Wall clock time and date at job start Tue Mar 31 2020 06:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 110.04668 * 2 1 4 4 O 1.43891 * 109.90814 * 238.82680 * 2 1 3 5 5 C 1.44430 * 106.99747 * 214.25221 * 4 2 1 6 6 C 1.55101 * 103.55620 * 39.74412 * 5 4 2 7 7 C 1.53593 * 109.91357 * 121.17719 * 2 1 3 8 8 C 1.52423 * 110.47104 * 3.05326 * 7 2 1 9 9 C 1.53294 * 109.38952 * 177.18860 * 8 7 2 10 10 N 1.46914 * 108.72731 * 53.70316 * 9 8 7 11 11 C 1.34777 * 120.57359 * 125.87114 * 10 9 8 12 12 O 1.21278 * 119.99854 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.50701 * 109.47064 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 11 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.46930 * 118.85826 * 306.14821 * 10 9 8 23 23 C 1.52426 * 110.46064 * 239.88654 * 7 2 1 24 24 H 1.09002 * 109.46750 * 298.82139 * 1 2 3 25 25 H 1.08998 * 109.47245 * 58.82493 * 1 2 3 26 26 H 1.08996 * 109.46727 * 178.82651 * 1 2 3 27 27 H 1.09003 * 109.47221 * 181.18396 * 3 2 1 28 28 H 1.09001 * 109.46917 * 301.17424 * 3 2 1 29 29 H 1.08999 * 109.47315 * 61.17602 * 3 2 1 30 30 H 1.09004 * 110.60471 * 281.22411 * 5 4 2 31 31 H 1.08998 * 110.73918 * 158.32614 * 5 4 2 32 32 H 1.08994 * 110.93188 * 205.20848 * 6 5 4 33 33 H 1.09004 * 110.96063 * 81.55751 * 6 5 4 34 34 H 1.08998 * 109.48880 * 57.21050 * 8 7 2 35 35 H 1.09007 * 109.50007 * 297.17083 * 8 7 2 36 36 H 1.09005 * 109.59141 * 293.92857 * 9 8 7 37 37 H 1.08999 * 109.59643 * 173.48041 * 9 8 7 38 38 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 39 39 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 40 40 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.59704 * 173.62597 * 22 10 9 42 42 H 1.08995 * 109.59164 * 294.08411 * 22 10 9 43 43 H 1.09002 * 109.48584 * 302.79526 * 23 7 2 44 44 H 1.09000 * 109.48803 * 62.85064 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0545 1.4373 0.0000 4 8 2.0200 -0.7003 -1.1576 5 6 3.2372 -1.3697 -0.7622 6 6 2.9193 -1.8899 0.6640 7 6 2.0532 -0.7476 1.2355 8 6 0.8940 -1.3236 2.0405 9 6 1.4457 -2.1224 3.2269 10 7 2.3632 -1.2638 3.9879 11 6 2.1887 -1.0771 5.3112 12 8 1.2681 -1.6206 5.8840 13 6 3.1373 -0.1932 6.0791 14 6 2.7250 -0.1530 7.5281 15 1 1.8625 -0.7121 7.8598 16 6 3.4495 0.5966 8.4305 17 7 3.0899 0.6312 9.6950 18 14 4.9416 1.5629 7.8569 19 1 4.5197 2.9251 7.4423 20 1 5.9220 1.6651 8.9675 21 1 5.5692 0.8670 6.7050 22 6 3.4709 -0.6070 3.2804 23 6 2.9083 0.1763 2.0949 24 1 -0.3633 0.4954 0.9004 25 1 -0.3633 0.5320 -0.8792 26 1 -0.3633 -1.0274 -0.0210 27 1 3.1443 1.4265 -0.0212 28 1 1.6793 1.9610 -0.8793 29 1 1.7136 1.9485 0.9003 30 1 4.0706 -0.6675 -0.7376 31 1 3.4565 -2.2001 -1.4333 32 1 3.8326 -2.0144 1.2456 33 1 2.3561 -2.8222 0.6225 34 1 0.3005 -1.9802 1.4045 35 1 0.2678 -0.5110 2.4090 36 1 1.9829 -2.9972 2.8603 37 1 0.6234 -2.4383 3.8689 38 1 3.1103 0.8149 5.6653 39 1 4.1490 -0.5912 6.0005 40 1 3.5993 1.1588 10.3298 41 1 3.9835 0.0760 3.9577 42 1 4.1708 -1.3600 2.9181 43 1 3.7290 0.5727 1.4970 44 1 2.2964 0.9994 2.4639 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:24 Heat of formation + Delta-G solvation = -81.123635 kcal Electronic energy + Delta-G solvation = -23783.010409 eV Core-core repulsion = 20507.251326 eV Total energy + Delta-G solvation = -3275.759083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.32309 -38.96156 -36.46438 -33.76342 -32.94264 -32.36167 -31.69436 -29.66916 -28.57519 -27.61122 -25.24120 -23.79570 -23.20996 -22.28887 -20.83302 -19.26192 -17.79388 -17.18031 -16.53703 -16.22911 -15.63233 -15.36268 -15.14295 -15.06935 -14.34478 -14.02710 -13.87675 -13.68114 -13.26315 -13.06224 -12.86653 -12.63240 -12.48222 -12.25207 -12.10590 -12.00701 -11.68543 -11.53684 -11.46809 -11.16435 -11.05949 -10.78491 -10.60867 -10.53535 -10.35938 -10.34500 -9.98655 -9.76665 -9.22813 -8.76236 -8.59521 -8.17929 -6.04380 -4.03884 3.23758 3.29198 3.32608 3.50635 3.54314 3.64956 4.21628 4.38634 4.40079 4.51592 4.83653 4.87767 4.94055 4.97569 5.08627 5.17775 5.25970 5.28382 5.32114 5.39117 5.48043 5.50037 5.54173 5.60447 5.64024 5.69730 5.70608 5.82224 5.85790 5.86783 5.94417 6.00715 6.05111 6.14794 6.24720 6.30898 6.56068 6.80762 6.88961 6.99485 7.53100 8.00750 8.54339 9.07356 9.16708 9.54084 11.08778 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026575 B = 0.004610 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.366256 B = 6072.057891 C = 6447.983622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.107 3.893 3 C -0.165 4.165 4 O -0.371 6.371 5 C 0.047 3.953 6 C -0.149 4.149 7 C -0.077 4.077 8 C -0.119 4.119 9 C 0.111 3.889 10 N -0.628 5.628 11 C 0.524 3.476 12 O -0.532 6.532 13 C -0.027 4.027 14 C -0.512 4.512 15 H 0.092 0.908 16 C 0.069 3.931 17 N -0.897 5.897 18 Si 0.873 3.127 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.267 1.267 22 C 0.108 3.892 23 C -0.125 4.125 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.040 0.960 39 H 0.044 0.956 40 H 0.264 0.736 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.128 -1.334 -23.293 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.068 3.932 3 C -0.222 4.222 4 O -0.290 6.290 5 C -0.030 4.030 6 C -0.186 4.186 7 C -0.078 4.078 8 C -0.157 4.157 9 C -0.012 4.012 10 N -0.364 5.364 11 C 0.315 3.685 12 O -0.406 6.406 13 C -0.066 4.066 14 C -0.550 4.550 15 H 0.110 0.890 16 C -0.132 4.132 17 N -0.536 5.536 18 Si 0.700 3.300 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.015 4.015 23 C -0.163 4.163 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.566 -1.554 -22.959 23.019 hybrid contribution 1.079 0.640 -0.112 1.260 sum 1.645 -0.914 -23.072 23.148 Atomic orbital electron populations 1.22003 0.93127 1.02817 1.02279 1.22046 0.94740 0.91786 0.84602 1.22342 1.01606 0.95817 1.02447 1.88915 1.39631 1.67081 1.33411 1.23511 0.87903 0.96132 0.95443 1.23288 1.00676 0.98529 0.96144 1.21443 0.96083 0.95354 0.94891 1.22027 0.96744 1.00456 0.96505 1.21482 0.94422 0.92465 0.92838 1.48314 1.30024 1.49626 1.08475 1.21428 0.85908 0.81048 0.80096 1.90570 1.32966 1.49161 1.67920 1.19682 0.94963 0.94548 0.97446 1.21017 1.15017 1.29873 0.89133 0.89023 1.24975 0.97183 0.96276 0.94814 1.69895 1.40149 1.41144 1.02365 0.86909 0.83454 0.80875 0.78767 1.20122 1.21076 1.19143 1.21638 0.89160 0.96548 0.94179 1.21974 0.99740 0.98248 0.96310 0.90911 0.92356 0.91553 0.92020 0.92313 0.91077 0.92424 0.89298 0.89753 0.90330 0.90586 0.90955 0.92418 0.89111 0.94207 0.93774 0.92596 0.89055 0.91951 0.90488 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 7.72 37.16 0.29 -1.08 16 2 C 0.11 1.07 1.19 -90.31 -0.11 0.97 16 3 C -0.16 -1.52 7.66 37.16 0.28 -1.23 16 4 O -0.37 -4.12 10.87 -35.23 -0.38 -4.50 16 5 C 0.05 0.41 7.68 38.27 0.29 0.70 16 6 C -0.15 -1.34 5.12 -24.93 -0.13 -1.47 16 7 C -0.08 -0.78 0.63 -154.10 -0.10 -0.88 16 8 C -0.12 -1.34 3.57 -26.87 -0.10 -1.44 16 9 C 0.11 1.55 6.13 -3.66 -0.02 1.53 16 10 N -0.63 -10.35 2.97 -172.93 -0.51 -10.86 16 11 C 0.52 11.60 7.69 -10.98 -0.08 11.52 16 12 O -0.53 -13.87 14.86 5.56 0.08 -13.79 16 13 C -0.03 -0.63 2.87 -29.03 -0.08 -0.71 16 14 C -0.51 -15.02 9.48 -34.44 -0.33 -15.35 16 15 H 0.09 3.06 7.00 -52.49 -0.37 2.70 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 18 Si 0.87 20.72 27.47 -169.99 -4.67 16.05 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.27 -5.83 6.54 56.52 0.37 -5.46 16 22 C 0.11 1.40 6.00 -3.90 -0.02 1.38 16 23 C -0.12 -1.32 3.68 -27.11 -0.10 -1.42 16 24 H 0.07 0.67 6.90 -51.93 -0.36 0.31 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.62 6.62 -51.93 -0.34 0.27 16 27 H 0.06 0.54 6.70 -51.93 -0.35 0.19 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.64 6.81 -51.93 -0.35 0.29 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.73 6.03 -51.93 -0.31 0.41 16 33 H 0.08 0.70 7.59 -51.93 -0.39 0.31 16 34 H 0.08 0.75 6.65 -51.93 -0.35 0.41 16 35 H 0.07 0.88 6.88 -51.93 -0.36 0.52 16 36 H 0.06 0.72 7.35 -51.93 -0.38 0.34 16 37 H 0.09 1.47 7.00 -51.93 -0.36 1.10 16 38 H 0.04 0.88 7.12 -51.93 -0.37 0.51 16 39 H 0.04 0.99 7.00 -51.93 -0.36 0.63 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.09 1.26 5.92 -51.93 -0.31 0.95 16 42 H 0.06 0.70 6.45 -51.93 -0.33 0.36 16 43 H 0.08 0.69 6.56 -51.93 -0.34 0.35 16 44 H 0.07 0.86 6.96 -51.93 -0.36 0.50 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -33.80 322.16 -7.01 -40.81 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.86 Total: 0.11 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -0.30 Total: -5.58 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.26 Total: -37.95 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.30 Total: -18.29 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.80 -7.01 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.311 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds