Wall clock time and date at job start Tue Mar 31 2020 06:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 110.04668 * 2 1 4 4 O 1.43891 * 109.90814 * 238.82680 * 2 1 3 5 5 C 1.44430 * 106.99747 * 214.25221 * 4 2 1 6 6 C 1.55101 * 103.55620 * 39.74412 * 5 4 2 7 7 C 1.53593 * 109.91357 * 121.17719 * 2 1 3 8 8 C 1.52423 * 110.47104 * 3.05326 * 7 2 1 9 9 C 1.53294 * 109.38952 * 177.18860 * 8 7 2 10 10 N 1.46914 * 108.72731 * 53.70316 * 9 8 7 11 11 C 1.34777 * 120.57359 * 125.87114 * 10 9 8 12 12 O 1.21278 * 119.99854 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.50701 * 109.47064 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 11 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.46930 * 118.85826 * 306.14821 * 10 9 8 23 23 C 1.52426 * 110.46064 * 239.88654 * 7 2 1 24 24 H 1.09002 * 109.46750 * 298.82139 * 1 2 3 25 25 H 1.08998 * 109.47245 * 58.82493 * 1 2 3 26 26 H 1.08996 * 109.46727 * 178.82651 * 1 2 3 27 27 H 1.09003 * 109.47221 * 181.18396 * 3 2 1 28 28 H 1.09001 * 109.46917 * 301.17424 * 3 2 1 29 29 H 1.08999 * 109.47315 * 61.17602 * 3 2 1 30 30 H 1.09004 * 110.60471 * 281.22411 * 5 4 2 31 31 H 1.08998 * 110.73918 * 158.32614 * 5 4 2 32 32 H 1.08994 * 110.93188 * 205.20848 * 6 5 4 33 33 H 1.09004 * 110.96063 * 81.55751 * 6 5 4 34 34 H 1.08998 * 109.48880 * 57.21050 * 8 7 2 35 35 H 1.09007 * 109.50007 * 297.17083 * 8 7 2 36 36 H 1.09005 * 109.59141 * 293.92857 * 9 8 7 37 37 H 1.08999 * 109.59643 * 173.48041 * 9 8 7 38 38 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 39 39 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 40 40 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.59704 * 173.62597 * 22 10 9 42 42 H 1.08995 * 109.59164 * 294.08411 * 22 10 9 43 43 H 1.09002 * 109.48584 * 302.79526 * 23 7 2 44 44 H 1.09000 * 109.48803 * 62.85064 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0545 1.4373 0.0000 4 8 2.0200 -0.7003 -1.1576 5 6 3.2372 -1.3697 -0.7622 6 6 2.9193 -1.8899 0.6640 7 6 2.0532 -0.7476 1.2355 8 6 0.8940 -1.3236 2.0405 9 6 1.4457 -2.1224 3.2269 10 7 2.3632 -1.2638 3.9879 11 6 2.1887 -1.0771 5.3112 12 8 1.2681 -1.6206 5.8840 13 6 3.1373 -0.1932 6.0791 14 6 2.7250 -0.1530 7.5281 15 1 1.8625 -0.7121 7.8598 16 6 3.4495 0.5966 8.4305 17 7 3.0899 0.6312 9.6950 18 14 4.9416 1.5629 7.8569 19 1 4.5197 2.9251 7.4423 20 1 5.9220 1.6651 8.9675 21 1 5.5692 0.8670 6.7050 22 6 3.4709 -0.6070 3.2804 23 6 2.9083 0.1763 2.0949 24 1 -0.3633 0.4954 0.9004 25 1 -0.3633 0.5320 -0.8792 26 1 -0.3633 -1.0274 -0.0210 27 1 3.1443 1.4265 -0.0212 28 1 1.6793 1.9610 -0.8793 29 1 1.7136 1.9485 0.9003 30 1 4.0706 -0.6675 -0.7376 31 1 3.4565 -2.2001 -1.4333 32 1 3.8326 -2.0144 1.2456 33 1 2.3561 -2.8222 0.6225 34 1 0.3005 -1.9802 1.4045 35 1 0.2678 -0.5110 2.4090 36 1 1.9829 -2.9972 2.8603 37 1 0.6234 -2.4383 3.8689 38 1 3.1103 0.8149 5.6653 39 1 4.1490 -0.5912 6.0005 40 1 3.5993 1.1588 10.3298 41 1 3.9835 0.0760 3.9577 42 1 4.1708 -1.3600 2.9181 43 1 3.7290 0.5727 1.4970 44 1 2.2964 0.9994 2.4639 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:23 Heat of formation + Delta-G solvation = -104.517304 kcal Electronic energy + Delta-G solvation = -23784.024835 eV Core-core repulsion = 20507.251326 eV Total energy + Delta-G solvation = -3276.773509 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.20189 -40.41950 -37.69741 -35.07852 -34.75184 -33.27734 -32.81189 -31.44464 -29.54061 -28.45282 -26.38799 -25.20782 -24.18967 -23.53388 -21.78379 -20.48492 -19.14013 -18.84123 -17.75784 -17.17825 -16.97297 -16.60940 -16.42105 -16.03138 -15.92654 -15.19585 -15.06853 -14.77174 -14.55210 -14.05345 -13.93872 -13.80922 -13.72435 -13.37188 -13.20215 -13.06863 -12.86627 -12.67883 -12.59463 -12.38979 -12.27736 -11.93554 -11.86403 -11.82657 -11.53038 -11.36069 -11.23324 -11.15931 -10.79085 -10.51095 -10.48207 -9.52089 -8.26356 -6.35118 1.38267 1.43171 1.53421 1.83562 2.16737 2.38227 2.95164 3.06842 3.42377 3.56944 3.69610 3.95194 4.08593 4.12924 4.19188 4.21475 4.28691 4.31788 4.50673 4.52142 4.62111 4.65670 4.66298 4.71238 4.76191 4.82737 4.86882 4.92109 4.95875 5.00991 5.03834 5.06930 5.10486 5.14197 5.24277 5.30072 5.42757 5.43105 5.48394 5.74133 6.10666 6.23970 6.53542 6.82225 7.25347 7.45636 8.91496 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026575 B = 0.004610 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.366256 B = 6072.057891 C = 6447.983622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.108 3.892 3 C -0.164 4.164 4 O -0.389 6.389 5 C 0.045 3.955 6 C -0.147 4.147 7 C -0.075 4.075 8 C -0.110 4.110 9 C 0.108 3.892 10 N -0.614 5.614 11 C 0.518 3.482 12 O -0.590 6.590 13 C -0.021 4.021 14 C -0.535 4.535 15 H 0.025 0.975 16 C 0.002 3.998 17 N -0.954 5.954 18 Si 0.959 3.041 19 H -0.261 1.261 20 H -0.285 1.285 21 H -0.227 1.227 22 C 0.098 3.902 23 C -0.119 4.119 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.268 0.732 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.994 -0.384 -26.693 26.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.069 3.931 3 C -0.221 4.221 4 O -0.309 6.309 5 C -0.031 4.031 6 C -0.184 4.184 7 C -0.076 4.076 8 C -0.148 4.148 9 C -0.014 4.014 10 N -0.348 5.348 11 C 0.308 3.692 12 O -0.470 6.470 13 C -0.061 4.061 14 C -0.573 4.573 15 H 0.044 0.956 16 C -0.195 4.195 17 N -0.594 5.594 18 Si 0.780 3.220 19 H -0.185 1.185 20 H -0.211 1.211 21 H -0.149 1.149 22 C -0.024 4.024 23 C -0.157 4.157 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.123 0.877 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.445 -0.614 -26.444 26.674 hybrid contribution 0.088 0.266 0.931 0.973 sum 3.533 -0.348 -25.512 25.758 Atomic orbital electron populations 1.22016 0.93286 1.02788 1.02331 1.22045 0.94745 0.92142 0.84207 1.22335 1.02139 0.95185 1.02469 1.88907 1.40694 1.67436 1.33892 1.23665 0.87403 0.96710 0.95360 1.23289 1.00729 0.97930 0.96436 1.21402 0.95600 0.95872 0.94689 1.21956 0.97313 0.99980 0.95564 1.21644 0.93510 0.93363 0.92864 1.48249 1.30850 1.48902 1.06814 1.21257 0.85124 0.80789 0.81994 1.90553 1.35173 1.51505 1.69742 1.19559 0.96080 0.96371 0.94049 1.21189 1.13580 1.29641 0.92891 0.95620 1.26159 1.01486 0.97369 0.94460 1.70101 1.42369 1.42573 1.04397 0.85567 0.77731 0.79326 0.79420 1.18530 1.21125 1.14900 1.22017 0.88360 0.97436 0.94589 1.21966 1.00500 0.97646 0.95598 0.91027 0.92180 0.91647 0.91112 0.92360 0.91068 0.91234 0.88058 0.88768 0.90283 0.89071 0.92255 0.90095 0.92131 0.91735 0.91501 0.92312 0.89276 0.89130 0.87744 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 7.72 71.98 0.56 -1.97 16 2 C 0.11 1.85 1.19 -10.59 -0.01 1.84 16 3 C -0.16 -2.52 7.66 71.98 0.55 -1.97 16 4 O -0.39 -7.42 10.87 -148.98 -1.62 -9.04 16 5 C 0.04 0.61 7.68 72.70 0.56 1.16 16 6 C -0.15 -2.05 5.12 31.76 0.16 -1.89 16 7 C -0.08 -1.28 0.63 -51.91 -0.03 -1.31 16 8 C -0.11 -2.29 3.57 30.50 0.11 -2.19 16 9 C 0.11 2.93 6.13 86.40 0.53 3.46 16 10 N -0.61 -19.38 2.97 -819.43 -2.43 -21.81 16 11 C 0.52 23.19 7.69 87.66 0.67 23.87 16 12 O -0.59 -32.65 14.86 -3.02 -0.04 -32.69 16 13 C -0.02 -0.97 2.87 29.10 0.08 -0.89 16 14 C -0.53 -32.56 9.48 25.60 0.24 -32.32 16 15 H 0.03 1.85 7.00 -2.91 -0.02 1.83 16 16 C 0.00 0.09 5.47 84.66 0.46 0.55 16 17 N -0.95 -61.56 13.96 21.45 0.30 -61.26 16 18 Si 0.96 41.66 27.47 68.60 1.88 43.55 16 19 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 20 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.23 -8.33 6.54 99.48 0.65 -7.68 16 22 C 0.10 2.16 6.00 86.24 0.52 2.68 16 23 C -0.12 -2.08 3.68 30.35 0.11 -1.97 16 24 H 0.07 1.23 6.90 -2.39 -0.02 1.21 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.11 6.62 -2.39 -0.02 1.10 16 27 H 0.07 0.95 6.70 -2.39 -0.02 0.93 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 1.09 6.81 -2.39 -0.02 1.08 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.15 6.03 -2.39 -0.01 1.14 16 33 H 0.08 1.13 7.59 -2.38 -0.02 1.11 16 34 H 0.09 1.64 6.65 -2.39 -0.02 1.63 16 35 H 0.06 1.40 6.88 -2.38 -0.02 1.39 16 36 H 0.08 1.83 7.35 -2.38 -0.02 1.82 16 37 H 0.06 2.03 7.00 -2.39 -0.02 2.01 16 38 H 0.06 2.67 7.12 -2.39 -0.02 2.65 16 39 H 0.07 2.79 7.00 -2.39 -0.02 2.78 16 40 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 41 H 0.09 2.06 5.92 -2.39 -0.01 2.05 16 42 H 0.09 1.57 6.45 -2.39 -0.02 1.55 16 43 H 0.10 1.32 6.56 -2.39 -0.02 1.31 16 44 H 0.07 1.31 6.96 -2.39 -0.02 1.30 16 Total: -1.00 -79.36 322.16 3.54 -75.83 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.94 Total: 16.38 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 4.51 Total: -10.95 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -2.13 Total: -83.08 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -1.66 Total: -41.73 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.88 Total: 43.55 kcal Total: -79.36 3.54 -75.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.691 kcal (2) G-P(sol) polarization free energy of solvation -79.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds