169.99 -4.67 18.05 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.26 -6.64 6.53 56.52 0.37 -6.27 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.52 -15.31 9.66 -34.44 -0.33 -15.64 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.02 -0.40 4.04 -27.89 -0.11 -0.51 16 10 C -0.10 -2.07 5.15 -26.73 -0.14 -2.21 16 11 C -0.11 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.13 -1.85 4.90 -27.88 -0.14 -1.99 16 13 C 0.53 8.01 7.85 -10.98 -0.09 7.92 16 14 O -0.54 -10.41 16.23 5.56 0.09 -10.32 16 15 N -0.63 -7.38 3.32 -170.63 -0.57 -7.94 16 16 C 0.13 1.38 5.09 -2.54 -0.01 1.37 16 17 C -0.10 -0.73 4.15 -87.45 -0.36 -1.09 16 18 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 19 C 0.11 0.64 3.90 -25.95 -0.10 0.54 16 20 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 21 O -0.56 -3.95 11.78 -35.23 -0.41 -4.37 16 22 C -0.16 -0.76 6.55 -25.12 -0.16 -0.92 16 23 C -0.12 -0.65 5.70 -24.70 -0.14 -0.79 16 24 C -0.10 -0.60 4.09 -87.52 -0.36 -0.96 16 25 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 26 C 0.11 0.83 5.76 -3.15 -0.02 0.82 16 27 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 28 H 0.02 0.40 7.19 -51.93 -0.37 0.03 16 29 H 0.01 0.28 7.58 -51.93 -0.39 -0.11 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.86 6.92 -51.93 -0.36 0.50 16 37 H 0.08 1.02 8.02 -51.93 -0.42 0.60 16 38 H 0.38 1.08 9.11 45.56 0.41 1.49 16 39 H 0.08 0.38 7.95 -51.93 -0.41 -0.03 16 40 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.53 7.40 -51.93 -0.38 0.14 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.53 7.82 -51.93 -0.41 0.12 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -35.96 346.23 -8.74 -44.70 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -6.99 Total: -3.76 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -2.18 Total: -13.63 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.21 Total: -35.89 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.32 Total: -14.69 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.67 Total: 18.05 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.96 -8.74 -44.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899388006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.526 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.52 seconds