Wall clock time and date at job start Tue Mar 31 2020 06:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 10 14 14 O 1.21288 * 120.00038 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00369 * 180.02562 * 13 12 11 16 16 C 1.46896 * 120.49157 * 359.72051 * 15 13 12 17 17 C 1.53779 * 108.51431 * 124.31950 * 16 15 13 18 18 C 1.52592 * 109.11911 * 52.51988 * 17 16 15 19 19 C 1.53543 * 113.66262 * 170.82101 * 18 17 16 20 20 C 1.54119 * 85.65193 * 268.12085 * 19 18 17 21 21 O 1.43594 * 113.70640 * 74.48752 * 18 17 16 22 22 C 1.52599 * 113.34466 * 302.59766 * 18 17 16 23 23 C 1.46897 * 120.49774 * 180.02562 * 15 13 12 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 32 32 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 33 33 H 1.09002 * 109.58886 * 244.13452 * 16 15 13 34 34 H 1.08998 * 109.59393 * 4.57335 * 16 15 13 35 35 H 1.09005 * 109.65304 * 292.56944 * 17 16 15 36 36 H 1.08998 * 109.49861 * 172.37934 * 17 16 15 37 37 H 1.09002 * 113.84805 * 22.30462 * 19 18 17 38 38 H 1.09008 * 113.84328 * 153.81477 * 19 18 17 39 39 H 1.09002 * 113.84937 * 91.95655 * 20 19 18 40 40 H 1.08999 * 113.85601 * 223.62107 * 20 19 18 41 41 H 1.08994 * 109.51624 * 297.36353 * 22 18 17 42 42 H 1.09002 * 109.56828 * 177.21906 * 22 18 17 43 43 H 1.08998 * 109.58777 * 355.41934 * 23 15 13 44 44 H 1.08994 * 109.59491 * 115.71562 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 6 1.7208 -7.4551 -0.0018 14 8 0.5079 -7.4551 -0.0018 15 7 2.3946 -8.6224 -0.0018 16 6 3.8635 -8.6351 -0.0080 17 6 4.3497 -9.4585 1.1963 18 6 3.6647 -10.8218 1.1790 19 6 4.2363 -11.8118 2.2040 20 6 5.1724 -12.2669 1.0674 21 8 4.1794 -11.7139 0.1784 22 6 2.1413 -10.7334 1.1967 23 6 1.6711 -9.9008 -0.0024 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.1003 -6.0924 -0.8922 32 1 3.1016 -6.0924 0.8877 33 1 4.2211 -9.0885 -0.9325 34 1 4.2382 -7.6145 0.0698 35 1 4.1009 -8.9376 2.1210 36 1 5.4296 -9.5927 1.1331 37 1 4.7535 -11.3348 3.0365 38 1 3.5258 -12.5740 2.5242 39 1 6.1265 -11.7403 1.0447 40 1 5.2790 -13.3490 0.9907 41 1 1.8150 -10.2575 2.1214 42 1 1.7167 -11.7353 1.1333 43 1 0.6002 -9.7147 0.0792 44 1 1.8792 -10.4382 -0.9275 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118704425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:25 Heat of formation + Delta-G solvation = -72.605385 kcal Electronic energy + Delta-G solvation = -22033.270181 eV Core-core repulsion = 18757.880477 eV Total energy + Delta-G solvation = -3275.389704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.48605 -39.73045 -36.56071 -34.89476 -32.77978 -32.09680 -31.55197 -29.81276 -29.40970 -26.18783 -25.05151 -23.91439 -22.83393 -21.71432 -20.13367 -19.87683 -18.82842 -17.14519 -16.43814 -16.31811 -16.15745 -15.97786 -15.86129 -15.32275 -14.65209 -14.43388 -14.06283 -13.70432 -13.55702 -13.19635 -12.98627 -12.60036 -12.43746 -12.26509 -11.94803 -11.81826 -11.68626 -11.53795 -11.47633 -11.04751 -10.96607 -10.69664 -10.51431 -10.48131 -10.37416 -9.98908 -9.69804 -9.58540 -9.19491 -8.95842 -8.75935 -8.28623 -5.93429 -3.95871 2.71634 2.89906 3.21272 3.35160 3.41090 3.44234 3.79948 4.20665 4.29340 4.49776 4.55877 4.63363 4.72222 4.81131 4.91586 4.95887 5.07595 5.15330 5.22937 5.30821 5.35118 5.38638 5.41058 5.42107 5.54095 5.57799 5.64271 5.73300 5.79962 5.89376 6.05260 6.16630 6.31028 6.40846 6.58522 6.86995 7.04530 7.22252 7.34702 7.76290 7.92653 8.08286 8.25101 8.49984 9.11905 9.67623 11.17933 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039417 B = 0.002604 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.175940 B =10749.772713 C =11198.519086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.515 3.485 14 O -0.535 6.535 15 N -0.620 5.620 16 C 0.111 3.889 17 C -0.136 4.136 18 C 0.093 3.907 19 C -0.181 4.181 20 C 0.032 3.968 21 O -0.369 6.369 22 C -0.123 4.123 23 C 0.113 3.887 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.496 -26.684 3.717 29.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.141 4.141 12 C -0.178 4.178 13 C 0.304 3.696 14 O -0.411 6.411 15 N -0.355 5.355 16 C -0.012 4.012 17 C -0.175 4.175 18 C 0.053 3.947 19 C -0.218 4.218 20 C -0.045 4.045 21 O -0.288 6.288 22 C -0.161 4.161 23 C -0.010 4.010 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.602 -26.598 3.444 28.840 hybrid contribution 0.678 0.814 0.196 1.078 sum 11.280 -25.784 3.640 28.378 Atomic orbital electron populations 1.69981 1.06045 1.26480 1.50974 1.25048 0.94844 0.99227 0.95498 0.86612 0.79809 0.83614 0.78042 1.20712 1.21267 1.19936 1.21285 0.92967 0.91209 1.50334 0.92772 1.19097 0.94070 0.91266 0.97315 1.21645 0.99062 0.94014 1.00017 1.21462 0.97030 0.92694 1.02956 1.21822 1.00123 0.92098 1.03726 1.21122 0.88222 0.85408 0.74834 1.90692 1.14167 1.87219 1.49056 1.48184 1.06648 1.05973 1.74742 1.21758 0.79762 1.01497 0.98176 1.22147 1.00608 0.94591 1.00110 1.22313 0.94882 0.90654 0.86821 1.24693 0.99236 0.99145 0.98765 1.23848 0.92820 1.00004 0.87792 1.89707 1.49368 1.54496 1.35236 1.21929 0.92793 1.01379 1.00010 1.21493 0.98338 0.83488 0.97685 0.93058 0.96595 0.96590 0.93524 0.93490 0.91832 0.91798 0.89183 0.89218 0.90833 0.88795 0.89722 0.89970 0.90676 0.88709 0.90174 0.89242 0.89890 0.89871 0.88676 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.14 -1.90 4.04 -27.89 -0.11 -2.01 16 13 C 0.51 7.60 7.69 -10.99 -0.08 7.51 16 14 O -0.54 -10.07 15.38 5.55 0.09 -9.98 16 15 N -0.62 -7.14 2.93 -172.35 -0.51 -7.65 16 16 C 0.11 0.96 6.39 -3.42 -0.02 0.93 16 17 C -0.14 -0.97 5.48 -26.54 -0.15 -1.11 16 18 C 0.09 0.72 1.04 -90.97 -0.09 0.62 16 19 C -0.18 -1.04 7.52 -25.87 -0.19 -1.23 16 20 C 0.03 0.19 8.85 37.52 0.33 0.52 16 21 O -0.37 -3.37 12.11 -35.23 -0.43 -3.80 16 22 C -0.12 -1.03 5.55 -26.74 -0.15 -1.18 16 23 C 0.11 1.20 6.45 -3.63 -0.02 1.18 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.09 1.09 7.89 -51.93 -0.41 0.68 16 32 H 0.09 1.06 7.73 -51.93 -0.40 0.65 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.71 5.89 -51.93 -0.31 0.40 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.46 7.51 -51.93 -0.39 0.07 16 37 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 38 H 0.09 0.50 8.09 -51.92 -0.42 0.08 16 39 H 0.08 0.37 7.79 -51.93 -0.40 -0.03 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.16 6.98 -51.93 -0.36 0.79 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -34.42 350.39 -8.88 -43.30 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -7.72 Total: -4.45 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -1.30 Total: -12.70 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.23 Total: -34.64 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.34 Total: -13.78 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.42 -8.88 -43.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118704425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.307 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds