Wall clock time and date at job start Tue Mar 31 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00214 * 2 1 4 4 H 1.48493 * 109.47018 * 269.99948 * 3 2 1 5 5 H 1.48496 * 109.46895 * 30.00193 * 3 2 1 6 6 H 1.48502 * 109.46948 * 150.00128 * 3 2 1 7 7 C 1.37884 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99936 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99669 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.49758 * 60.06938 * 9 7 2 11 11 C 1.53045 * 109.50169 * 300.00671 * 9 7 2 12 12 C 1.53037 * 109.53861 * 178.65088 * 11 9 7 13 13 C 1.53199 * 109.31292 * 61.36394 * 12 11 9 14 14 N 1.46923 * 108.77498 * 305.36167 * 13 12 11 15 15 C 1.34779 * 120.63434 * 233.58653 * 14 13 12 16 16 O 1.21279 * 119.99941 * 184.69539 * 15 14 13 17 17 C 1.50697 * 119.99870 * 4.69740 * 15 14 13 18 18 C 1.52997 * 109.47288 * 84.66961 * 17 15 14 19 19 C 1.52997 * 109.47174 * 180.02562 * 18 17 15 20 20 C 1.53007 * 109.46947 * 300.00101 * 19 18 17 21 21 O 1.42904 * 109.46904 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.46900 * 60.00028 * 20 19 18 23 23 C 1.52997 * 109.47298 * 299.99757 * 22 20 19 24 24 C 1.46930 * 118.73761 * 53.86060 * 14 13 12 25 25 H 0.96996 * 119.99587 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.46224 * 58.62740 * 11 9 7 27 27 H 1.09007 * 109.44331 * 298.66290 * 11 9 7 28 28 H 1.08994 * 109.49828 * 301.41368 * 12 11 9 29 29 H 1.08995 * 109.49821 * 181.31026 * 12 11 9 30 30 H 1.09000 * 109.58275 * 185.57752 * 13 12 11 31 31 H 1.09002 * 109.58697 * 65.15408 * 13 12 11 32 32 H 1.09006 * 109.47230 * 324.67035 * 17 15 14 33 33 H 1.09000 * 109.47217 * 60.00215 * 18 17 15 34 34 H 1.08997 * 109.47442 * 300.00091 * 18 17 15 35 35 H 1.09000 * 109.47098 * 180.02562 * 19 18 17 36 36 H 1.08995 * 109.47144 * 60.00368 * 19 18 17 37 37 H 1.09000 * 109.47068 * 299.99784 * 20 19 18 38 38 H 0.96704 * 113.99594 * 179.97438 * 21 20 19 39 39 H 1.09006 * 109.47167 * 60.00324 * 22 20 19 40 40 H 1.09006 * 109.46665 * 179.97438 * 22 20 19 41 41 H 1.09000 * 109.47098 * 179.97438 * 23 22 20 42 42 H 1.09000 * 109.47060 * 300.00483 * 23 22 20 43 43 H 1.09006 * 109.58354 * 65.92827 * 24 14 13 44 44 H 1.08999 * 109.58891 * 186.34792 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6248 -2.5576 -0.8908 11 6 0.3712 -2.5811 1.2491 12 6 -0.4198 -3.8911 1.2331 13 6 0.5557 -5.0723 1.2502 14 7 1.4986 -4.9231 0.1333 15 6 1.6755 -5.9219 -0.7542 16 8 2.5174 -5.8206 -1.6212 17 6 0.8271 -7.1645 -0.6691 18 6 -0.4936 -6.9317 -1.4054 19 6 -1.3552 -8.1930 -1.3185 20 6 -0.6112 -9.3642 -1.9634 21 8 -1.4162 -10.5422 -1.8827 22 6 0.7095 -9.5969 -1.2270 23 6 1.5711 -8.3356 -1.3139 24 6 2.2495 -3.6666 0.0057 25 1 -0.4849 0.8400 0.0004 26 1 -0.3208 -1.7392 1.2618 27 1 1.0004 -2.5476 2.1386 28 1 -1.0302 -3.9365 0.3312 29 1 -1.0634 -3.9382 2.1114 30 1 0.0023 -6.0047 1.1392 31 1 1.1036 -5.0801 2.1925 32 1 0.6243 -7.3951 0.3768 33 1 -0.2909 -6.7012 -2.4513 34 1 -1.0238 -6.0976 -0.9457 35 1 -2.2960 -8.0273 -1.8434 36 1 -1.5580 -8.4231 -0.2726 37 1 -0.4085 -9.1341 -3.0094 38 1 -1.0063 -11.3261 -2.2735 39 1 0.5067 -9.8271 -0.1810 40 1 1.2393 -10.4316 -1.6862 41 1 2.5118 -8.5013 -0.7889 42 1 1.7738 -8.1055 -2.3599 43 1 2.9328 -3.5621 0.8486 44 1 2.8142 -3.6714 -0.9266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118777358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:33 Heat of formation + Delta-G solvation = -115.842278 kcal Electronic energy + Delta-G solvation = -23235.130829 eV Core-core repulsion = 19957.866232 eV Total energy + Delta-G solvation = -3277.264597 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 6.98 seconds Orbital eigenvalues (eV) -40.25392 -38.49699 -36.79945 -35.45756 -33.48920 -31.38190 -30.95526 -30.58173 -29.42925 -25.18456 -24.81413 -22.98615 -22.64506 -21.69706 -20.35725 -19.54547 -18.19385 -17.41863 -16.95460 -16.17417 -15.95392 -15.02859 -14.69248 -14.60818 -14.43247 -13.81985 -13.74669 -13.38865 -13.03595 -12.87730 -12.73783 -12.41997 -12.36664 -12.05546 -12.01435 -11.73697 -11.32841 -11.24466 -11.00156 -10.93968 -10.77230 -10.67147 -10.37532 -10.22700 -9.96722 -9.95262 -9.80142 -9.48105 -9.17650 -8.82452 -8.39857 -7.89349 -6.03345 -4.10410 3.02822 3.29130 3.35734 3.38617 3.52923 3.97804 4.41474 4.51217 4.55722 4.75343 4.99079 5.04435 5.10268 5.17203 5.26059 5.27177 5.34894 5.44320 5.62246 5.63482 5.71530 5.79565 5.84817 5.87703 5.98686 6.04527 6.11613 6.18773 6.29470 6.32504 6.39512 6.47000 6.65536 6.79865 6.96309 7.15879 7.32247 7.42695 7.67664 7.90385 8.02103 8.06109 8.36383 8.65754 8.93267 9.54558 11.02088 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033882 B = 0.003873 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.187014 B = 7227.971086 C = 7511.826442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.106 3.894 14 N -0.602 5.602 15 C 0.513 3.487 16 O -0.552 6.552 17 C -0.109 4.109 18 C -0.106 4.106 19 C -0.108 4.108 20 C 0.102 3.898 21 O -0.570 6.570 22 C -0.149 4.149 23 C -0.098 4.098 24 C 0.116 3.884 25 H 0.260 0.740 26 H 0.096 0.904 27 H 0.035 0.965 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.376 0.624 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 -17.747 0.631 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.173 4.173 13 C -0.017 4.017 14 N -0.334 5.334 15 C 0.300 3.700 16 O -0.431 6.431 17 C -0.130 4.130 18 C -0.144 4.144 19 C -0.146 4.146 20 C 0.044 3.956 21 O -0.376 6.376 22 C -0.187 4.187 23 C -0.136 4.136 24 C -0.005 4.005 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.222 0.778 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.774 -17.126 0.485 17.356 hybrid contribution 0.814 0.634 -0.114 1.038 sum -1.960 -16.492 0.371 16.612 Atomic orbital electron populations 1.69869 1.05888 1.26475 1.50536 1.24936 0.94859 0.99075 0.94928 0.86579 0.79856 0.83329 0.78158 1.20665 1.21247 1.19884 1.21086 0.93007 0.90318 1.50909 0.92504 1.19043 0.92870 0.91114 0.94771 0.95289 1.21631 0.99449 0.95402 0.98571 1.22005 0.97631 0.96664 1.00956 1.21815 0.91494 0.99187 0.89206 1.48318 1.41888 1.16139 1.27010 1.20458 0.83697 0.84415 0.81384 1.90644 1.35665 1.80734 1.36067 1.21386 0.95957 0.93927 1.01757 1.21445 0.93775 0.97649 1.01556 1.21453 0.98614 0.92693 1.01793 1.21885 0.89813 0.85543 0.98407 1.86511 1.47129 1.19959 1.83987 1.22270 0.96306 0.98238 1.01858 1.21308 0.97721 0.92212 1.02394 1.22087 0.95027 0.81979 1.01383 0.92977 0.88624 0.94612 0.92357 0.92485 0.90860 0.92003 0.89076 0.90947 0.90279 0.90886 0.91038 0.92564 0.77763 0.91130 0.91592 0.91381 0.90572 0.92793 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 11.31 55.43 0.63 -24.17 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.89 8.57 -34.44 -0.30 -14.19 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.00 2.26 -91.43 -0.21 0.80 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 12 C -0.13 -2.33 6.08 -26.61 -0.16 -2.49 16 13 C 0.11 1.61 6.23 -3.71 -0.02 1.59 16 14 N -0.60 -11.00 2.97 -172.50 -0.51 -11.51 16 15 C 0.51 9.08 6.81 -10.99 -0.07 9.01 16 16 O -0.55 -11.75 15.52 5.56 0.09 -11.66 16 17 C -0.11 -1.41 1.69 -91.78 -0.16 -1.56 16 18 C -0.11 -1.28 5.07 -26.73 -0.14 -1.42 16 19 C -0.11 -1.12 5.57 -26.73 -0.15 -1.27 16 20 C 0.10 0.99 3.47 -26.73 -0.09 0.89 16 21 O -0.57 -5.43 13.32 -35.23 -0.47 -5.90 16 22 C -0.15 -1.36 5.55 -26.73 -0.15 -1.50 16 23 C -0.10 -1.15 4.73 -26.73 -0.13 -1.27 16 24 C 0.12 2.51 5.67 -3.48 -0.02 2.49 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.10 2.41 6.04 -51.93 -0.31 2.09 16 27 H 0.04 0.78 8.14 -51.92 -0.42 0.35 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.90 5.20 -51.93 -0.27 0.62 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.03 6.29 -51.93 -0.33 0.71 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.00 7.90 -51.93 -0.41 0.59 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.38 1.99 9.08 45.56 0.41 2.40 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.98 7.87 -51.93 -0.41 0.58 16 43 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.08 1.81 7.03 -51.93 -0.37 1.45 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -30.73 337.26 -8.74 -39.47 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.72 Total: 2.59 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.82 Total: -9.93 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.12 Total: -35.67 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.38 Total: -17.57 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.73 -8.74 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118777358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.373 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.98 seconds